Wall clock time and date at job start Mon Mar 30 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00060 * 2 1 4 4 C 1.50702 * 109.46730 * 269.99815 * 3 2 1 5 5 H 1.07991 * 120.00408 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99658 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99973 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99907 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47093 * 90.00512 * 8 6 4 10 10 H 1.48503 * 109.47135 * 209.99957 * 8 6 4 11 11 H 1.48500 * 109.47207 * 330.00266 * 8 6 4 12 12 C 1.34774 * 120.00068 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00332 * 180.02562 * 12 2 1 14 14 C 1.50707 * 119.99930 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.46858 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46734 * 179.97438 * 15 14 12 17 17 C 1.46900 * 110.99758 * 179.97438 * 16 15 14 18 18 H 1.09002 * 112.85196 * 23.80880 * 17 16 15 19 19 C 1.53780 * 113.61890 * 252.49449 * 17 16 15 20 20 C 1.53948 * 87.11633 * 220.09431 * 19 17 16 21 21 C 1.53780 * 87.01697 * 25.36271 * 20 19 17 22 22 C 1.53006 * 113.61448 * 220.04552 * 21 20 19 23 23 C 1.52999 * 113.61453 * 89.23216 * 21 20 19 24 24 H 1.08997 * 109.47698 * 270.00134 * 1 2 3 25 25 H 1.09002 * 109.47059 * 30.00296 * 1 2 3 26 26 H 1.09003 * 109.47228 * 150.00121 * 1 2 3 27 27 H 1.08998 * 109.47071 * 29.99394 * 3 2 1 28 28 H 1.08994 * 109.47126 * 149.99965 * 3 2 1 29 29 H 0.97001 * 120.00052 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46917 * 60.00304 * 14 12 2 31 31 H 1.08996 * 109.46923 * 299.99996 * 14 12 2 32 32 H 1.08997 * 109.47393 * 60.00246 * 15 14 12 33 33 H 1.08996 * 109.47065 * 299.99559 * 15 14 12 34 34 H 1.00891 * 111.00561 * 303.95338 * 16 15 14 35 35 H 1.09005 * 113.61411 * 334.57740 * 19 17 16 36 36 H 1.09010 * 113.61089 * 105.38435 * 19 17 16 37 37 H 1.09000 * 113.61139 * 270.84362 * 20 19 17 38 38 H 1.08995 * 113.66591 * 139.89433 * 20 19 17 39 39 H 1.08995 * 109.47299 * 279.14367 * 22 21 20 40 40 H 1.09004 * 109.46791 * 39.13858 * 22 21 20 41 41 H 1.08991 * 109.46960 * 159.13712 * 22 21 20 42 42 H 1.08993 * 109.47603 * 200.86038 * 23 21 20 43 43 H 1.09000 * 109.46814 * 320.86477 * 23 21 20 44 44 H 1.09002 * 109.47143 * 80.85926 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4961 11 1 3.5561 2.2194 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3796 -3.6352 0.0027 16 7 1.6451 -4.9074 0.0045 17 6 2.5696 -6.0490 0.0049 18 1 3.5504 -5.7992 0.4094 19 6 2.6270 -6.7958 -1.3381 20 6 2.6791 -8.1001 -0.5220 21 6 1.9652 -7.3308 0.6020 22 6 2.4899 -7.6621 2.0006 23 6 0.4390 -7.3890 0.5110 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5137 28 1 3.1498 1.1384 0.5138 29 1 4.0301 4.4439 -0.8505 30 1 0.7584 -2.5307 -0.8880 31 1 0.7590 -2.5294 0.8919 32 1 3.0062 -3.5767 0.8926 33 1 3.0062 -3.5783 -0.8873 34 1 1.0089 -4.9566 0.7860 35 1 1.7207 -6.6916 -1.9348 36 1 3.5345 -6.5986 -1.9089 37 1 3.6906 -8.4129 -0.2629 38 1 2.0815 -8.9064 -0.9471 39 1 2.0402 -8.5928 2.3464 40 1 3.5737 -7.7735 1.9650 41 1 2.2299 -6.8560 2.6865 42 1 0.0096 -6.5604 1.0740 43 1 0.1343 -7.3155 -0.5329 44 1 0.0859 -8.3325 0.9270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581892362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:10 Heat of formation + Delta-G solvation = -28.076629 kcal Electronic energy + Delta-G solvation = -20663.426330 eV Core-core repulsion = 17615.912340 eV Total energy + Delta-G solvation = -3047.513990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07790 -38.92439 -35.13486 -34.55937 -32.59571 -30.87014 -30.03525 -27.73303 -27.57745 -25.77004 -24.44489 -23.10979 -22.38679 -21.54229 -18.62380 -18.01024 -16.56384 -16.38414 -16.20747 -15.37388 -15.27651 -14.94427 -14.71133 -14.13383 -13.84971 -13.49241 -13.36021 -12.95971 -12.51250 -12.39091 -12.24941 -12.15066 -12.12068 -11.87103 -11.70352 -11.65134 -11.31602 -11.11562 -11.05155 -10.87404 -10.73098 -10.54635 -10.25480 -10.15361 -10.12787 -9.60263 -8.85398 -8.41984 -8.41800 -7.60706 -6.02464 -4.07123 3.31489 3.37850 3.41787 3.49978 3.84572 4.22936 4.29994 4.41437 4.48399 4.71149 4.79906 5.00499 5.19849 5.26835 5.31486 5.33152 5.38004 5.44324 5.47709 5.51999 5.60236 5.65015 5.65969 5.79174 5.81670 5.85893 5.91050 5.95829 6.00620 6.12524 6.18449 6.25302 6.29727 6.35146 7.07525 7.08904 7.36560 7.46845 7.57565 7.94280 8.25908 8.45944 8.92788 9.13760 9.58009 11.05652 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.003330 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.353123 B = 8406.768341 C = 8719.883082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.136 4.136 15 C 0.074 3.926 16 N -0.678 5.678 17 C 0.068 3.932 18 H 0.073 0.927 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.121 4.121 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.337 0.663 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -21.441 3.635 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.177 4.177 15 C -0.055 4.055 16 N -0.309 5.309 17 C -0.042 4.042 18 H 0.091 0.909 19 C -0.165 4.165 20 C -0.172 4.172 21 C -0.093 4.093 22 C -0.196 4.196 23 C -0.178 4.178 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.872 -21.229 3.008 22.516 hybrid contribution 0.439 0.574 -0.045 0.724 sum -6.433 -20.655 2.964 21.836 Atomic orbital electron populations 1.21632 0.81458 1.02636 1.00306 1.48160 1.06181 1.07890 1.71369 1.19276 0.92536 0.78195 0.97469 1.21450 1.36427 1.06214 0.92349 0.92456 1.24947 0.95370 0.96408 0.97467 1.69935 1.38488 1.14335 1.30740 0.86489 0.77660 0.78586 0.84652 1.20640 1.21087 1.19860 1.20309 0.88077 0.85185 0.77399 1.90664 1.14025 1.87370 1.50315 1.21610 0.99295 0.92965 1.03788 1.21713 0.94855 0.86957 1.01964 1.60677 1.19600 1.01388 1.49240 1.23110 0.95163 0.88826 0.97108 0.90947 1.23019 1.02364 0.94675 0.96429 1.22959 1.00335 0.96971 0.96936 1.22127 0.96217 0.96339 0.94611 1.21778 1.00772 1.01292 0.95785 1.21460 0.92693 1.01140 1.02516 0.93878 0.90867 0.92284 0.95086 0.93911 0.92739 0.88725 0.90057 0.94551 0.90193 0.84375 0.89355 0.91854 0.90378 0.91321 0.92550 0.92590 0.92733 0.92289 0.91777 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.84 0.61 1.96 16 2 N -0.60 -13.07 2.86 -182.96 -0.52 -13.60 16 3 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 4 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.50 10.64 7.67 -10.98 -0.08 10.56 16 13 O -0.55 -13.98 15.56 5.55 0.09 -13.89 16 14 C -0.14 -2.02 4.51 -27.88 -0.13 -2.15 16 15 C 0.07 1.08 4.82 -3.82 -0.02 1.06 16 16 N -0.68 -7.74 6.07 -105.87 -0.64 -8.38 16 17 C 0.07 0.72 3.60 -66.90 -0.24 0.48 16 18 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 19 C -0.13 -1.26 7.54 -25.83 -0.19 -1.45 16 20 C -0.13 -1.11 7.22 -25.83 -0.19 -1.30 16 21 C -0.09 -0.78 1.27 -153.69 -0.20 -0.98 16 22 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 23 C -0.12 -0.94 8.42 37.16 0.31 -0.63 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.32 7.40 -51.93 -0.38 0.93 16 31 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.34 3.39 6.96 -39.30 -0.27 3.12 16 35 H 0.09 0.91 7.64 -51.93 -0.40 0.51 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.08 0.61 7.99 -51.93 -0.41 0.20 16 38 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.44 7.98 -51.93 -0.41 0.02 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 43 H 0.06 0.53 7.34 -51.93 -0.38 0.15 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -32.82 352.24 -8.20 -41.02 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.92 Total: -0.74 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.23 Total: -0.59 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.43 Total: -48.28 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.82 -8.20 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581892362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.948 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds