Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00475 * 2 1 4 4 H 1.48501 * 109.47354 * 240.00043 * 3 2 1 5 5 H 1.48510 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47476 * 119.99201 * 3 2 1 7 7 C 1.37887 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00186 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00106 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47407 * 34.99725 * 11 10 9 13 13 C 1.53000 * 109.46769 * 274.99427 * 11 10 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47317 * 59.99960 * 14 13 11 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 19 19 N 1.46899 * 109.47254 * 180.02562 * 17 16 15 20 20 C 1.47010 * 110.99763 * 58.63817 * 19 17 16 21 21 C 1.53095 * 109.25669 * 177.60920 * 20 19 17 22 22 O 1.43017 * 109.25977 * 56.84723 * 21 20 19 23 23 C 1.43011 * 113.73679 * 301.32824 * 22 21 20 24 24 C 1.47006 * 110.99890 * 295.00235 * 19 17 16 25 25 H 0.96996 * 119.99815 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47457 * 59.99001 * 9 7 2 27 27 H 1.09003 * 109.46809 * 299.99760 * 9 7 2 28 28 H 1.00904 * 110.99568 * 303.95043 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00295 * 13 11 10 30 30 H 1.09001 * 109.47194 * 60.00475 * 13 11 10 31 31 H 1.08996 * 109.47853 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47153 * 300.00319 * 14 13 11 33 33 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 35 35 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 36 36 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 37 37 H 1.09008 * 109.50302 * 297.53893 * 20 19 17 38 38 H 1.08995 * 109.51271 * 57.66896 * 20 19 17 39 39 H 1.08997 * 109.50923 * 296.90742 * 21 20 19 40 40 H 1.09007 * 109.50816 * 176.77866 * 21 20 19 41 41 H 1.09005 * 109.50787 * 298.73893 * 23 22 21 42 42 H 1.08996 * 109.54387 * 178.63131 * 23 22 21 43 43 H 1.09007 * 109.50892 * 302.32455 * 24 19 17 44 44 H 1.09002 * 109.51452 * 62.41170 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5918 -4.8254 -0.5879 13 6 1.1522 -5.2950 1.4384 14 6 0.4233 -6.6403 1.4392 15 6 1.3295 -7.7117 0.8297 16 6 1.6827 -7.3237 -0.6076 17 6 2.4115 -5.9785 -0.6084 18 1 3.3249 -6.0599 -0.0191 19 7 2.7500 -5.6058 -1.9884 20 6 1.5421 -5.5180 -2.8217 21 6 1.9334 -5.0701 -4.2324 22 8 2.8951 -5.9834 -4.7675 23 6 4.0846 -6.0930 -3.9812 24 6 3.7151 -6.5513 -2.5678 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8403 -3.5487 -0.7809 29 1 2.0656 -5.3768 2.0275 30 1 0.5068 -4.5315 1.8728 31 1 0.1714 -6.9165 2.4630 32 1 -0.4901 -6.5589 0.8500 33 1 0.8101 -8.6700 0.8298 34 1 2.2430 -7.7931 1.4189 35 1 0.7693 -7.2424 -1.1968 36 1 2.3287 -8.0869 -1.0416 37 1 1.0616 -6.4952 -2.8702 38 1 0.8525 -4.7938 -2.3880 39 1 2.3651 -4.0702 -4.1903 40 1 1.0487 -5.0587 -4.8692 41 1 4.5789 -5.1228 -3.9316 42 1 4.7565 -6.8209 -4.4358 43 1 4.6119 -6.5813 -1.9489 44 1 3.2697 -7.5452 -2.6116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582048775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -72.139556 kcal Electronic energy + Delta-G solvation = -22133.433005 eV Core-core repulsion = 19084.008303 eV Total energy + Delta-G solvation = -3049.424702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33039 -39.27843 -36.33984 -35.85625 -34.30575 -32.16402 -30.95659 -30.51996 -27.92606 -26.78767 -25.13041 -24.30626 -23.03653 -22.17127 -21.42288 -20.16748 -18.58424 -17.69064 -17.14006 -16.69401 -16.51593 -16.06772 -16.00342 -15.62675 -15.45744 -15.27935 -15.09896 -14.61353 -14.25031 -13.87743 -13.72840 -13.50140 -13.20036 -12.87455 -12.78397 -12.62141 -12.54146 -12.50436 -12.08591 -12.00293 -11.90356 -11.78594 -11.48635 -11.42028 -11.16266 -10.98499 -10.64800 -10.60801 -9.24343 -8.98974 -8.21183 -6.31894 1.39959 1.43765 1.51643 2.40327 2.72639 2.94279 3.11738 3.46778 3.70151 3.92210 3.95144 4.04605 4.06409 4.16758 4.20257 4.26184 4.32240 4.40198 4.48378 4.51262 4.58694 4.62841 4.71285 4.78636 4.82324 4.89269 4.95079 5.01753 5.08034 5.16479 5.17987 5.20585 5.26172 5.34549 5.36469 5.50145 5.65543 5.97497 6.06122 6.07698 6.16121 6.56803 6.80808 7.00069 7.39199 8.90206 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.006170 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.477395 B = 4537.170502 C = 5803.313747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.219 3.781 10 N -0.679 5.679 11 C 0.098 3.902 12 H 0.012 0.988 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.106 4.106 16 C -0.142 4.142 17 C 0.096 3.904 18 H 0.091 0.909 19 N -0.544 5.544 20 C 0.020 3.980 21 C 0.067 3.933 22 O -0.398 6.398 23 C 0.059 3.941 24 C 0.021 3.979 25 H 0.264 0.736 26 H -0.049 1.049 27 H -0.006 1.006 28 H 0.342 0.658 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -17.614 -4.196 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.091 3.909 10 N -0.311 5.311 11 C -0.013 4.013 12 H 0.030 0.970 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.181 4.181 17 C -0.013 4.013 18 H 0.109 0.891 19 N -0.268 5.268 20 C -0.108 4.108 21 C -0.010 4.010 22 O -0.317 6.317 23 C -0.017 4.017 24 C -0.106 4.106 25 H 0.073 0.927 26 H -0.031 1.031 27 H 0.012 0.988 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.140 0.860 43 H 0.117 0.883 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.665 -17.110 -3.697 18.399 hybrid contribution -0.883 0.726 -0.533 1.261 sum 4.782 -16.384 -4.229 17.584 Atomic orbital electron populations 1.70088 1.07790 1.27930 1.51685 1.25933 0.95755 1.03276 0.94644 0.85418 0.78154 0.77774 0.79142 1.19175 1.20726 1.19313 1.21518 0.93658 0.91587 1.50368 0.92065 1.19091 0.90470 0.89070 0.92285 1.60564 1.19995 1.00895 1.49633 1.21512 0.94379 0.89694 0.95699 0.97001 1.21488 1.00226 0.96726 0.95825 1.21527 0.98185 0.93931 1.01562 1.21431 1.00021 0.98185 0.94735 1.22134 1.00521 0.96979 0.98498 1.21796 0.98358 0.92752 0.88375 0.89129 1.62277 1.12657 1.49828 1.02049 1.22714 0.92937 1.00694 0.94459 1.22636 0.92899 0.92316 0.93174 1.87927 1.29111 1.64352 1.50318 1.22848 0.86826 1.02040 0.90014 1.22826 0.96949 0.94147 0.96710 0.92704 1.03130 0.98809 0.83890 0.91425 0.94844 0.90510 0.93052 0.90208 0.90965 0.92636 0.90221 0.92960 0.92116 0.93546 0.87315 0.92956 0.85978 0.88346 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.53 -31.45 9.32 25.60 0.24 -31.21 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.22 12.19 5.24 85.56 0.45 12.64 16 10 N -0.68 -30.47 6.30 -495.59 -3.12 -33.59 16 11 C 0.10 3.53 1.67 44.92 0.07 3.60 16 12 H 0.01 0.49 6.04 -2.39 -0.01 0.47 16 13 C -0.10 -3.45 5.43 30.59 0.17 -3.29 16 14 C -0.11 -2.82 5.92 30.59 0.18 -2.64 16 15 C -0.11 -2.09 5.92 30.60 0.18 -1.91 16 16 C -0.14 -3.10 4.50 30.60 0.14 -2.96 16 17 C 0.10 2.64 1.79 44.92 0.08 2.72 16 18 H 0.09 2.50 8.12 -2.39 -0.02 2.48 16 19 N -0.54 -15.01 3.78 -869.99 -3.29 -18.30 16 20 C 0.02 0.58 4.86 86.31 0.42 1.00 16 21 C 0.07 1.81 7.01 72.01 0.50 2.31 16 22 O -0.40 -10.39 10.83 -148.98 -1.61 -12.01 16 23 C 0.06 1.25 7.01 72.02 0.50 1.76 16 24 C 0.02 0.45 5.31 86.32 0.46 0.91 16 25 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 26 H -0.05 -2.96 8.06 -2.39 -0.02 -2.98 16 27 H -0.01 -0.38 7.44 -2.39 -0.02 -0.39 16 28 H 0.34 15.23 7.55 -89.69 -0.68 14.55 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.03 1.30 7.45 -2.39 -0.02 1.29 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.32 6.43 -2.39 -0.02 1.30 16 36 H 0.08 1.48 6.58 -2.39 -0.02 1.46 16 37 H 0.05 1.37 6.42 -2.38 -0.02 1.36 16 38 H 0.06 2.10 6.22 -2.39 -0.01 2.08 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 1.82 8.13 -2.38 -0.02 1.80 16 44 H 0.05 1.01 6.56 -2.39 -0.02 1.00 16 Total: -1.00 -66.59 328.87 -1.56 -68.15 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.29 Total: 22.39 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.86 Total: -16.50 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -6.12 Total: -109.43 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.61 Total: -12.01 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -66.59 -1.56 -68.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582048775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.989 kcal (2) G-P(sol) polarization free energy of solvation -66.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds