Wall clock time and date at job start Mon Mar 30 2020 01:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99699 * 2 1 4 4 H 1.48503 * 109.47060 * 269.99592 * 3 2 1 5 5 H 1.48500 * 109.47340 * 29.99787 * 3 2 1 6 6 H 1.48504 * 109.47080 * 149.99745 * 3 2 1 7 7 C 1.37875 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99638 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99825 * 180.02562 * 7 2 1 10 10 N 1.46908 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99574 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47290 * 324.99922 * 11 10 9 13 13 C 1.53002 * 109.47068 * 85.00153 * 11 10 9 14 14 C 1.53004 * 109.47032 * 59.99495 * 13 11 10 15 15 C 1.53004 * 109.46895 * 60.00373 * 14 13 11 16 16 C 1.53002 * 109.46976 * 299.99661 * 15 14 13 17 17 C 1.52995 * 109.46605 * 204.99798 * 11 10 9 18 18 H 1.09002 * 109.46679 * 180.02562 * 17 11 10 19 19 N 1.46899 * 109.47237 * 60.00774 * 17 11 10 20 20 C 1.47010 * 111.00115 * 183.01497 * 19 17 11 21 21 C 1.53104 * 109.25807 * 177.60296 * 20 19 17 22 22 O 1.43009 * 109.25759 * 56.85080 * 21 20 19 23 23 C 1.43019 * 113.73644 * 301.33070 * 22 21 20 24 24 C 1.47015 * 111.00212 * 59.37608 * 19 17 11 25 25 H 0.97001 * 120.00094 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47426 * 60.00174 * 9 7 2 27 27 H 1.08991 * 109.47278 * 299.99451 * 9 7 2 28 28 H 1.00895 * 110.99899 * 303.95301 * 10 9 7 29 29 H 1.08998 * 109.47544 * 179.97438 * 13 11 10 30 30 H 1.09004 * 109.47207 * 300.00252 * 13 11 10 31 31 H 1.08998 * 109.46909 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.47442 * 300.00185 * 14 13 11 33 33 H 1.09002 * 109.47229 * 59.99682 * 15 14 13 34 34 H 1.09000 * 109.47064 * 180.02562 * 15 14 13 35 35 H 1.08993 * 109.46988 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47159 * 300.00064 * 16 15 14 37 37 H 1.09002 * 109.50844 * 297.53708 * 20 19 17 38 38 H 1.09002 * 109.50678 * 57.67227 * 20 19 17 39 39 H 1.08999 * 109.50592 * 296.90963 * 21 20 19 40 40 H 1.08998 * 109.50376 * 176.78615 * 21 20 19 41 41 H 1.09004 * 109.50547 * 298.73227 * 23 22 21 42 42 H 1.09001 * 109.50539 * 178.60740 * 23 22 21 43 43 H 1.08992 * 109.50876 * 302.33097 * 24 19 17 44 44 H 1.09005 * 109.50344 * 62.42117 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0012 -2.5790 0.0022 11 6 5.4698 -2.6181 0.0022 12 1 5.8554 -1.7868 -0.5879 13 6 5.9830 -2.5048 1.4391 14 6 5.4416 -3.6718 2.2675 15 6 5.9166 -4.9928 1.6589 16 6 5.4034 -5.1060 0.2220 17 6 5.9446 -3.9391 -0.6063 18 1 7.0343 -3.9683 -0.6059 19 7 5.4520 -4.0478 -1.9859 20 6 5.8292 -5.3386 -2.5799 21 6 5.2463 -5.4340 -3.9924 22 8 5.7076 -4.3253 -4.7690 23 6 5.3572 -3.0522 -4.2196 24 6 5.9412 -2.9325 -2.8095 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6255 -3.0947 0.7838 29 1 7.0726 -2.5343 1.4393 30 1 5.6445 -1.5638 1.8728 31 1 5.8076 -3.5913 3.2910 32 1 4.3520 -3.6427 2.2675 33 1 7.0063 -5.0218 1.6589 34 1 5.5306 -5.8241 2.2488 35 1 5.7414 -6.0472 -0.2114 36 1 4.3138 -5.0770 0.2220 37 1 6.9155 -5.4133 -2.6287 38 1 5.4349 -6.1499 -1.9679 39 1 4.1578 -5.4134 -3.9391 40 1 5.5708 -6.3647 -4.4579 41 1 4.2719 -2.9622 -4.1730 42 1 5.7620 -2.2601 -4.8496 43 1 5.6288 -1.9876 -2.3652 44 1 7.0294 -2.9684 -2.8613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582048777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:53 Heat of formation + Delta-G solvation = -41.131062 kcal Electronic energy + Delta-G solvation = -22285.199943 eV Core-core repulsion = 19237.119870 eV Total energy + Delta-G solvation = -3048.080073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99998 -38.34906 -35.03935 -34.06885 -32.22506 -31.06662 -29.89428 -29.33863 -26.55978 -25.50333 -24.17882 -21.95235 -21.68224 -21.18818 -20.13066 -18.63088 -16.94735 -16.54154 -15.88801 -15.45714 -14.98705 -14.80364 -14.76370 -14.39395 -13.99274 -13.95553 -13.71919 -13.08844 -12.79610 -12.49752 -12.42844 -12.26040 -11.84136 -11.66765 -11.61088 -11.21557 -11.17297 -11.07421 -10.73029 -10.50204 -10.42279 -10.22794 -10.21636 -9.79875 -9.62943 -9.47014 -9.22190 -8.55569 -7.98321 -7.25013 -6.02433 -3.99170 3.29271 3.36658 3.38271 3.88252 4.04141 4.44071 4.76487 4.91883 5.04737 5.07591 5.16431 5.23598 5.27786 5.30211 5.31036 5.37577 5.46115 5.51693 5.62445 5.63724 5.68888 5.74659 5.80652 5.86083 5.94359 5.94821 6.02320 6.13977 6.15392 6.25687 6.34493 6.38351 6.45169 6.63596 6.83773 7.09621 7.21269 7.33002 7.34169 7.67829 8.00324 8.46563 8.72076 9.07473 9.60365 11.11087 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015268 B = 0.006877 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.466100 B = 4070.509536 C = 5205.000347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.166 3.834 10 N -0.653 5.653 11 C 0.090 3.910 12 H 0.069 0.931 13 C -0.150 4.150 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.114 4.114 17 C 0.104 3.896 18 H 0.029 0.971 19 N -0.505 5.505 20 C 0.015 3.985 21 C 0.065 3.935 22 O -0.393 6.393 23 C 0.064 3.936 24 C 0.023 3.977 25 H 0.262 0.738 26 H -0.021 1.021 27 H 0.017 0.983 28 H 0.334 0.666 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.758 -9.701 -1.572 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.097 0.903 9 C 0.038 3.962 10 N -0.284 5.284 11 C -0.022 4.022 12 H 0.087 0.913 13 C -0.190 4.190 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.004 4.004 18 H 0.047 0.953 19 N -0.229 5.229 20 C -0.113 4.113 21 C -0.012 4.012 22 O -0.311 6.311 23 C -0.012 4.012 24 C -0.106 4.106 25 H 0.072 0.928 26 H -0.003 1.003 27 H 0.035 0.965 28 H 0.154 0.846 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.114 -9.637 -2.429 17.262 hybrid contribution 1.370 1.334 1.203 2.259 sum 15.484 -8.303 -1.226 17.612 Atomic orbital electron populations 1.69904 1.06131 1.26711 1.51374 1.24899 0.94693 0.98804 0.94953 0.86860 0.80237 0.84109 0.78486 1.20258 1.21353 1.19379 1.21060 0.89058 0.94651 1.49958 0.90344 1.19984 0.96487 0.85535 0.94172 1.60511 1.02895 1.15779 1.49260 1.21557 0.91553 0.95661 0.93400 0.91335 1.22219 1.00249 0.98868 0.97640 1.21533 1.01591 0.94359 0.98397 1.21502 1.00106 0.97494 0.96150 1.21607 1.02938 0.96632 0.93966 1.21573 0.94837 0.96275 0.87740 0.95279 1.62033 1.59207 1.00635 1.01055 1.22831 0.98010 0.93859 0.96583 1.22625 0.99203 0.89323 0.90074 1.87915 1.78874 1.14587 1.49757 1.22666 1.00607 0.85049 0.92928 1.22740 0.96711 0.96580 0.94520 0.92771 1.00311 0.96476 0.84569 0.92532 0.91646 0.92353 0.91111 0.92711 0.92021 0.92613 0.89682 0.95073 0.89549 0.91997 0.89173 0.91489 0.88993 0.88984 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.45 9.87 -34.44 -0.34 -14.79 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.17 3.95 4.31 -4.97 -0.02 3.93 16 10 N -0.65 -12.96 5.59 -107.99 -0.60 -13.57 16 11 C 0.09 1.45 1.94 -67.71 -0.13 1.32 16 12 H 0.07 1.17 6.00 -51.93 -0.31 0.85 16 13 C -0.15 -2.15 5.52 -26.73 -0.15 -2.30 16 14 C -0.12 -1.57 5.67 -26.73 -0.15 -1.73 16 15 C -0.11 -1.32 5.92 -26.73 -0.16 -1.47 16 16 C -0.11 -1.46 4.64 -26.73 -0.12 -1.58 16 17 C 0.10 1.48 1.71 -67.72 -0.12 1.36 16 18 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 19 N -0.50 -7.51 4.43 -226.34 -1.00 -8.51 16 20 C 0.02 0.20 5.27 -3.71 -0.02 0.18 16 21 C 0.06 0.81 7.01 37.21 0.26 1.07 16 22 O -0.39 -5.70 10.83 -35.23 -0.38 -6.09 16 23 C 0.06 0.91 7.01 37.21 0.26 1.17 16 24 C 0.02 0.33 5.32 -3.71 -0.02 0.31 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H -0.02 -0.50 6.49 -51.93 -0.34 -0.84 16 27 H 0.02 0.42 7.48 -51.93 -0.39 0.03 16 28 H 0.33 6.59 5.56 -39.29 -0.22 6.38 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.04 7.45 -51.93 -0.39 0.65 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.03 6.26 -51.93 -0.32 0.71 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.64 6.31 -51.93 -0.33 0.31 16 36 H 0.08 1.27 7.21 -51.93 -0.37 0.90 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 1.00 6.12 -51.93 -0.32 0.68 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.47 6.17 -51.93 -0.32 1.15 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -30.52 323.65 -9.36 -39.88 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.55 Total: 4.12 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.80 Total: -10.66 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.83 Total: -49.10 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.38 Total: -6.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.52 -9.36 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582048777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.255 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds