Wall clock time and date at job start Mon Mar 30 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99756 * 2 1 4 4 C 1.50711 * 109.46703 * 269.99641 * 3 2 1 5 5 H 1.07997 * 120.00073 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99461 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00769 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99735 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47162 * 59.99751 * 8 6 4 10 10 H 1.48495 * 109.47382 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46884 * 299.99964 * 8 6 4 12 12 C 1.34771 * 120.00219 * 179.97438 * 2 1 3 13 13 O 1.21275 * 120.00201 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99756 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46807 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.46916 * 179.97438 * 15 14 12 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 14 18 18 H 1.08998 * 112.84960 * 333.30870 * 17 16 15 19 19 C 1.53779 * 113.61358 * 104.50435 * 17 16 15 20 20 C 1.53786 * 87.08243 * 139.97951 * 19 17 16 21 21 C 1.53784 * 113.61356 * 202.00339 * 17 16 15 22 22 C 1.53002 * 113.61299 * 334.56837 * 21 17 16 23 23 C 1.52995 * 113.61333 * 105.47136 * 21 17 16 24 24 H 1.08998 * 109.47814 * 270.00329 * 1 2 3 25 25 H 1.09003 * 109.47663 * 30.00784 * 1 2 3 26 26 H 1.09008 * 109.47086 * 150.00564 * 1 2 3 27 27 H 1.09002 * 109.47146 * 29.99190 * 3 2 1 28 28 H 1.08995 * 109.47212 * 149.99604 * 3 2 1 29 29 H 0.96992 * 120.00300 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47327 * 60.00443 * 14 12 2 31 31 H 1.08996 * 109.47062 * 299.99301 * 14 12 2 32 32 H 1.09004 * 109.46889 * 60.00274 * 15 14 12 33 33 H 1.08995 * 109.47384 * 299.99914 * 15 14 12 34 34 H 1.00901 * 111.00067 * 303.95263 * 16 15 14 35 35 H 1.08995 * 113.61664 * 254.52684 * 19 17 16 36 36 H 1.09004 * 113.61596 * 25.43305 * 19 17 16 37 37 H 1.09003 * 113.61233 * 89.11289 * 20 19 17 38 38 H 1.08995 * 113.61722 * 219.93635 * 20 19 17 39 39 H 1.08997 * 109.47201 * 60.00070 * 22 21 17 40 40 H 1.08996 * 109.46646 * 179.97438 * 22 21 17 41 41 H 1.09003 * 109.47125 * 299.99708 * 22 21 17 42 42 H 1.09005 * 109.47295 * 59.99850 * 23 21 17 43 43 H 1.08999 * 109.47080 * 179.97438 * 23 21 17 44 44 H 1.08998 * 109.47513 * 300.00029 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4210 5 1 2.0974 1.0960 -2.2418 6 6 3.1268 2.8774 -1.6729 7 7 3.5541 3.6176 -0.6734 8 14 3.4376 3.4169 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7029 -3.4342 11 1 4.2393 2.3817 -4.1347 12 6 2.1389 -1.1671 0.0005 13 8 3.3516 -1.1671 0.0010 14 6 1.3854 -2.4722 0.0005 15 6 2.3797 -3.6351 0.0005 16 7 1.6452 -4.9074 0.0011 17 6 2.5698 -6.0490 0.0018 18 1 3.5336 -5.8134 -0.4495 19 6 2.6831 -6.7491 1.3663 20 6 2.7043 -8.0788 0.5940 21 6 1.9422 -7.3502 -0.5255 22 6 0.4213 -7.4049 -0.3678 23 6 2.4091 -7.7296 -1.9322 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8901 -0.5138 27 1 1.6082 2.0284 0.5137 28 1 3.1498 1.1385 0.5139 29 1 4.0309 4.4435 -0.8506 30 1 0.7591 -2.5302 -0.8897 31 1 0.7585 -2.5298 0.8903 32 1 3.0063 -3.5774 0.8906 33 1 3.0063 -3.5774 -0.8894 34 1 1.0090 -4.9572 0.7827 35 1 3.6138 -6.5343 1.8913 36 1 1.8022 -6.6238 1.9959 37 1 3.7049 -8.3994 0.3040 38 1 2.1281 -8.8708 1.0724 39 1 -0.0309 -6.5796 -0.9176 40 1 0.0491 -8.3506 -0.7616 41 1 0.1624 -7.3234 0.6879 42 1 3.4905 -7.8670 -1.9314 43 1 1.9256 -8.6575 -2.2376 44 1 2.1444 -6.9349 -2.6297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581892363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:13 Heat of formation + Delta-G solvation = -28.668901 kcal Electronic energy + Delta-G solvation = -20664.903026 eV Core-core repulsion = 17617.363353 eV Total energy + Delta-G solvation = -3047.539673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09959 -38.92867 -35.14551 -34.57062 -32.59878 -30.86920 -29.90078 -27.67490 -27.50810 -25.77160 -24.44997 -23.02717 -22.57229 -21.62102 -18.69559 -18.06034 -16.55423 -16.38807 -15.82309 -15.41589 -15.29006 -14.92712 -14.50405 -14.16262 -14.10918 -13.39896 -13.34139 -12.87382 -12.49169 -12.38175 -12.26691 -12.15443 -12.05378 -11.83987 -11.73541 -11.61978 -11.49301 -11.15330 -10.98016 -10.84079 -10.79591 -10.53813 -10.29885 -10.15372 -10.13285 -9.62146 -8.85778 -8.41584 -8.33495 -7.61021 -6.02432 -4.07292 3.33380 3.37485 3.39765 3.49498 3.82949 4.27459 4.34018 4.46386 4.50013 4.59416 4.79200 5.11016 5.18743 5.24565 5.31818 5.32509 5.43312 5.46922 5.50567 5.59403 5.61451 5.65665 5.71592 5.77348 5.83380 5.85211 5.94967 5.95982 6.04817 6.15590 6.18008 6.24789 6.27485 6.37196 7.04733 7.08365 7.37073 7.46598 7.57204 7.94094 8.25712 8.45727 8.92365 9.13413 9.57832 11.05651 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.003355 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.898102 B = 8342.879145 C = 8611.154938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.136 4.136 15 C 0.075 3.925 16 N -0.678 5.678 17 C 0.077 3.923 18 H 0.097 0.903 19 C -0.171 4.171 20 C -0.134 4.134 21 C -0.076 4.076 22 C -0.121 4.121 23 C -0.135 4.135 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.338 0.662 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 -21.200 2.913 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.177 4.177 15 C -0.054 4.054 16 N -0.307 5.307 17 C -0.034 4.034 18 H 0.115 0.885 19 C -0.210 4.210 20 C -0.172 4.172 21 C -0.077 4.077 22 C -0.178 4.178 23 C -0.192 4.192 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.768 -20.967 2.269 22.149 hybrid contribution 0.429 0.493 -0.016 0.654 sum -6.339 -20.474 2.253 21.551 Atomic orbital electron populations 1.21634 0.81455 1.02636 1.00308 1.48161 1.06183 1.07895 1.71359 1.19272 0.92532 0.78191 0.97446 1.21415 1.36505 1.06286 0.92335 0.92507 1.24942 0.95356 0.96386 0.97460 1.69922 1.38407 1.14373 1.30810 0.86551 0.78369 0.77804 0.84661 1.20232 1.21175 1.20158 1.20303 0.88073 0.85185 0.77405 1.90662 1.14028 1.87367 1.50319 1.21613 0.99308 0.92978 1.03801 1.21685 0.94863 0.86860 1.01991 1.60391 1.19496 1.01432 1.49355 1.23124 0.95749 0.89418 0.95089 0.88478 1.23618 1.02086 0.97690 0.97641 1.22933 1.00516 0.96399 0.97359 1.21990 0.95917 0.95232 0.94592 1.21448 0.93240 1.01719 1.01409 1.21710 1.00475 1.01104 0.95911 0.93875 0.90869 0.92284 0.95087 0.93917 0.92673 0.88743 0.90027 0.94465 0.90220 0.84334 0.91620 0.90108 0.90276 0.91490 0.91015 0.93220 0.93114 0.92912 0.92956 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.60 -13.02 2.86 -182.95 -0.52 -13.55 16 3 C 0.24 6.54 5.16 -5.19 -0.03 6.52 16 4 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.50 10.57 7.67 -10.99 -0.08 10.49 16 13 O -0.55 -13.90 15.56 5.56 0.09 -13.82 16 14 C -0.14 -2.01 4.51 -27.88 -0.13 -2.13 16 15 C 0.08 1.06 4.84 -3.82 -0.02 1.05 16 16 N -0.68 -7.54 5.58 -105.86 -0.59 -8.13 16 17 C 0.08 0.79 3.60 -66.90 -0.24 0.55 16 18 H 0.10 1.11 7.85 -51.93 -0.41 0.70 16 19 C -0.17 -1.53 7.36 -25.92 -0.19 -1.72 16 20 C -0.13 -1.09 7.19 -25.91 -0.19 -1.28 16 21 C -0.08 -0.68 1.37 -153.69 -0.21 -0.89 16 22 C -0.12 -1.01 8.37 37.16 0.31 -0.70 16 23 C -0.13 -1.19 9.19 37.16 0.34 -0.85 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.06 0.77 6.44 -51.92 -0.33 0.44 16 27 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 31 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.04 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 34 H 0.34 3.31 8.05 -39.29 -0.32 2.99 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.68 7.34 -51.93 -0.38 0.29 16 37 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 38 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.07 0.67 7.77 -51.93 -0.40 0.26 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.39 7.34 -51.93 -0.38 0.01 16 42 H 0.05 0.44 7.94 -51.93 -0.41 0.03 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -32.66 353.39 -8.22 -40.88 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.00 Total: -0.66 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.24 Total: -0.90 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.38 Total: -47.96 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.66 -8.22 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581892363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.216 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds