Wall clock time and date at job start Mon Mar 30 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47440 * 240.00342 * 3 2 1 5 5 H 1.48507 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47404 * 119.99575 * 3 2 1 7 7 C 1.37882 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99305 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46589 * 180.02562 * 9 7 2 11 11 C 1.46910 * 110.99702 * 179.97438 * 10 9 7 12 12 C 1.53119 * 109.51795 * 155.00046 * 11 10 9 13 13 C 1.53042 * 109.27480 * 177.62384 * 12 11 10 14 14 N 1.46844 * 109.52345 * 300.82222 * 13 12 11 15 15 C 1.46897 * 111.00130 * 185.84147 * 14 13 12 16 16 H 1.08998 * 110.05827 * 190.30659 * 15 14 13 17 17 C 1.54271 * 110.03097 * 311.72413 * 15 14 13 18 18 C 1.54888 * 104.19535 * 142.89318 * 17 15 14 19 19 C 1.54885 * 102.75067 * 322.05985 * 18 17 15 20 20 C 1.53872 * 110.03386 * 68.88852 * 15 14 13 21 21 H 1.09002 * 110.07464 * 121.41323 * 20 15 14 22 22 O 1.42900 * 110.03283 * 0.02562 * 20 15 14 23 23 C 1.46841 * 111.19985 * 61.73958 * 14 13 12 24 24 C 1.53036 * 109.52425 * 298.25811 * 23 14 13 25 25 H 0.96998 * 120.00180 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47501 * 59.99941 * 9 7 2 27 27 H 1.08996 * 109.47413 * 299.99786 * 9 7 2 28 28 H 1.00895 * 111.00327 * 303.95314 * 10 9 7 29 29 H 1.08994 * 109.52187 * 34.87533 * 11 10 9 30 30 H 1.09001 * 109.50632 * 57.68542 * 12 11 10 31 31 H 1.09003 * 109.53570 * 297.57904 * 12 11 10 32 32 H 1.09001 * 109.46246 * 180.80006 * 13 12 11 33 33 H 1.08998 * 109.46193 * 60.83807 * 13 12 11 34 34 H 1.09004 * 110.48677 * 24.21843 * 17 15 14 35 35 H 1.08997 * 110.48493 * 261.57656 * 17 15 14 36 36 H 1.09001 * 110.75401 * 80.37725 * 18 17 15 37 37 H 1.09006 * 110.75602 * 203.74056 * 18 17 15 38 38 H 1.09006 * 110.48677 * 156.62255 * 19 18 17 39 39 H 1.09001 * 110.48677 * 279.26008 * 19 18 17 40 40 H 0.96705 * 113.99693 * 181.37659 * 22 20 15 41 41 H 1.09000 * 109.46289 * 58.27873 * 23 14 13 42 42 H 1.08999 * 109.46200 * 178.24227 * 23 14 13 43 43 H 1.08995 * 109.50339 * 299.23862 * 24 23 14 44 44 H 1.09004 * 109.53272 * 179.13620 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6156 -0.0015 11 6 1.5054 -4.9070 -0.0020 12 6 2.4116 -5.9802 -0.6117 13 6 1.6999 -7.3339 -0.5553 14 7 1.3878 -7.6666 0.8405 15 6 0.8289 -9.0209 0.9466 16 1 0.4357 -9.1855 1.9498 17 6 -0.2899 -9.2142 -0.0979 18 6 -0.1230 -10.6812 -0.5661 19 6 1.4155 -10.8565 -0.5995 20 6 1.9132 -10.0651 0.6276 21 1 2.0470 -10.7366 1.4757 22 8 3.1469 -9.4119 0.3220 23 6 0.4808 -6.6751 1.4326 24 6 1.1560 -5.3017 1.4356 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8880 28 1 2.8412 -3.5482 -0.7823 29 1 0.5911 -4.8254 -0.5897 30 1 3.3422 -6.0345 -0.0468 31 1 2.6297 -5.7267 -1.6491 32 1 2.3482 -8.1028 -0.9757 33 1 0.7763 -7.2829 -1.1318 34 1 -0.1533 -8.5289 -0.9345 35 1 -1.2683 -9.0687 0.3599 36 1 -0.5747 -11.3687 0.1491 37 1 -0.5494 -10.8205 -1.5596 38 1 1.6816 -11.9096 -0.5079 39 1 1.8275 -10.4364 -1.5171 40 1 3.8655 -10.0167 0.0913 41 1 -0.4372 -6.6272 0.8468 42 1 0.2436 -6.9654 2.4560 43 1 2.0669 -5.3454 2.0326 44 1 0.4770 -4.5627 1.8611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579943213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:55 Heat of formation + Delta-G solvation = -71.123952 kcal Electronic energy + Delta-G solvation = -21498.904389 eV Core-core repulsion = 18449.523727 eV Total energy + Delta-G solvation = -3049.380662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06788 -38.84756 -36.63175 -35.59716 -34.53964 -32.12163 -31.72779 -28.82692 -28.52968 -27.22866 -24.66380 -23.91072 -22.98349 -21.88080 -20.92202 -20.00566 -18.57175 -18.44879 -16.94912 -16.69651 -16.31614 -16.24160 -15.66385 -15.48016 -15.31566 -15.05112 -14.70351 -14.36722 -14.08424 -13.83632 -13.57408 -13.22785 -13.04015 -12.86465 -12.74555 -12.63713 -12.35708 -12.26138 -12.02102 -11.98453 -11.93056 -11.71981 -11.52748 -11.33135 -11.20638 -10.99194 -10.66441 -10.49847 -9.13513 -9.02974 -8.23456 -6.35347 1.40041 1.44487 1.52429 2.39478 2.90389 3.09289 3.48228 3.53347 3.68866 3.72247 3.92586 3.94794 4.12651 4.29207 4.32893 4.35894 4.43483 4.48345 4.54344 4.61876 4.69554 4.71966 4.80593 4.83221 4.94842 4.97755 5.03461 5.08839 5.13706 5.16728 5.18610 5.24571 5.29820 5.37711 5.42880 5.45440 5.63396 6.02552 6.24647 6.29200 6.47154 6.72820 6.89034 7.14432 7.35792 8.88176 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045375 B = 0.003519 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.933354 B = 7954.268640 C = 8170.671327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.213 3.787 10 N -0.684 5.684 11 C 0.086 3.914 12 C -0.104 4.104 13 C 0.070 3.930 14 N -0.515 5.515 15 C 0.079 3.921 16 H 0.091 0.909 17 C -0.168 4.168 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.110 3.890 21 H 0.071 0.929 22 O -0.558 6.558 23 C 0.064 3.936 24 C -0.094 4.094 25 H 0.265 0.735 26 H -0.046 1.046 27 H -0.002 1.002 28 H 0.334 0.666 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.382 0.618 41 H 0.023 0.977 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -25.345 -0.771 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.085 3.915 10 N -0.314 5.314 11 C -0.025 4.025 12 C -0.142 4.142 13 C -0.057 4.057 14 N -0.238 5.238 15 C -0.030 4.030 16 H 0.109 0.891 17 C -0.207 4.207 18 C -0.152 4.152 19 C -0.190 4.190 20 C 0.051 3.949 21 H 0.088 0.912 22 O -0.364 6.364 23 C -0.065 4.065 24 C -0.133 4.133 25 H 0.074 0.926 26 H -0.028 1.028 27 H 0.016 0.984 28 H 0.151 0.849 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.230 0.770 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.196 -24.665 0.319 24.764 hybrid contribution -0.950 0.766 -1.400 1.857 sum 1.245 -23.899 -1.082 23.956 Atomic orbital electron populations 1.70093 1.07901 1.28109 1.51442 1.26003 0.95823 1.03528 0.94451 0.85339 0.78078 0.77354 0.79237 1.18960 1.20665 1.19265 1.21540 0.93840 0.91442 1.50806 0.91695 1.19189 0.90563 0.89036 0.92729 1.60579 1.20309 1.01384 1.49126 1.21584 0.94881 0.89789 0.96207 1.21661 0.98986 0.93624 0.99943 1.22153 0.98134 0.96793 0.88656 1.61926 1.42827 1.00934 1.18108 1.22597 0.92773 0.88325 0.99321 0.89097 1.23161 0.99072 0.98729 0.99691 1.22321 0.95967 0.95052 1.01846 1.23126 0.96247 1.01116 0.98532 1.22458 0.84266 0.91937 0.96275 0.91153 1.86760 1.20939 1.37523 1.91145 1.22024 0.93141 0.91488 0.99840 1.21431 1.00334 0.95220 0.96316 0.92581 1.02804 0.98393 0.84877 0.97408 0.91040 0.91692 0.87604 0.96032 0.91747 0.91551 0.90088 0.91087 0.89492 0.91238 0.76971 0.95864 0.89788 0.91638 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.38 13.29 21.45 0.28 -58.09 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -32.12 9.32 25.60 0.24 -31.88 16 8 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 9 C 0.21 12.14 5.24 85.56 0.45 12.59 16 10 N -0.68 -31.97 6.30 -495.16 -3.12 -35.09 16 11 C 0.09 3.38 2.56 44.99 0.12 3.49 16 12 C -0.10 -3.31 5.36 30.65 0.16 -3.14 16 13 C 0.07 1.90 4.25 86.33 0.37 2.26 16 14 N -0.51 -13.55 4.06 -866.90 -3.52 -17.07 16 15 C 0.08 1.57 2.94 45.64 0.13 1.70 16 16 H 0.09 1.71 7.93 -2.39 -0.02 1.69 16 17 C -0.17 -3.05 5.71 31.67 0.18 -2.87 16 18 C -0.11 -1.47 6.91 31.88 0.22 -1.25 16 19 C -0.15 -1.82 6.55 31.67 0.21 -1.61 16 20 C 0.11 1.71 3.96 31.32 0.12 1.83 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 O -0.56 -10.11 9.93 -148.98 -1.48 -11.59 16 23 C 0.06 1.87 5.26 86.33 0.45 2.32 16 24 C -0.09 -3.51 5.59 30.64 0.17 -3.34 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H -0.05 -2.81 8.06 -2.39 -0.02 -2.83 16 27 H 0.00 -0.13 7.51 -2.39 -0.02 -0.14 16 28 H 0.33 14.78 8.36 -89.70 -0.75 14.03 16 29 H 0.01 0.34 7.80 -2.39 -0.02 0.32 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.11 2.60 5.70 -2.39 -0.01 2.59 16 33 H 0.02 0.60 5.93 -2.39 -0.01 0.59 16 34 H 0.06 1.41 5.14 -2.38 -0.01 1.39 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 40 H 0.38 3.71 9.10 -74.05 -0.67 3.04 16 41 H 0.02 0.70 7.83 -2.39 -0.02 0.68 16 42 H 0.08 2.20 7.99 -2.39 -0.02 2.18 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.04 1.65 7.54 -2.38 -0.02 1.63 16 Total: -1.00 -69.43 331.76 -2.96 -72.39 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.44 Total: 21.31 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.29 Total: -19.42 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -6.35 Total: -110.24 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.48 Total: -11.59 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.43 -2.96 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579943213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.262 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds