Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47440 * 240.00342 * 3 2 1 5 5 H 1.48507 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47404 * 119.99575 * 3 2 1 7 7 C 1.37882 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99305 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46589 * 180.02562 * 9 7 2 11 11 C 1.46910 * 110.99702 * 179.97438 * 10 9 7 12 12 C 1.53119 * 109.51795 * 155.00046 * 11 10 9 13 13 C 1.53042 * 109.27480 * 177.62384 * 12 11 10 14 14 N 1.46844 * 109.52345 * 300.82222 * 13 12 11 15 15 C 1.46897 * 111.00130 * 185.84147 * 14 13 12 16 16 H 1.08998 * 110.05827 * 190.30659 * 15 14 13 17 17 C 1.54271 * 110.03097 * 311.72413 * 15 14 13 18 18 C 1.54888 * 104.19535 * 142.89318 * 17 15 14 19 19 C 1.54885 * 102.75067 * 322.05985 * 18 17 15 20 20 C 1.53872 * 110.03386 * 68.88852 * 15 14 13 21 21 H 1.09002 * 110.07464 * 121.41323 * 20 15 14 22 22 O 1.42900 * 110.03283 * 0.02562 * 20 15 14 23 23 C 1.46841 * 111.19985 * 61.73958 * 14 13 12 24 24 C 1.53036 * 109.52425 * 298.25811 * 23 14 13 25 25 H 0.96998 * 120.00180 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47501 * 59.99941 * 9 7 2 27 27 H 1.08996 * 109.47413 * 299.99786 * 9 7 2 28 28 H 1.00895 * 111.00327 * 303.95314 * 10 9 7 29 29 H 1.08994 * 109.52187 * 34.87533 * 11 10 9 30 30 H 1.09001 * 109.50632 * 57.68542 * 12 11 10 31 31 H 1.09003 * 109.53570 * 297.57904 * 12 11 10 32 32 H 1.09001 * 109.46246 * 180.80006 * 13 12 11 33 33 H 1.08998 * 109.46193 * 60.83807 * 13 12 11 34 34 H 1.09004 * 110.48677 * 24.21843 * 17 15 14 35 35 H 1.08997 * 110.48493 * 261.57656 * 17 15 14 36 36 H 1.09001 * 110.75401 * 80.37725 * 18 17 15 37 37 H 1.09006 * 110.75602 * 203.74056 * 18 17 15 38 38 H 1.09006 * 110.48677 * 156.62255 * 19 18 17 39 39 H 1.09001 * 110.48677 * 279.26008 * 19 18 17 40 40 H 0.96705 * 113.99693 * 181.37659 * 22 20 15 41 41 H 1.09000 * 109.46289 * 58.27873 * 23 14 13 42 42 H 1.08999 * 109.46200 * 178.24227 * 23 14 13 43 43 H 1.08995 * 109.50339 * 299.23862 * 24 23 14 44 44 H 1.09004 * 109.53272 * 179.13620 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6156 -0.0015 11 6 1.5054 -4.9070 -0.0020 12 6 2.4116 -5.9802 -0.6117 13 6 1.6999 -7.3339 -0.5553 14 7 1.3878 -7.6666 0.8405 15 6 0.8289 -9.0209 0.9466 16 1 0.4357 -9.1855 1.9498 17 6 -0.2899 -9.2142 -0.0979 18 6 -0.1230 -10.6812 -0.5661 19 6 1.4155 -10.8565 -0.5995 20 6 1.9132 -10.0651 0.6276 21 1 2.0470 -10.7366 1.4757 22 8 3.1469 -9.4119 0.3220 23 6 0.4808 -6.6751 1.4326 24 6 1.1560 -5.3017 1.4356 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8880 28 1 2.8412 -3.5482 -0.7823 29 1 0.5911 -4.8254 -0.5897 30 1 3.3422 -6.0345 -0.0468 31 1 2.6297 -5.7267 -1.6491 32 1 2.3482 -8.1028 -0.9757 33 1 0.7763 -7.2829 -1.1318 34 1 -0.1533 -8.5289 -0.9345 35 1 -1.2683 -9.0687 0.3599 36 1 -0.5747 -11.3687 0.1491 37 1 -0.5494 -10.8205 -1.5596 38 1 1.6816 -11.9096 -0.5079 39 1 1.8275 -10.4364 -1.5171 40 1 3.8655 -10.0167 0.0913 41 1 -0.4372 -6.6272 0.8468 42 1 0.2436 -6.9654 2.4560 43 1 2.0669 -5.3454 2.0326 44 1 0.4770 -4.5627 1.8611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579943213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = -47.087944 kcal Electronic energy + Delta-G solvation = -21497.862110 eV Core-core repulsion = 18449.523727 eV Total energy + Delta-G solvation = -3048.338383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10334 -37.63218 -35.39626 -34.42025 -32.59355 -30.61287 -30.38198 -27.85502 -27.31574 -25.66259 -23.14538 -22.50542 -21.41844 -20.89877 -19.83740 -18.81176 -17.69657 -16.38824 -16.03227 -15.36153 -14.74526 -14.63884 -14.59629 -14.24648 -14.09615 -13.91509 -13.54267 -12.87839 -12.58700 -12.36114 -12.22593 -11.85150 -11.72827 -11.49035 -11.34221 -11.33224 -11.18433 -11.05711 -10.77398 -10.70441 -10.47647 -10.36888 -10.10543 -10.00018 -9.90327 -9.44988 -9.06923 -8.42211 -7.96770 -7.17604 -5.97758 -3.99305 3.37368 3.40619 3.44333 3.85119 4.26129 4.37209 4.40782 4.47824 4.77397 5.03575 5.09314 5.14138 5.22886 5.28157 5.33771 5.37972 5.38010 5.46719 5.56592 5.63709 5.69637 5.73779 5.78577 5.83482 5.91356 5.97497 6.12708 6.15020 6.22645 6.38847 6.46147 6.54706 6.74060 6.93077 7.28210 7.37249 7.40734 7.50739 7.68884 7.86360 8.21483 8.51935 8.72242 9.10597 9.65342 11.13388 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045375 B = 0.003519 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.933354 B = 7954.268640 C = 8170.671327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.087 3.913 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.507 5.507 15 C 0.087 3.913 16 H 0.085 0.915 17 C -0.168 4.168 18 C -0.118 4.118 19 C -0.161 4.161 20 C 0.109 3.891 21 H 0.057 0.943 22 O -0.534 6.534 23 C 0.054 3.946 24 C -0.099 4.099 25 H 0.261 0.739 26 H -0.017 1.017 27 H 0.027 0.973 28 H 0.328 0.672 29 H 0.026 0.974 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.364 0.636 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -23.893 -0.635 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.316 5.316 11 C -0.024 4.024 12 C -0.152 4.152 13 C -0.067 4.067 14 N -0.231 5.231 15 C -0.023 4.023 16 H 0.104 0.896 17 C -0.207 4.207 18 C -0.156 4.156 19 C -0.199 4.199 20 C 0.049 3.951 21 H 0.075 0.925 22 O -0.337 6.337 23 C -0.074 4.074 24 C -0.138 4.138 25 H 0.071 0.929 26 H 0.001 0.999 27 H 0.045 0.955 28 H 0.145 0.855 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.210 0.790 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.087 -23.169 0.462 23.199 hybrid contribution -0.588 0.368 -1.461 1.618 sum 0.499 -22.801 -1.000 22.828 Atomic orbital electron populations 1.69955 1.06085 1.26788 1.51088 1.24993 0.94867 0.99328 0.95435 0.86549 0.79414 0.82703 0.78646 1.20300 1.21403 1.20142 1.21188 0.93502 0.90349 1.50112 0.92026 1.19568 0.90608 0.87464 0.95518 1.60655 1.21015 1.01050 1.48856 1.21472 0.95137 0.90478 0.95293 1.21745 0.99959 0.93527 0.99996 1.22234 0.98247 0.97980 0.88200 1.61949 1.42771 0.99841 1.18497 1.22396 0.91567 0.89698 0.98591 0.89639 1.23215 0.99463 0.97426 1.00626 1.22315 0.95483 0.96545 1.01297 1.23191 0.96814 1.00220 0.99660 1.22434 0.85107 0.92546 0.95011 0.92546 1.86840 1.19958 1.35953 1.90983 1.22170 0.93557 0.92968 0.98706 1.21517 1.01080 0.93604 0.97594 0.92940 0.99920 0.95471 0.85535 0.95600 0.90460 0.92501 0.89044 0.95800 0.90036 0.91489 0.91439 0.91530 0.91571 0.90608 0.79039 0.95528 0.91376 0.90794 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -15.00 9.32 -34.44 -0.32 -15.33 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.20 5.32 5.24 -4.98 -0.03 5.30 16 10 N -0.69 -15.50 6.30 -107.86 -0.68 -16.18 16 11 C 0.09 1.66 2.56 -67.59 -0.17 1.48 16 12 C -0.11 -1.82 5.36 -26.65 -0.14 -1.97 16 13 C 0.06 0.85 4.25 -3.83 -0.02 0.83 16 14 N -0.51 -6.93 4.06 -225.36 -0.91 -7.84 16 15 C 0.09 0.95 2.94 -66.59 -0.20 0.75 16 16 H 0.09 0.89 7.93 -51.93 -0.41 0.48 16 17 C -0.17 -1.66 5.71 -25.07 -0.14 -1.80 16 18 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 19 C -0.16 -1.20 6.55 -25.08 -0.16 -1.37 16 20 C 0.11 0.99 3.96 -25.62 -0.10 0.89 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 O -0.53 -5.48 9.93 -35.23 -0.35 -5.83 16 23 C 0.05 0.80 5.26 -3.84 -0.02 0.78 16 24 C -0.10 -1.78 5.59 -26.65 -0.15 -1.93 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H -0.02 -0.49 8.06 -51.93 -0.42 -0.91 16 27 H 0.03 0.80 7.51 -51.93 -0.39 0.41 16 28 H 0.33 7.11 8.36 -39.29 -0.33 6.79 16 29 H 0.03 0.54 7.80 -51.93 -0.41 0.13 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.20 5.70 -51.93 -0.30 0.91 16 33 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16 34 H 0.08 0.92 5.14 -51.93 -0.27 0.66 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.36 2.24 9.10 45.56 0.41 2.65 16 41 H 0.03 0.39 7.83 -51.93 -0.41 -0.01 16 42 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.06 1.27 7.54 -51.93 -0.39 0.88 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -31.84 331.76 -9.92 -41.76 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.97 Total: 4.65 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.72 Total: -11.94 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.86 Total: -50.82 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.35 Total: -5.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.84 -9.92 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579943213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.332 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds