Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99769 * 2 1 4 4 H 1.48497 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46929 * 300.00118 * 3 2 1 6 6 H 1.48497 * 109.46807 * 59.99828 * 3 2 1 7 7 C 1.37875 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99702 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00306 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99747 * 179.97438 * 10 9 7 12 12 C 1.53124 * 109.52439 * 204.99950 * 11 10 9 13 13 C 1.53037 * 109.28148 * 182.44186 * 12 11 10 14 14 N 1.46844 * 109.52152 * 59.17731 * 13 12 11 15 15 C 1.46906 * 110.99887 * 174.16043 * 14 13 12 16 16 H 1.08996 * 110.43340 * 56.08963 * 15 14 13 17 17 C 1.54261 * 110.48447 * 293.54799 * 15 14 13 18 18 C 1.53878 * 106.59730 * 217.71150 * 17 15 14 19 19 C 1.54271 * 106.59991 * 359.97438 * 18 17 15 20 20 C 1.54892 * 110.48502 * 178.77052 * 15 14 13 21 21 H 1.09002 * 110.75542 * 38.30889 * 20 15 14 22 22 O 1.42902 * 110.75592 * 274.93373 * 20 15 14 23 23 C 1.46850 * 111.19991 * 298.25708 * 14 13 12 24 24 C 1.53032 * 109.52098 * 61.74469 * 23 14 13 25 25 H 0.97000 * 120.00441 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47089 * 60.00013 * 9 7 2 27 27 H 1.09004 * 109.46850 * 300.00165 * 9 7 2 28 28 H 1.00901 * 110.99972 * 303.95075 * 10 9 7 29 29 H 1.09001 * 109.57799 * 325.15766 * 11 10 9 30 30 H 1.08997 * 109.50392 * 62.49608 * 12 11 10 31 31 H 1.09000 * 109.49712 * 302.38243 * 12 11 10 32 32 H 1.08995 * 109.46089 * 299.16330 * 13 12 11 33 33 H 1.09000 * 109.45256 * 179.18504 * 13 12 11 34 34 H 1.08999 * 110.03759 * 336.99335 * 17 15 14 35 35 H 1.09000 * 110.03630 * 98.42629 * 17 15 14 36 36 H 1.09001 * 110.03556 * 119.28361 * 18 17 15 37 37 H 1.09004 * 110.03136 * 240.66924 * 18 17 15 38 38 H 1.08994 * 110.48785 * 142.29053 * 19 18 17 39 39 H 1.09001 * 110.48639 * 264.80745 * 19 18 17 40 40 H 0.96696 * 113.99525 * 179.97438 * 22 20 15 41 41 H 1.09005 * 109.46314 * 181.76064 * 23 14 13 42 42 H 1.08998 * 109.46244 * 301.72632 * 23 14 13 43 43 H 1.09004 * 109.50441 * 180.87586 * 24 23 14 44 44 H 1.08999 * 109.50499 * 60.76414 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 1.5055 -4.9070 0.0024 12 6 2.4111 -5.9799 0.6135 13 6 1.7003 -7.3339 0.5559 14 7 1.3906 -7.6665 -0.8405 15 6 0.8325 -9.0212 -0.9477 16 1 -0.0476 -9.1215 -0.3126 17 6 1.8944 -10.0741 -0.5690 18 6 1.6898 -11.2664 -1.5199 19 6 0.5102 -10.8967 -2.4428 20 6 0.4818 -9.3480 -2.4205 21 1 1.2321 -8.9377 -3.0965 22 8 -0.8203 -8.8608 -2.7511 23 6 0.4840 -6.6754 -1.4340 24 6 1.1586 -5.3017 -1.4358 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8412 -3.5489 -0.7792 29 1 0.5902 -4.8258 0.5887 30 1 2.6269 -5.7260 1.6513 31 1 3.3427 -6.0337 0.0502 32 1 0.7756 -7.2834 1.1308 33 1 2.3484 -8.1024 0.9771 34 1 2.8942 -9.6599 -0.6995 35 1 1.7534 -10.3919 0.4641 36 1 2.5901 -11.4308 -2.1119 37 1 1.4502 -12.1631 -0.9482 38 1 0.6891 -11.2601 -3.4547 39 1 -0.4223 -11.3036 -2.0516 40 1 -1.0873 -9.0399 -3.6631 41 1 0.2486 -6.9657 -2.4579 42 1 -0.4349 -6.6280 -0.8497 43 1 0.4795 -4.5633 -1.8621 44 1 2.0705 -5.3449 -2.0313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579943211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -86.479926 kcal Electronic energy + Delta-G solvation = -21227.792230 eV Core-core repulsion = 18177.745683 eV Total energy + Delta-G solvation = -3050.046547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85435 -38.99735 -36.75064 -35.87427 -34.62232 -32.14735 -31.80310 -28.89966 -28.49504 -27.19430 -24.44340 -24.03578 -22.99242 -21.34477 -20.99161 -20.79433 -18.67484 -18.40258 -17.48818 -16.75598 -16.17006 -15.91542 -15.77344 -15.52299 -15.16568 -15.11960 -14.71258 -14.35174 -14.04891 -13.96345 -13.46911 -13.36559 -13.22060 -13.08744 -12.73746 -12.70848 -12.50379 -12.22560 -12.13237 -12.07918 -11.85682 -11.68735 -11.52847 -11.35608 -11.26243 -11.06132 -10.79193 -10.67175 -9.35120 -9.05077 -8.23441 -6.35218 1.40321 1.41358 1.55638 2.39437 2.80900 3.09511 3.28465 3.51565 3.54753 3.79000 3.87345 4.01172 4.07880 4.22041 4.27779 4.39826 4.42975 4.47189 4.54673 4.58689 4.64140 4.69364 4.73575 4.77601 4.94955 4.96748 5.02445 5.05806 5.10899 5.14492 5.20475 5.25030 5.26791 5.30165 5.40307 5.43394 5.62279 6.01527 6.07983 6.18240 6.45977 6.72735 6.89359 6.89748 7.36062 8.88460 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042762 B = 0.003417 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.632988 B = 8192.080639 C = 8579.070411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.682 5.682 11 C 0.084 3.916 12 C -0.091 4.091 13 C 0.061 3.939 14 N -0.528 5.528 15 C 0.080 3.920 16 H 0.034 0.966 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.072 0.928 22 O -0.582 6.582 23 C 0.076 3.924 24 C -0.135 4.135 25 H 0.265 0.735 26 H -0.039 1.039 27 H -0.008 1.008 28 H 0.335 0.665 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.089 0.911 42 H 0.010 0.990 43 H 0.041 0.959 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -24.463 -5.410 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.311 5.311 11 C -0.026 4.026 12 C -0.129 4.129 13 C -0.067 4.067 14 N -0.252 5.252 15 C -0.029 4.029 16 H 0.052 0.948 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.185 4.185 20 C 0.042 3.958 21 H 0.090 0.910 22 O -0.391 6.391 23 C -0.053 4.053 24 C -0.174 4.174 25 H 0.074 0.926 26 H -0.022 1.022 27 H 0.010 0.990 28 H 0.153 0.847 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.243 0.757 41 H 0.107 0.893 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.500 -24.120 -4.347 24.758 hybrid contribution -1.416 1.052 -0.867 1.966 sum 2.084 -23.069 -5.215 23.743 Atomic orbital electron populations 1.70112 1.07916 1.27957 1.51635 1.26008 0.95809 1.03561 0.94538 0.85236 0.78958 0.78042 0.77760 1.18485 1.20210 1.20385 1.21592 0.93851 0.91396 1.50464 0.91637 1.19178 0.90642 0.89067 0.92771 1.60647 1.20031 1.01245 1.49190 1.21642 0.95946 0.90066 0.94962 1.21453 0.98504 0.91955 1.00990 1.22093 0.98874 0.97462 0.88248 1.62151 1.43848 1.01527 1.17708 1.22558 0.95980 0.88566 0.95766 0.94780 1.22128 0.98774 0.94143 0.99992 1.22002 0.98472 0.97626 0.97281 1.22939 0.99589 0.94680 1.01339 1.22866 0.84385 0.93473 0.95058 0.90973 1.86523 1.34142 1.82243 1.36150 1.21881 0.92234 0.90795 1.00344 1.22210 1.00979 0.96275 0.97960 0.92624 1.02175 0.98984 0.84706 0.94260 0.91362 0.90755 0.96173 0.88332 0.90265 0.90966 0.90419 0.90511 0.89657 0.91139 0.75673 0.89255 0.97132 0.94048 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.98 45.27 29.54 68.60 2.03 47.30 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.53 -31.55 9.32 25.60 0.24 -31.31 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 11.89 5.24 85.56 0.45 12.34 16 10 N -0.68 -30.97 6.24 -495.17 -3.09 -34.07 16 11 C 0.08 3.22 2.53 45.00 0.11 3.34 16 12 C -0.09 -2.76 5.70 30.65 0.17 -2.58 16 13 C 0.06 1.58 5.34 86.33 0.46 2.04 16 14 N -0.53 -13.47 4.48 -864.85 -3.87 -17.35 16 15 C 0.08 1.70 2.34 45.99 0.11 1.81 16 16 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 17 C -0.11 -1.77 5.34 31.32 0.17 -1.60 16 18 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 19 C -0.15 -1.88 6.55 31.68 0.21 -1.67 16 20 C 0.10 1.82 2.91 31.90 0.09 1.92 16 21 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 22 O -0.58 -11.47 11.66 -148.98 -1.74 -13.21 16 23 C 0.08 2.28 4.87 86.32 0.42 2.70 16 24 C -0.13 -4.67 5.35 30.64 0.16 -4.51 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H -0.04 -2.38 7.51 -2.39 -0.02 -2.39 16 27 H -0.01 -0.49 8.06 -2.39 -0.02 -0.51 16 28 H 0.34 14.47 8.44 -89.69 -0.76 13.71 16 29 H 0.04 1.69 7.80 -2.39 -0.02 1.67 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 2.05 7.17 -2.39 -0.02 2.04 16 34 H 0.08 1.31 8.03 -2.39 -0.02 1.29 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.39 4.29 9.12 -74.06 -0.68 3.61 16 41 H 0.09 2.52 5.79 -2.38 -0.01 2.51 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.04 1.62 7.55 -2.38 -0.02 1.60 16 44 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 Total: -1.00 -68.54 337.52 -3.58 -72.13 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.46 Total: 21.42 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.27 Total: -18.30 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -6.68 Total: -109.33 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.74 Total: -13.21 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.54 -3.58 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579943211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.354 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds