Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46898 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99616 * 179.97438 * 10 9 7 12 12 C 1.53115 * 109.52495 * 274.68357 * 11 10 9 13 13 C 1.53039 * 109.27774 * 182.44110 * 12 11 10 14 14 N 1.46850 * 109.52587 * 59.18082 * 13 12 11 15 15 C 1.46893 * 111.00243 * 174.15905 * 14 13 12 16 16 H 1.09011 * 110.43495 * 64.90792 * 15 14 13 17 17 C 1.54888 * 110.48861 * 187.44809 * 15 14 13 18 18 C 1.55027 * 102.68283 * 156.51822 * 17 15 14 19 19 C 1.54260 * 104.28417 * 322.23423 * 18 17 15 20 20 C 1.53881 * 106.59676 * 23.51898 * 19 18 17 21 21 H 1.08999 * 110.03247 * 240.71721 * 20 19 18 22 22 O 1.42899 * 110.03464 * 119.28333 * 20 19 18 23 23 C 1.46847 * 111.19120 * 298.25536 * 14 13 12 24 24 C 1.53035 * 109.52391 * 61.74380 * 23 14 13 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.00897 * 110.99928 * 303.94599 * 10 9 7 29 29 H 1.09003 * 109.52238 * 34.87578 * 11 10 9 30 30 H 1.08998 * 109.50097 * 302.38024 * 12 11 10 31 31 H 1.08997 * 109.50527 * 62.50241 * 12 11 10 32 32 H 1.09000 * 109.46326 * 299.16156 * 13 12 11 33 33 H 1.09005 * 109.46082 * 179.19338 * 13 12 11 34 34 H 1.09004 * 110.75378 * 274.93545 * 17 15 14 35 35 H 1.08998 * 110.75252 * 38.30769 * 17 15 14 36 36 H 1.09009 * 110.52134 * 203.48787 * 18 17 15 37 37 H 1.09004 * 110.48010 * 80.96308 * 18 17 15 38 38 H 1.09002 * 110.03031 * 264.23943 * 19 18 17 39 39 H 1.08994 * 110.07802 * 142.82524 * 19 18 17 40 40 H 0.96709 * 113.99722 * 62.82933 * 22 20 19 41 41 H 1.08997 * 109.46529 * 301.72451 * 23 14 13 42 42 H 1.09006 * 109.45395 * 181.74984 * 23 14 13 43 43 H 1.09010 * 109.50509 * 180.87362 * 24 23 14 44 44 H 1.09005 * 109.50621 * 60.75874 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2057 -3.6157 -0.0131 11 6 1.5054 -4.9070 -0.0128 12 6 1.1648 -5.3041 1.4262 13 6 0.4902 -6.6778 1.4250 14 7 1.3941 -7.6680 0.8259 15 6 0.8365 -9.0227 0.9333 16 1 -0.0784 -9.1054 0.3464 17 6 1.8746 -10.0746 0.4698 18 6 1.4027 -11.3611 1.1948 19 6 0.9250 -10.8663 2.5756 20 6 0.5650 -9.3795 2.4093 21 1 1.1891 -8.7690 3.0619 22 8 -0.8151 -9.1726 2.7171 23 6 1.6975 -7.3330 -0.5712 24 6 2.4082 -5.9789 -0.6297 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 2.8369 -3.5465 -0.7972 29 1 0.5880 -4.8240 -0.5957 30 1 2.0793 -5.3483 2.0176 31 1 0.4876 -4.5665 1.8567 32 1 -0.4313 -6.6294 0.8449 33 1 0.2593 -6.9699 2.4495 34 1 1.8380 -10.2028 -0.6121 35 1 2.8775 -9.7960 0.7932 36 1 2.2298 -12.0624 1.3060 37 1 0.5804 -11.8257 0.6506 38 1 1.7239 -10.9773 3.3088 39 1 0.0473 -11.4299 2.8919 40 1 -1.0493 -9.3798 3.6322 41 1 0.7704 -7.2815 -1.1420 42 1 2.3438 -8.1009 -0.9966 43 1 2.6194 -5.7232 -1.6681 44 1 3.3423 -6.0336 -0.0706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579943214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -65.890079 kcal Electronic energy + Delta-G solvation = -21229.591952 eV Core-core repulsion = 18180.438248 eV Total energy + Delta-G solvation = -3049.153704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.90940 -37.94046 -35.60195 -34.73578 -32.86794 -30.76341 -30.53357 -27.94411 -27.15703 -25.35193 -23.15626 -22.69057 -21.45686 -20.72250 -20.02673 -19.40301 -17.50244 -16.83971 -16.51484 -15.69843 -14.89905 -14.73249 -14.55107 -14.07730 -14.00760 -13.64882 -13.44585 -13.18213 -12.91490 -12.70216 -12.38486 -12.03750 -11.95208 -11.85221 -11.45535 -11.28080 -11.01397 -10.93204 -10.82674 -10.72085 -10.63325 -10.47643 -10.19955 -10.12965 -10.07033 -9.82082 -8.58113 -8.38249 -8.29803 -7.36581 -6.35092 -4.03657 3.46273 3.49972 3.65890 3.69860 4.05115 4.24621 4.52963 4.55063 4.70214 4.94234 5.02970 5.04521 5.19788 5.21889 5.23966 5.30365 5.41893 5.44551 5.52712 5.56945 5.59243 5.63732 5.69954 5.74753 5.80661 5.86340 5.95286 5.97869 6.07587 6.15729 6.26178 6.35733 6.54281 6.76042 7.02194 7.14230 7.15404 7.21060 7.45502 7.84979 8.20610 8.51703 8.61928 8.90260 9.68378 11.04750 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043232 B = 0.003395 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.518556 B = 8244.945694 C = 8615.874199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.056 0.944 9 C 0.185 3.815 10 N -0.678 5.678 11 C 0.085 3.915 12 C -0.101 4.101 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.086 3.914 16 H 0.054 0.946 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.154 4.154 20 C 0.103 3.897 21 H 0.071 0.929 22 O -0.567 6.567 23 C 0.061 3.939 24 C -0.116 4.116 25 H 0.267 0.733 26 H 0.018 0.982 27 H -0.027 1.027 28 H 0.331 0.669 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.376 0.624 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -23.452 3.083 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.633 4.633 8 H 0.074 0.926 9 C 0.057 3.943 10 N -0.309 5.309 11 C -0.026 4.026 12 C -0.139 4.139 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.023 4.023 16 H 0.072 0.928 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.193 4.193 20 C 0.044 3.956 21 H 0.089 0.911 22 O -0.372 6.372 23 C -0.067 4.067 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.036 0.964 27 H -0.009 1.009 28 H 0.148 0.852 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.223 0.777 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.551 -21.577 3.393 21.990 hybrid contribution -1.003 -1.906 -0.748 2.280 sum 1.548 -23.483 2.644 23.682 Atomic orbital electron populations 1.70760 1.06900 1.30439 1.47071 1.25876 0.96507 1.02786 0.93868 0.83437 0.74532 0.74776 0.76768 1.21413 1.21458 1.21111 1.22047 0.94841 0.91308 1.55091 0.92563 1.19685 0.91203 0.89038 0.94328 1.60575 1.20895 1.00661 1.48737 1.21506 0.95167 0.90438 0.95472 1.21556 1.01113 0.93930 0.97343 1.22121 0.93209 0.91960 0.99510 1.62079 1.44783 1.00933 1.17629 1.22405 0.96276 0.89131 0.94461 0.92843 1.22549 0.99401 0.93444 0.99887 1.22278 1.00705 0.97344 0.95532 1.22846 1.01659 0.96482 0.98272 1.22488 0.82409 0.94322 0.96431 0.91096 1.86564 1.26060 1.90689 1.33906 1.22041 0.98909 0.97595 0.88187 1.21760 0.99846 0.93332 1.00439 0.92294 0.96387 1.00907 0.85226 0.95457 0.90787 0.91682 0.95279 0.90515 0.91295 0.89980 0.91351 0.91590 0.91175 0.91021 0.77669 0.95258 0.90793 0.91964 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.66 13.65 55.43 0.76 -27.90 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.08 25.92 29.90 -169.99 -5.08 20.84 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.59 -17.47 9.32 -34.44 -0.32 -17.79 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.18 4.98 4.55 -4.97 -0.02 4.95 16 10 N -0.68 -15.15 6.30 -107.86 -0.68 -15.83 16 11 C 0.08 1.58 2.56 -67.59 -0.17 1.40 16 12 C -0.10 -1.77 5.59 -26.65 -0.15 -1.92 16 13 C 0.06 0.89 5.13 -3.83 -0.02 0.88 16 14 N -0.53 -6.99 4.49 -224.70 -1.01 -8.00 16 15 C 0.09 0.98 2.31 -66.06 -0.15 0.82 16 16 H 0.05 0.69 8.08 -51.92 -0.42 0.27 16 17 C -0.11 -1.04 5.39 -24.66 -0.13 -1.17 16 18 C -0.12 -0.92 6.83 -25.00 -0.17 -1.09 16 19 C -0.15 -1.19 6.61 -25.61 -0.17 -1.36 16 20 C 0.10 1.03 2.88 -25.61 -0.07 0.95 16 21 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 22 O -0.57 -5.90 12.53 -35.23 -0.44 -6.34 16 23 C 0.06 0.80 5.32 -3.83 -0.02 0.78 16 24 C -0.12 -1.73 5.36 -26.65 -0.14 -1.87 16 25 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 26 H 0.02 0.52 7.38 -51.93 -0.38 0.13 16 27 H -0.03 -0.76 7.92 -51.93 -0.41 -1.17 16 28 H 0.33 7.09 8.36 -39.29 -0.33 6.77 16 29 H 0.03 0.55 7.80 -51.93 -0.41 0.15 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.25 7.54 -51.93 -0.39 0.86 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.09 6.15 -51.93 -0.32 0.77 16 34 H 0.07 0.58 7.82 -51.93 -0.41 0.18 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.51 7.95 -51.93 -0.41 0.10 16 40 H 0.38 2.31 9.11 45.56 0.42 2.73 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.82 6.84 -51.93 -0.36 0.47 16 43 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -32.43 336.31 -10.15 -42.58 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.11 Total: 4.72 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.64 Total: -15.14 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.93 Total: -51.73 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.44 Total: -6.34 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.43 -10.15 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579943214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.310 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds