Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46898 * 109.46982 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99616 * 179.97438 * 10 9 7 12 12 C 1.53115 * 109.52495 * 274.68357 * 11 10 9 13 13 C 1.53039 * 109.27774 * 182.44110 * 12 11 10 14 14 N 1.46850 * 109.52587 * 59.18082 * 13 12 11 15 15 C 1.46893 * 111.00243 * 174.15905 * 14 13 12 16 16 H 1.09011 * 110.43495 * 64.90792 * 15 14 13 17 17 C 1.54888 * 110.48861 * 187.44809 * 15 14 13 18 18 C 1.55027 * 102.68283 * 156.51822 * 17 15 14 19 19 C 1.54260 * 104.28417 * 322.23423 * 18 17 15 20 20 C 1.53881 * 106.59676 * 23.51898 * 19 18 17 21 21 H 1.08999 * 110.03247 * 240.71721 * 20 19 18 22 22 O 1.42899 * 110.03464 * 119.28333 * 20 19 18 23 23 C 1.46847 * 111.19120 * 298.25536 * 14 13 12 24 24 C 1.53035 * 109.52391 * 61.74380 * 23 14 13 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.00897 * 110.99928 * 303.94599 * 10 9 7 29 29 H 1.09003 * 109.52238 * 34.87578 * 11 10 9 30 30 H 1.08998 * 109.50097 * 302.38024 * 12 11 10 31 31 H 1.08997 * 109.50527 * 62.50241 * 12 11 10 32 32 H 1.09000 * 109.46326 * 299.16156 * 13 12 11 33 33 H 1.09005 * 109.46082 * 179.19338 * 13 12 11 34 34 H 1.09004 * 110.75378 * 274.93545 * 17 15 14 35 35 H 1.08998 * 110.75252 * 38.30769 * 17 15 14 36 36 H 1.09009 * 110.52134 * 203.48787 * 18 17 15 37 37 H 1.09004 * 110.48010 * 80.96308 * 18 17 15 38 38 H 1.09002 * 110.03031 * 264.23943 * 19 18 17 39 39 H 1.08994 * 110.07802 * 142.82524 * 19 18 17 40 40 H 0.96709 * 113.99722 * 62.82933 * 22 20 19 41 41 H 1.08997 * 109.46529 * 301.72451 * 23 14 13 42 42 H 1.09006 * 109.45395 * 181.74984 * 23 14 13 43 43 H 1.09010 * 109.50509 * 180.87362 * 24 23 14 44 44 H 1.09005 * 109.50621 * 60.75874 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2057 -3.6157 -0.0131 11 6 1.5054 -4.9070 -0.0128 12 6 1.1648 -5.3041 1.4262 13 6 0.4902 -6.6778 1.4250 14 7 1.3941 -7.6680 0.8259 15 6 0.8365 -9.0227 0.9333 16 1 -0.0784 -9.1054 0.3464 17 6 1.8746 -10.0746 0.4698 18 6 1.4027 -11.3611 1.1948 19 6 0.9250 -10.8663 2.5756 20 6 0.5650 -9.3795 2.4093 21 1 1.1891 -8.7690 3.0619 22 8 -0.8151 -9.1726 2.7171 23 6 1.6975 -7.3330 -0.5712 24 6 2.4082 -5.9789 -0.6297 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 2.8369 -3.5465 -0.7972 29 1 0.5880 -4.8240 -0.5957 30 1 2.0793 -5.3483 2.0176 31 1 0.4876 -4.5665 1.8567 32 1 -0.4313 -6.6294 0.8449 33 1 0.2593 -6.9699 2.4495 34 1 1.8380 -10.2028 -0.6121 35 1 2.8775 -9.7960 0.7932 36 1 2.2298 -12.0624 1.3060 37 1 0.5804 -11.8257 0.6506 38 1 1.7239 -10.9773 3.3088 39 1 0.0473 -11.4299 2.8919 40 1 -1.0493 -9.3798 3.6322 41 1 0.7704 -7.2815 -1.1420 42 1 2.3438 -8.1009 -0.9966 43 1 2.6194 -5.7232 -1.6681 44 1 3.3423 -6.0336 -0.0706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579943214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -91.025690 kcal Electronic energy + Delta-G solvation = -21230.681914 eV Core-core repulsion = 18180.438248 eV Total energy + Delta-G solvation = -3050.243666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91386 -39.09851 -36.95744 -35.87771 -34.78003 -32.12375 -31.97446 -28.76040 -28.42918 -27.04896 -24.71754 -24.16875 -23.11971 -21.48148 -20.99659 -20.72843 -19.06209 -18.29528 -17.49133 -16.53954 -16.44276 -15.98619 -15.85794 -15.68986 -15.52380 -15.15620 -14.73790 -14.24655 -14.15319 -13.97779 -13.75324 -13.40599 -13.21537 -13.02708 -12.95585 -12.62987 -12.50429 -12.23324 -12.01485 -11.94288 -11.91682 -11.72160 -11.62320 -11.38701 -11.16595 -10.87117 -10.76029 -10.64573 -9.41302 -9.29630 -8.74703 -6.45663 1.52390 1.62238 1.80592 2.54303 2.71570 3.10466 3.31096 3.32664 3.49520 3.71837 3.82651 3.88275 4.04521 4.16071 4.19658 4.33469 4.37701 4.40752 4.49791 4.51553 4.55726 4.66282 4.69665 4.72540 4.75115 4.83162 4.88373 4.96906 4.98780 5.03869 5.09167 5.14851 5.16521 5.19602 5.30630 5.41169 5.72517 5.97454 6.00257 6.12047 6.35119 6.52158 6.65872 6.87118 7.37559 8.64777 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043232 B = 0.003395 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.518556 B = 8244.945694 C = 8615.874199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.129 2.871 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.282 1.282 7 C -0.611 4.611 8 H 0.058 0.942 9 C 0.198 3.802 10 N -0.676 5.676 11 C 0.082 3.918 12 C -0.095 4.095 13 C 0.073 3.927 14 N -0.528 5.528 15 C 0.080 3.920 16 H 0.036 0.964 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.148 4.148 20 C 0.101 3.899 21 H 0.063 0.937 22 O -0.586 6.586 23 C 0.064 3.936 24 C -0.105 4.105 25 H 0.252 0.748 26 H -0.007 1.007 27 H -0.050 1.050 28 H 0.337 0.663 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.013 0.987 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.393 0.607 41 H 0.022 0.978 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -24.965 3.152 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.949 3.051 4 H -0.198 1.198 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.649 4.649 8 H 0.076 0.924 9 C 0.070 3.930 10 N -0.307 5.307 11 C -0.028 4.028 12 C -0.133 4.133 13 C -0.055 4.055 14 N -0.253 5.253 15 C -0.029 4.029 16 H 0.054 0.946 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.186 4.186 20 C 0.042 3.958 21 H 0.081 0.919 22 O -0.395 6.395 23 C -0.064 4.064 24 C -0.143 4.143 25 H 0.061 0.939 26 H 0.011 0.989 27 H -0.033 1.033 28 H 0.155 0.845 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.243 0.757 41 H 0.040 0.960 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.331 -23.143 3.473 23.800 hybrid contribution -1.598 -1.497 -0.750 2.314 sum 2.733 -24.640 2.723 24.940 Atomic orbital electron populations 1.70902 1.08019 1.29570 1.48916 1.27581 0.96513 1.07042 0.92484 0.82801 0.74092 0.70383 0.77864 1.19766 1.19084 1.20718 1.22406 0.95119 0.92457 1.54907 0.92362 1.19357 0.91224 0.90416 0.92006 1.60490 1.20167 1.00978 1.49039 1.21632 0.95008 0.89901 0.96253 1.21461 1.00517 0.94972 0.96369 1.21907 0.92521 0.91053 1.00039 1.62114 1.44117 1.01482 1.17582 1.22562 0.96383 0.88386 0.95521 0.94610 1.22544 0.98515 0.93165 1.00558 1.22290 1.01342 0.96858 0.95042 1.22799 1.02410 0.94582 0.98813 1.22500 0.82145 0.95916 0.95225 0.91883 1.86522 1.26350 1.91010 1.35620 1.22060 0.98939 0.97194 0.88229 1.21686 0.99043 0.92893 1.00712 0.93921 0.98886 1.03296 0.84516 0.97494 0.90964 0.94435 0.96842 0.89683 0.90525 0.89872 0.89612 0.91506 0.89975 0.90243 0.75689 0.95996 0.87840 0.90804 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.97 13.65 21.45 0.29 -59.68 16 2 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 3 Si 1.13 51.49 29.90 68.60 2.05 53.55 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.61 -36.44 9.32 25.60 0.24 -36.20 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.20 11.12 4.55 85.56 0.39 11.51 16 10 N -0.68 -30.83 6.30 -495.17 -3.12 -33.95 16 11 C 0.08 3.13 2.56 44.99 0.12 3.24 16 12 C -0.09 -3.43 5.59 30.65 0.17 -3.26 16 13 C 0.07 2.22 5.13 86.33 0.44 2.66 16 14 N -0.53 -13.43 4.49 -864.83 -3.88 -17.30 16 15 C 0.08 1.70 2.31 45.99 0.11 1.81 16 16 H 0.04 0.91 8.08 -2.38 -0.02 0.89 16 17 C -0.11 -1.70 5.39 31.93 0.17 -1.53 16 18 C -0.12 -1.44 6.83 31.71 0.22 -1.23 16 19 C -0.15 -1.91 6.61 31.32 0.21 -1.70 16 20 C 0.10 1.88 2.88 31.32 0.09 1.97 16 21 H 0.06 1.27 7.55 -2.39 -0.02 1.25 16 22 O -0.59 -11.69 12.53 -148.98 -1.87 -13.56 16 23 C 0.06 1.58 5.32 86.33 0.46 2.04 16 24 C -0.11 -3.03 5.36 30.64 0.16 -2.87 16 25 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 26 H -0.01 -0.42 7.38 -2.39 -0.02 -0.43 16 27 H -0.05 -3.02 7.92 -2.39 -0.02 -3.04 16 28 H 0.34 14.50 8.36 -89.70 -0.75 13.75 16 29 H 0.01 0.30 7.80 -2.39 -0.02 0.28 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 2.43 6.15 -2.38 -0.01 2.41 16 34 H 0.08 1.07 7.82 -2.38 -0.02 1.05 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 37 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.92 7.95 -2.39 -0.02 0.90 16 40 H 0.39 4.40 9.11 -74.05 -0.67 3.72 16 41 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 2.00 6.84 -2.38 -0.02 1.98 16 43 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -71.03 336.31 -3.64 -74.67 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.35 Total: 21.71 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 3.23 Total: -25.43 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -6.71 Total: -110.93 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.87 Total: -13.56 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.55 kcal Total: -71.03 -3.64 -74.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579943214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.360 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds