Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48507 * 109.47119 * 89.99974 * 3 2 1 5 5 H 1.48493 * 109.47304 * 210.00213 * 3 2 1 6 6 H 1.48499 * 109.46843 * 330.00199 * 3 2 1 7 7 C 1.37883 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00024 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99923 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47247 * 324.99449 * 11 10 9 13 13 C 1.53002 * 109.47322 * 85.00048 * 11 10 9 14 14 C 1.52993 * 109.46933 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47105 * 299.99508 * 14 13 11 16 16 C 1.53001 * 109.47195 * 60.00418 * 15 14 13 17 17 C 1.52998 * 109.46733 * 300.00144 * 16 15 14 18 18 H 1.08999 * 109.47623 * 299.99337 * 17 16 15 19 19 N 1.46906 * 109.46799 * 179.97438 * 17 16 15 20 20 C 1.47006 * 111.00042 * 71.74903 * 19 17 16 21 21 C 1.53101 * 109.25878 * 177.60788 * 20 19 17 22 22 O 1.43013 * 109.25787 * 56.84941 * 21 20 19 23 23 C 1.43016 * 113.73683 * 301.32900 * 22 21 20 24 24 C 1.47012 * 110.99797 * 308.11051 * 19 17 16 25 25 H 0.96994 * 120.00189 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46670 * 299.99676 * 9 7 2 27 27 H 1.08994 * 109.47201 * 59.99584 * 9 7 2 28 28 H 1.00896 * 110.99558 * 303.95304 * 10 9 7 29 29 H 1.09002 * 109.46754 * 299.99518 * 13 11 10 30 30 H 1.08999 * 109.46717 * 59.99412 * 13 11 10 31 31 H 1.09007 * 109.46911 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47535 * 59.99989 * 14 13 11 33 33 H 1.08997 * 109.46985 * 300.00293 * 15 14 13 34 34 H 1.08997 * 109.46940 * 180.02562 * 15 14 13 35 35 H 1.08993 * 109.47357 * 180.02562 * 16 15 14 36 36 H 1.08997 * 109.46794 * 59.99423 * 16 15 14 37 37 H 1.08998 * 109.50968 * 297.54228 * 20 19 17 38 38 H 1.09008 * 109.50864 * 57.67403 * 20 19 17 39 39 H 1.09001 * 109.50419 * 296.90800 * 21 20 19 40 40 H 1.09003 * 109.50368 * 176.78852 * 21 20 19 41 41 H 1.09004 * 109.50784 * 298.73731 * 23 22 21 42 42 H 1.09002 * 109.50592 * 178.60561 * 23 22 21 43 43 H 1.08989 * 109.51027 * 302.32738 * 24 19 17 44 44 H 1.08998 * 109.50575 * 62.42080 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6526 -0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0013 -2.5790 -0.0013 11 6 5.4697 -2.6182 -0.0014 12 1 5.8553 -1.7858 -0.5901 13 6 5.9830 -2.5075 1.4357 14 6 7.5124 -2.5489 1.4356 15 6 7.9868 -3.8691 0.8249 16 6 7.4735 -3.9799 -0.6122 17 6 5.9441 -3.9384 -0.6121 18 1 5.5581 -4.7705 -0.0233 19 7 5.4514 -4.0442 -1.9920 20 6 5.6442 -5.4034 -2.5175 21 6 5.0644 -5.4849 -3.9322 22 8 5.6857 -4.4933 -4.7544 23 6 5.5171 -3.1575 -4.2722 24 6 6.1015 -3.0525 -2.8610 25 1 -0.4850 0.8400 0.0004 26 1 3.8751 -0.6797 -0.8896 27 1 3.8745 -0.6808 0.8904 28 1 3.6255 -3.0961 0.7793 29 1 5.6447 -1.5671 1.8709 30 1 5.5973 -3.3398 2.0243 31 1 7.8781 -2.4695 2.4594 32 1 7.8983 -1.7168 0.8468 33 1 7.6008 -4.7012 1.4137 34 1 9.0763 -3.8988 0.8252 35 1 7.8111 -4.9206 -1.0471 36 1 7.8595 -3.1477 -1.2009 37 1 6.7089 -5.6348 -2.5467 38 1 5.1332 -6.1188 -1.8730 39 1 3.9897 -5.3065 -3.8958 40 1 5.2558 -6.4743 -4.3475 41 1 4.4556 -2.9113 -4.2457 42 1 6.0360 -2.4636 -4.9335 43 1 5.9243 -2.0517 -2.4672 44 1 7.1736 -3.2457 -2.8951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582048778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = -45.440356 kcal Electronic energy + Delta-G solvation = -22148.013655 eV Core-core repulsion = 19099.746717 eV Total energy + Delta-G solvation = -3048.266938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09033 -38.18998 -35.05281 -34.43789 -32.29494 -31.05076 -29.85363 -29.28233 -26.54055 -25.39213 -23.97311 -22.62312 -21.52231 -20.80601 -20.38660 -19.11176 -16.90942 -16.48386 -15.96055 -15.12667 -14.99785 -14.90149 -14.69468 -14.31979 -14.15768 -13.98564 -13.84030 -13.13854 -12.84522 -12.54512 -12.51147 -12.22346 -11.99894 -11.74264 -11.46881 -11.44050 -11.09802 -10.89773 -10.81043 -10.61137 -10.55543 -10.37112 -10.23060 -10.00891 -9.71925 -9.47428 -9.21574 -8.56067 -7.90808 -7.25445 -6.01830 -3.98449 3.29210 3.37070 3.39373 3.89570 4.04078 4.44694 4.64124 4.81239 4.94065 5.03019 5.12270 5.16886 5.23804 5.30198 5.31382 5.35304 5.39650 5.46949 5.52972 5.57039 5.68351 5.71683 5.73516 5.80093 5.88729 5.93860 6.01258 6.11103 6.11677 6.16271 6.17671 6.24162 6.38964 6.49965 6.84302 7.08939 7.20349 7.30421 7.33108 7.68927 8.00601 8.45867 8.72692 9.08217 9.60924 11.11788 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.006561 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.561654 B = 4266.311529 C = 5401.486354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.287 1.287 7 C -0.509 4.509 8 H 0.079 0.921 9 C 0.168 3.832 10 N -0.656 5.656 11 C 0.097 3.903 12 H 0.068 0.932 13 C -0.151 4.151 14 C -0.116 4.116 15 C -0.112 4.112 16 C -0.153 4.153 17 C 0.102 3.898 18 H 0.079 0.921 19 N -0.502 5.502 20 C 0.018 3.982 21 C 0.064 3.936 22 O -0.392 6.392 23 C 0.063 3.937 24 C 0.019 3.981 25 H 0.262 0.738 26 H 0.022 0.978 27 H -0.025 1.025 28 H 0.331 0.669 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.679 -8.853 -2.345 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.213 1.213 7 C -0.548 4.548 8 H 0.097 0.903 9 C 0.040 3.960 10 N -0.284 5.284 11 C -0.015 4.015 12 H 0.086 0.914 13 C -0.190 4.190 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.193 4.193 17 C -0.007 4.007 18 H 0.097 0.903 19 N -0.224 5.224 20 C -0.110 4.110 21 C -0.013 4.013 22 O -0.311 6.311 23 C -0.014 4.014 24 C -0.109 4.109 25 H 0.072 0.928 26 H 0.040 0.960 27 H -0.008 1.008 28 H 0.149 0.851 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.008 -8.736 -3.234 18.521 hybrid contribution 1.315 1.183 1.290 2.189 sum 17.323 -7.553 -1.944 18.998 Atomic orbital electron populations 1.69900 1.06134 1.26720 1.51393 1.24904 0.94705 0.98824 0.94963 0.86848 0.80338 0.84105 0.78315 1.20500 1.19266 1.21251 1.21078 0.89089 0.94675 1.49922 0.90322 1.19976 0.96454 0.85354 0.94182 1.60441 1.03164 1.15835 1.48936 1.21530 0.90776 0.95943 0.93267 0.91369 1.22346 0.95367 1.02287 0.99048 1.21497 0.96178 0.97414 1.00323 1.21446 0.99733 0.97984 0.95844 1.22262 0.98051 1.01628 0.97366 1.21701 0.90694 0.99086 0.89204 0.90302 1.62239 1.56642 1.02434 1.01110 1.22766 0.99098 0.92071 0.97069 1.22631 0.97542 0.91756 0.89341 1.87914 1.76981 1.15921 1.50244 1.22675 1.01517 0.83521 0.93669 1.22776 0.96097 0.98008 0.94024 0.92766 0.95978 1.00792 0.85110 0.91630 0.91892 0.92362 0.92268 0.92074 0.92468 0.92260 0.91674 0.94737 0.89976 0.91915 0.89132 0.91604 0.89050 0.89520 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.51 -14.60 9.87 -34.44 -0.34 -14.94 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.17 4.04 4.31 -4.98 -0.02 4.02 16 10 N -0.66 -13.22 6.07 -107.99 -0.66 -13.88 16 11 C 0.10 1.55 1.78 -67.71 -0.12 1.43 16 12 H 0.07 1.17 6.23 -51.93 -0.32 0.85 16 13 C -0.15 -2.13 5.17 -26.73 -0.14 -2.26 16 14 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 15 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 16 C -0.15 -1.77 4.41 -26.73 -0.12 -1.89 16 17 C 0.10 1.41 1.84 -67.71 -0.12 1.29 16 18 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 19 N -0.50 -7.36 4.50 -226.33 -1.02 -8.38 16 20 C 0.02 0.23 5.41 -3.71 -0.02 0.21 16 21 C 0.06 0.81 7.01 37.21 0.26 1.07 16 22 O -0.39 -5.61 10.83 -35.23 -0.38 -5.99 16 23 C 0.06 0.87 7.01 37.21 0.26 1.13 16 24 C 0.02 0.27 4.76 -3.71 -0.02 0.25 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.55 7.11 -51.93 -0.37 0.19 16 27 H -0.03 -0.61 6.87 -51.93 -0.36 -0.97 16 28 H 0.33 6.61 8.46 -39.29 -0.33 6.28 16 29 H 0.06 1.03 7.46 -51.93 -0.39 0.64 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 6.81 -51.93 -0.35 0.30 16 36 H 0.06 0.78 6.37 -51.93 -0.33 0.45 16 37 H 0.03 0.41 6.80 -51.93 -0.35 0.06 16 38 H 0.08 0.97 8.07 -51.92 -0.42 0.55 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.32 6.45 -51.94 -0.33 0.99 16 44 H 0.04 0.48 6.36 -51.93 -0.33 0.15 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -30.79 327.06 -9.51 -40.30 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.70 Total: 3.75 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.79 Total: -10.65 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.90 Total: -49.43 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.79 -9.51 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582048778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.137 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds