Wall clock time and date at job start Mon Mar 30 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00060 * 2 1 4 4 C 1.50702 * 109.46730 * 269.99815 * 3 2 1 5 5 H 1.07991 * 120.00408 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99658 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99973 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99907 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47093 * 90.00512 * 8 6 4 10 10 H 1.48503 * 109.47135 * 209.99957 * 8 6 4 11 11 H 1.48500 * 109.47207 * 330.00266 * 8 6 4 12 12 C 1.34774 * 120.00068 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00332 * 180.02562 * 12 2 1 14 14 C 1.50707 * 119.99930 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.46858 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.46734 * 179.97438 * 15 14 12 17 17 C 1.46900 * 110.99758 * 179.97438 * 16 15 14 18 18 H 1.09002 * 112.85196 * 23.80880 * 17 16 15 19 19 C 1.53780 * 113.61890 * 252.49449 * 17 16 15 20 20 C 1.53948 * 87.11633 * 220.09431 * 19 17 16 21 21 C 1.53780 * 87.01697 * 25.36271 * 20 19 17 22 22 C 1.53006 * 113.61448 * 220.04552 * 21 20 19 23 23 C 1.52999 * 113.61453 * 89.23216 * 21 20 19 24 24 H 1.08997 * 109.47698 * 270.00134 * 1 2 3 25 25 H 1.09002 * 109.47059 * 30.00296 * 1 2 3 26 26 H 1.09003 * 109.47228 * 150.00121 * 1 2 3 27 27 H 1.08998 * 109.47071 * 29.99394 * 3 2 1 28 28 H 1.08994 * 109.47126 * 149.99965 * 3 2 1 29 29 H 0.97001 * 120.00052 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46917 * 60.00304 * 14 12 2 31 31 H 1.08996 * 109.46923 * 299.99996 * 14 12 2 32 32 H 1.08997 * 109.47393 * 60.00246 * 15 14 12 33 33 H 1.08996 * 109.47065 * 299.99559 * 15 14 12 34 34 H 1.00891 * 111.00561 * 303.95338 * 16 15 14 35 35 H 1.09005 * 113.61411 * 334.57740 * 19 17 16 36 36 H 1.09010 * 113.61089 * 105.38435 * 19 17 16 37 37 H 1.09000 * 113.61139 * 270.84362 * 20 19 17 38 38 H 1.08995 * 113.66591 * 139.89433 * 20 19 17 39 39 H 1.08995 * 109.47299 * 279.14367 * 22 21 20 40 40 H 1.09004 * 109.46791 * 39.13858 * 22 21 20 41 41 H 1.08991 * 109.46960 * 159.13712 * 22 21 20 42 42 H 1.08993 * 109.47603 * 200.86038 * 23 21 20 43 43 H 1.09000 * 109.46814 * 320.86477 * 23 21 20 44 44 H 1.09002 * 109.47143 * 80.85926 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3079 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4961 11 1 3.5561 2.2194 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 2.3796 -3.6352 0.0027 16 7 1.6451 -4.9074 0.0045 17 6 2.5696 -6.0490 0.0049 18 1 3.5504 -5.7992 0.4094 19 6 2.6270 -6.7958 -1.3381 20 6 2.6791 -8.1001 -0.5220 21 6 1.9652 -7.3308 0.6020 22 6 2.4899 -7.6621 2.0006 23 6 0.4390 -7.3890 0.5110 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6083 2.0284 0.5137 28 1 3.1498 1.1384 0.5138 29 1 4.0301 4.4439 -0.8505 30 1 0.7584 -2.5307 -0.8880 31 1 0.7590 -2.5294 0.8919 32 1 3.0062 -3.5767 0.8926 33 1 3.0062 -3.5783 -0.8873 34 1 1.0089 -4.9566 0.7860 35 1 1.7207 -6.6916 -1.9348 36 1 3.5345 -6.5986 -1.9089 37 1 3.6906 -8.4129 -0.2629 38 1 2.0815 -8.9064 -0.9471 39 1 2.0402 -8.5928 2.3464 40 1 3.5737 -7.7735 1.9650 41 1 2.2299 -6.8560 2.6865 42 1 0.0096 -6.5604 1.0740 43 1 0.1343 -7.3155 -0.5329 44 1 0.0859 -8.3325 0.9270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581892362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:09 Heat of formation + Delta-G solvation = -49.751952 kcal Electronic energy + Delta-G solvation = -20664.366243 eV Core-core repulsion = 17615.912340 eV Total energy + Delta-G solvation = -3048.453903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93892 -40.51300 -36.70763 -35.91511 -34.72728 -31.71120 -31.23706 -29.47617 -28.27699 -27.30025 -25.80117 -24.48356 -23.36530 -22.77904 -20.04512 -18.97912 -18.71736 -17.87567 -17.30299 -17.04438 -16.55239 -16.11180 -15.96458 -15.61388 -15.07840 -14.51485 -14.32201 -14.02500 -13.95561 -13.82337 -13.52806 -13.43260 -13.24099 -13.02671 -12.95124 -12.85326 -12.73695 -12.49732 -12.32858 -12.22491 -12.21586 -12.02242 -11.71567 -11.52718 -11.00813 -10.90841 -10.65721 -10.58907 -9.42949 -9.38521 -8.23986 -6.39248 1.35287 1.38570 1.49060 1.84286 2.30002 2.43417 3.05185 3.22808 3.52194 3.68484 3.84397 3.96008 4.01711 4.08118 4.26818 4.36726 4.42559 4.54870 4.64067 4.69930 4.73117 4.81090 4.83495 4.94076 4.94677 4.96849 5.00921 5.05731 5.07934 5.11127 5.19530 5.21714 5.23029 5.34570 5.55171 5.55346 5.63123 5.83651 6.04858 6.08858 6.50088 6.68412 6.79398 7.26847 7.48546 8.83117 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.003330 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.353123 B = 8406.768341 C = 8719.883082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.492 3.508 13 O -0.604 6.604 14 C -0.116 4.116 15 C 0.085 3.915 16 N -0.666 5.666 17 C 0.056 3.944 18 H 0.057 0.943 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.083 4.083 22 C -0.139 4.139 23 C -0.120 4.120 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.024 0.976 28 H -0.005 1.005 29 H 0.268 0.732 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.348 0.652 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.690 -23.042 3.039 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.281 3.719 13 O -0.486 6.486 14 C -0.156 4.156 15 C -0.045 4.045 16 N -0.299 5.299 17 C -0.054 4.054 18 H 0.075 0.925 19 C -0.168 4.168 20 C -0.165 4.165 21 C -0.084 4.084 22 C -0.196 4.196 23 C -0.177 4.177 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.042 0.958 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.169 0.831 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.102 -22.852 2.424 24.718 hybrid contribution 1.119 1.054 0.189 1.549 sum -7.983 -21.798 2.612 23.361 Atomic orbital electron populations 1.21950 0.77682 1.04098 1.02660 1.48210 1.08541 1.06363 1.71154 1.18745 0.91057 0.80576 0.95991 1.21722 1.36935 1.06579 0.93075 0.92903 1.25895 0.94842 0.96406 1.02152 1.70052 1.38947 1.14805 1.33107 0.85386 0.78155 0.78202 0.78896 1.18610 1.20562 1.19818 1.21440 0.87806 0.86841 0.75766 1.90632 1.16892 1.88312 1.52745 1.21528 0.98832 0.88804 1.06406 1.21469 0.94619 0.88543 0.99902 1.60641 1.19334 1.00129 1.49764 1.23217 0.94666 0.89366 0.98117 0.92513 1.23029 1.01831 0.95821 0.96157 1.22937 1.00805 0.96448 0.96265 1.22103 0.96855 0.94480 0.94954 1.21777 1.00698 1.01842 0.95266 1.21468 0.91764 1.02045 1.02420 0.90995 0.91723 0.88534 0.95836 0.98640 0.92356 0.86627 0.86329 0.96234 0.93002 0.83088 0.89485 0.92841 0.90059 0.90097 0.91229 0.92919 0.92983 0.91924 0.92210 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.47 2.86 -851.14 -2.43 -28.90 16 3 C 0.26 14.32 5.16 85.63 0.44 14.76 16 4 C -0.54 -32.24 9.39 25.60 0.24 -32.00 16 5 H 0.05 3.10 7.81 -2.92 -0.02 3.07 16 6 C 0.01 0.35 5.46 84.66 0.46 0.81 16 7 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 8 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 9 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.49 20.90 7.67 87.66 0.67 21.57 16 13 O -0.60 -32.37 15.56 -3.05 -0.05 -32.41 16 14 C -0.12 -3.21 4.51 29.85 0.13 -3.07 16 15 C 0.08 2.42 4.82 86.30 0.42 2.84 16 16 N -0.67 -14.16 6.07 -488.85 -2.97 -17.12 16 17 C 0.06 1.14 3.60 45.44 0.16 1.31 16 18 H 0.06 1.34 7.82 -2.39 -0.02 1.32 16 19 C -0.13 -2.48 7.54 31.18 0.23 -2.25 16 20 C -0.13 -1.88 7.22 31.18 0.23 -1.65 16 21 C -0.08 -1.25 1.27 -51.65 -0.07 -1.31 16 22 C -0.14 -1.91 9.18 71.98 0.66 -1.25 16 23 C -0.12 -1.53 8.42 71.98 0.61 -0.92 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 26 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 27 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 28 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 29 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.12 2.81 7.40 -2.39 -0.02 2.79 16 31 H 0.12 2.47 8.11 -2.39 -0.02 2.45 16 32 H 0.02 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.35 6.07 6.96 -89.70 -0.62 5.45 16 35 H 0.09 1.69 7.64 -2.38 -0.02 1.67 16 36 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 1.16 7.99 -2.39 -0.02 1.14 16 38 H 0.08 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.76 7.98 -2.38 -0.02 0.74 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.76 6.79 -2.39 -0.02 0.74 16 43 H 0.06 0.83 7.34 -2.39 -0.02 0.81 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -74.71 352.24 2.70 -72.01 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.33 Total: 13.23 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.50 Total: 2.45 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -5.11 Total: -103.04 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.71 2.70 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581892362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.261 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds