Wall clock time and date at job start Mon Mar 30 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47354 * 240.00043 * 3 2 1 5 5 H 1.48510 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47476 * 119.99201 * 3 2 1 7 7 C 1.37887 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00186 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00106 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47407 * 34.99725 * 11 10 9 13 13 C 1.53000 * 109.46769 * 274.99427 * 11 10 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47317 * 59.99960 * 14 13 11 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 19 19 N 1.46899 * 109.47254 * 180.02562 * 17 16 15 20 20 C 1.47010 * 110.99763 * 58.63817 * 19 17 16 21 21 C 1.53095 * 109.25669 * 177.60920 * 20 19 17 22 22 O 1.43017 * 109.25977 * 56.84723 * 21 20 19 23 23 C 1.43011 * 113.73679 * 301.32824 * 22 21 20 24 24 C 1.47006 * 110.99890 * 295.00235 * 19 17 16 25 25 H 0.96996 * 119.99815 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47457 * 59.99001 * 9 7 2 27 27 H 1.09003 * 109.46809 * 299.99760 * 9 7 2 28 28 H 1.00904 * 110.99568 * 303.95043 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00295 * 13 11 10 30 30 H 1.09001 * 109.47194 * 60.00475 * 13 11 10 31 31 H 1.08996 * 109.47853 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47153 * 300.00319 * 14 13 11 33 33 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 35 35 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 36 36 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 37 37 H 1.09008 * 109.50302 * 297.53893 * 20 19 17 38 38 H 1.08995 * 109.51271 * 57.66896 * 20 19 17 39 39 H 1.08997 * 109.50923 * 296.90742 * 21 20 19 40 40 H 1.09007 * 109.50816 * 176.77866 * 21 20 19 41 41 H 1.09005 * 109.50787 * 298.73893 * 23 22 21 42 42 H 1.08996 * 109.54387 * 178.63131 * 23 22 21 43 43 H 1.09007 * 109.50892 * 302.32455 * 24 19 17 44 44 H 1.09002 * 109.51452 * 62.41170 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5918 -4.8254 -0.5879 13 6 1.1522 -5.2950 1.4384 14 6 0.4233 -6.6403 1.4392 15 6 1.3295 -7.7117 0.8297 16 6 1.6827 -7.3237 -0.6076 17 6 2.4115 -5.9785 -0.6084 18 1 3.3249 -6.0599 -0.0191 19 7 2.7500 -5.6058 -1.9884 20 6 1.5421 -5.5180 -2.8217 21 6 1.9334 -5.0701 -4.2324 22 8 2.8951 -5.9834 -4.7675 23 6 4.0846 -6.0930 -3.9812 24 6 3.7151 -6.5513 -2.5678 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8403 -3.5487 -0.7809 29 1 2.0656 -5.3768 2.0275 30 1 0.5068 -4.5315 1.8728 31 1 0.1714 -6.9165 2.4630 32 1 -0.4901 -6.5589 0.8500 33 1 0.8101 -8.6700 0.8298 34 1 2.2430 -7.7931 1.4189 35 1 0.7693 -7.2424 -1.1968 36 1 2.3287 -8.0869 -1.0416 37 1 1.0616 -6.4952 -2.8702 38 1 0.8525 -4.7938 -2.3880 39 1 2.3651 -4.0702 -4.1903 40 1 1.0487 -5.0587 -4.8692 41 1 4.5789 -5.1228 -3.9316 42 1 4.7565 -6.8209 -4.4358 43 1 4.6119 -6.5813 -1.9489 44 1 3.2697 -7.5452 -2.6116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582048775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:48 Heat of formation + Delta-G solvation = -50.871904 kcal Electronic energy + Delta-G solvation = -22132.510770 eV Core-core repulsion = 19084.008303 eV Total energy + Delta-G solvation = -3048.502467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18907 -38.12462 -34.89824 -34.41243 -32.28322 -31.12787 -29.81889 -28.95123 -26.32430 -25.34949 -24.07455 -22.71909 -21.61820 -20.79514 -20.22158 -18.97414 -16.76220 -16.35256 -15.98605 -15.14104 -15.05329 -14.93453 -14.71559 -14.35321 -14.20478 -14.03090 -13.72714 -13.25406 -12.74418 -12.38633 -12.23461 -12.08972 -11.83344 -11.53176 -11.43949 -11.29510 -10.92695 -10.87084 -10.76678 -10.65641 -10.58834 -10.38307 -10.22526 -9.94993 -9.74067 -9.44082 -9.09937 -8.42094 -8.15651 -7.13164 -5.97939 -3.98811 3.36754 3.40200 3.43725 3.79269 3.94788 4.46990 4.73292 4.84494 4.94055 5.03580 5.08408 5.13926 5.20091 5.30396 5.37903 5.39642 5.41538 5.56809 5.59775 5.66399 5.69386 5.74977 5.77552 5.82252 5.88481 5.96620 6.00516 6.13648 6.26552 6.27712 6.33077 6.39704 6.67279 6.76433 7.07242 7.14198 7.19116 7.36755 7.52876 7.86736 8.22311 8.57943 8.78342 9.11850 9.65811 11.13210 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.006170 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.477395 B = 4537.170502 C = 5803.313747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.198 3.802 10 N -0.683 5.683 11 C 0.099 3.901 12 H 0.032 0.968 13 C -0.106 4.106 14 C -0.120 4.120 15 C -0.111 4.111 16 C -0.150 4.150 17 C 0.086 3.914 18 H 0.088 0.912 19 N -0.525 5.525 20 C 0.013 3.987 21 C 0.063 3.937 22 O -0.390 6.390 23 C 0.063 3.937 24 C 0.018 3.982 25 H 0.261 0.739 26 H -0.019 1.019 27 H 0.024 0.976 28 H 0.342 0.658 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -16.084 -4.011 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.071 3.929 10 N -0.315 5.315 11 C -0.012 4.012 12 H 0.050 0.950 13 C -0.145 4.145 14 C -0.158 4.158 15 C -0.149 4.149 16 C -0.189 4.189 17 C -0.023 4.023 18 H 0.106 0.894 19 N -0.249 5.249 20 C -0.115 4.115 21 C -0.014 4.014 22 O -0.309 6.309 23 C -0.014 4.014 24 C -0.110 4.110 25 H 0.070 0.930 26 H -0.001 1.001 27 H 0.042 0.958 28 H 0.161 0.839 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.047 -15.552 -3.512 16.450 hybrid contribution -0.373 0.271 -0.593 0.751 sum 3.675 -15.281 -4.105 16.244 Atomic orbital electron populations 1.69951 1.06046 1.26723 1.51227 1.24973 0.94837 0.99236 0.95511 0.86581 0.79444 0.82855 0.78620 1.20315 1.21430 1.20221 1.21168 0.93455 0.90338 1.49876 0.92133 1.19517 0.90594 0.87534 0.95219 1.60649 1.20808 1.00286 1.49796 1.21406 0.94618 0.90505 0.94684 0.94975 1.21525 1.00404 0.95469 0.97095 1.21570 0.98475 0.95496 1.00284 1.21443 0.99820 0.98101 0.95584 1.22200 1.00827 0.98188 0.97709 1.21959 0.98999 0.92935 0.88380 0.89364 1.62331 1.12284 1.48243 1.02048 1.22860 0.93190 1.01149 0.94322 1.22685 0.92312 0.93140 0.93219 1.87936 1.28533 1.64637 1.49750 1.22643 0.87261 1.01514 0.89947 1.22760 0.97166 0.94457 0.96625 0.92991 1.00079 0.95804 0.83859 0.91666 0.91465 0.92197 0.92438 0.92577 0.91994 0.91883 0.92283 0.93957 0.89061 0.91805 0.88704 0.92111 0.88925 0.89792 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.60 9.32 -34.44 -0.32 -14.93 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.22 5.24 -4.98 -0.03 5.19 16 10 N -0.68 -14.71 6.30 -108.00 -0.68 -15.39 16 11 C 0.10 1.73 1.67 -67.71 -0.11 1.62 16 12 H 0.03 0.61 6.04 -51.93 -0.31 0.30 16 13 C -0.11 -1.73 5.43 -26.73 -0.15 -1.87 16 14 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 15 C -0.11 -1.27 5.92 -26.73 -0.16 -1.42 16 16 C -0.15 -1.82 4.50 -26.73 -0.12 -1.94 16 17 C 0.09 1.22 1.79 -67.71 -0.12 1.10 16 18 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 19 N -0.53 -7.43 3.78 -226.33 -0.85 -8.29 16 20 C 0.01 0.18 4.86 -3.71 -0.02 0.16 16 21 C 0.06 0.86 7.01 37.21 0.26 1.12 16 22 O -0.39 -5.36 10.83 -35.23 -0.38 -5.75 16 23 C 0.06 0.74 7.01 37.21 0.26 1.00 16 24 C 0.02 0.21 5.31 -3.71 -0.02 0.19 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H -0.02 -0.52 8.06 -51.93 -0.42 -0.94 16 27 H 0.02 0.68 7.44 -51.93 -0.39 0.29 16 28 H 0.34 7.38 7.55 -39.29 -0.30 7.09 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.24 7.45 -51.93 -0.39 0.85 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 36 H 0.06 0.66 6.58 -51.93 -0.34 0.32 16 37 H 0.04 0.57 6.42 -51.92 -0.33 0.24 16 38 H 0.09 1.48 6.22 -51.93 -0.32 1.16 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 44 H 0.04 0.48 6.56 -51.93 -0.34 0.14 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -30.03 328.87 -9.69 -39.72 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.67 Total: 4.13 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.78 Total: -9.99 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.80 Total: -50.03 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.03 -9.69 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582048775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.151 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds