Wall clock time and date at job start Mon Mar 30 2020 01:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48507 * 109.47119 * 89.99974 * 3 2 1 5 5 H 1.48493 * 109.47304 * 210.00213 * 3 2 1 6 6 H 1.48499 * 109.46843 * 330.00199 * 3 2 1 7 7 C 1.37883 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00024 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99923 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47247 * 324.99449 * 11 10 9 13 13 C 1.53002 * 109.47322 * 85.00048 * 11 10 9 14 14 C 1.52993 * 109.46933 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47105 * 299.99508 * 14 13 11 16 16 C 1.53001 * 109.47195 * 60.00418 * 15 14 13 17 17 C 1.52998 * 109.46733 * 300.00144 * 16 15 14 18 18 H 1.08999 * 109.47623 * 299.99337 * 17 16 15 19 19 N 1.46906 * 109.46799 * 179.97438 * 17 16 15 20 20 C 1.47006 * 111.00042 * 71.74903 * 19 17 16 21 21 C 1.53101 * 109.25878 * 177.60788 * 20 19 17 22 22 O 1.43013 * 109.25787 * 56.84941 * 21 20 19 23 23 C 1.43016 * 113.73683 * 301.32900 * 22 21 20 24 24 C 1.47012 * 110.99797 * 308.11051 * 19 17 16 25 25 H 0.96994 * 120.00189 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46670 * 299.99676 * 9 7 2 27 27 H 1.08994 * 109.47201 * 59.99584 * 9 7 2 28 28 H 1.00896 * 110.99558 * 303.95304 * 10 9 7 29 29 H 1.09002 * 109.46754 * 299.99518 * 13 11 10 30 30 H 1.08999 * 109.46717 * 59.99412 * 13 11 10 31 31 H 1.09007 * 109.46911 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47535 * 59.99989 * 14 13 11 33 33 H 1.08997 * 109.46985 * 300.00293 * 15 14 13 34 34 H 1.08997 * 109.46940 * 180.02562 * 15 14 13 35 35 H 1.08993 * 109.47357 * 180.02562 * 16 15 14 36 36 H 1.08997 * 109.46794 * 59.99423 * 16 15 14 37 37 H 1.08998 * 109.50968 * 297.54228 * 20 19 17 38 38 H 1.09008 * 109.50864 * 57.67403 * 20 19 17 39 39 H 1.09001 * 109.50419 * 296.90800 * 21 20 19 40 40 H 1.09003 * 109.50368 * 176.78852 * 21 20 19 41 41 H 1.09004 * 109.50784 * 298.73731 * 23 22 21 42 42 H 1.09002 * 109.50592 * 178.60561 * 23 22 21 43 43 H 1.08989 * 109.51027 * 302.32738 * 24 19 17 44 44 H 1.08998 * 109.50575 * 62.42080 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4465 2.6526 -0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0013 -2.5790 -0.0013 11 6 5.4697 -2.6182 -0.0014 12 1 5.8553 -1.7858 -0.5901 13 6 5.9830 -2.5075 1.4357 14 6 7.5124 -2.5489 1.4356 15 6 7.9868 -3.8691 0.8249 16 6 7.4735 -3.9799 -0.6122 17 6 5.9441 -3.9384 -0.6121 18 1 5.5581 -4.7705 -0.0233 19 7 5.4514 -4.0442 -1.9920 20 6 5.6442 -5.4034 -2.5175 21 6 5.0644 -5.4849 -3.9322 22 8 5.6857 -4.4933 -4.7544 23 6 5.5171 -3.1575 -4.2722 24 6 6.1015 -3.0525 -2.8610 25 1 -0.4850 0.8400 0.0004 26 1 3.8751 -0.6797 -0.8896 27 1 3.8745 -0.6808 0.8904 28 1 3.6255 -3.0961 0.7793 29 1 5.6447 -1.5671 1.8709 30 1 5.5973 -3.3398 2.0243 31 1 7.8781 -2.4695 2.4594 32 1 7.8983 -1.7168 0.8468 33 1 7.6008 -4.7012 1.4137 34 1 9.0763 -3.8988 0.8252 35 1 7.8111 -4.9206 -1.0471 36 1 7.8595 -3.1477 -1.2009 37 1 6.7089 -5.6348 -2.5467 38 1 5.1332 -6.1188 -1.8730 39 1 3.9897 -5.3065 -3.8958 40 1 5.2558 -6.4743 -4.3475 41 1 4.4556 -2.9113 -4.2457 42 1 6.0360 -2.4636 -4.9335 43 1 5.9243 -2.0517 -2.4672 44 1 7.1736 -3.2457 -2.8951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582048778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:55 Heat of formation + Delta-G solvation = -68.427401 kcal Electronic energy + Delta-G solvation = -22149.010448 eV Core-core repulsion = 19099.746717 eV Total energy + Delta-G solvation = -3049.263731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18863 -39.31234 -36.48002 -35.70391 -34.34910 -32.09909 -30.97864 -30.74469 -28.10580 -26.67432 -25.03729 -23.89869 -23.02068 -22.21482 -21.45737 -20.23175 -18.92720 -17.68146 -17.08017 -16.61631 -16.24182 -16.03886 -15.95090 -15.60999 -15.47929 -15.23588 -15.05239 -14.58187 -14.36872 -13.92666 -13.82935 -13.65320 -13.29689 -13.06636 -12.73697 -12.51501 -12.49764 -12.40140 -12.01437 -11.87341 -11.77966 -11.70156 -11.51265 -11.42252 -11.28661 -11.07615 -10.80415 -10.58172 -8.97368 -8.87248 -8.28799 -6.31681 1.31910 1.34452 1.45458 2.33567 2.83429 3.01591 3.05326 3.44934 3.78174 3.90526 4.00346 4.10370 4.13700 4.16683 4.25444 4.26835 4.37496 4.38602 4.44737 4.49406 4.63090 4.69521 4.76312 4.77921 4.82761 4.85329 4.89958 4.99120 5.03084 5.10807 5.13875 5.17808 5.20203 5.25148 5.35702 5.46872 5.57022 6.02544 6.13729 6.23927 6.27929 6.65287 6.73773 6.87729 7.33154 8.88306 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.006561 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.561654 B = 4266.311529 C = 5401.486354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.253 1.253 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.035 0.965 9 C 0.185 3.815 10 N -0.665 5.665 11 C 0.098 3.902 12 H 0.056 0.944 13 C -0.147 4.147 14 C -0.111 4.111 15 C -0.107 4.107 16 C -0.144 4.144 17 C 0.108 3.892 18 H 0.077 0.923 19 N -0.530 5.530 20 C 0.022 3.978 21 C 0.061 3.939 22 O -0.400 6.400 23 C 0.064 3.936 24 C 0.025 3.975 25 H 0.266 0.734 26 H 0.015 0.985 27 H -0.021 1.021 28 H 0.330 0.670 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.119 0.881 41 H 0.041 0.959 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.731 -8.997 -2.157 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.177 1.177 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.293 5.293 11 C -0.013 4.013 12 H 0.075 0.925 13 C -0.186 4.186 14 C -0.149 4.149 15 C -0.145 4.145 16 C -0.184 4.184 17 C -0.001 4.001 18 H 0.095 0.905 19 N -0.253 5.253 20 C -0.106 4.106 21 C -0.015 4.015 22 O -0.319 6.319 23 C -0.013 4.013 24 C -0.103 4.103 25 H 0.075 0.925 26 H 0.033 0.967 27 H -0.003 1.003 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.137 0.863 41 H 0.059 0.941 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.086 -8.906 -3.042 21.280 hybrid contribution 0.286 1.120 1.219 1.679 sum 19.372 -7.786 -1.824 20.957 Atomic orbital electron populations 1.70057 1.08125 1.28042 1.52759 1.25855 0.95588 1.03141 0.94403 0.85697 0.79320 0.78686 0.79086 1.19154 1.17651 1.20681 1.21353 0.91585 0.93199 1.49690 0.94643 1.19637 0.93333 0.87660 0.93761 1.60342 1.06260 1.13503 1.49168 1.21609 0.87866 0.97106 0.94746 0.92537 1.22260 0.97619 1.01493 0.97259 1.21469 0.93729 0.98223 1.01493 1.21434 1.00934 0.97348 0.94815 1.22169 0.95713 1.02116 0.98370 1.21605 0.92502 0.97315 0.88662 0.90465 1.62190 1.57721 1.03704 1.01689 1.22771 0.99919 0.90992 0.96882 1.22780 0.96463 0.92637 0.89664 1.87903 1.77026 1.16136 1.50834 1.22687 1.00293 0.84015 0.94308 1.22686 0.96830 0.97075 0.93747 0.92487 0.96683 1.00348 0.85241 0.93471 0.91407 0.90805 0.92358 0.91443 0.90438 0.91063 0.91943 0.93419 0.89322 0.93703 0.86325 0.94091 0.87003 0.91220 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.95 45.03 27.47 68.60 1.88 46.92 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.52 -30.79 9.87 25.60 0.25 -30.54 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.18 8.98 4.31 85.56 0.37 9.34 16 10 N -0.66 -27.19 6.07 -495.58 -3.01 -30.19 16 11 C 0.10 3.06 1.78 44.92 0.08 3.14 16 12 H 0.06 1.91 6.23 -2.39 -0.01 1.90 16 13 C -0.15 -3.93 5.17 30.59 0.16 -3.77 16 14 C -0.11 -2.25 5.92 30.59 0.18 -2.07 16 15 C -0.11 -1.86 5.92 30.60 0.18 -1.68 16 16 C -0.14 -2.90 4.41 30.59 0.13 -2.76 16 17 C 0.11 2.82 1.84 44.91 0.08 2.91 16 18 H 0.08 2.04 8.01 -2.39 -0.02 2.03 16 19 N -0.53 -15.07 4.50 -869.98 -3.91 -18.98 16 20 C 0.02 0.52 5.41 86.32 0.47 0.99 16 21 C 0.06 1.46 7.01 72.02 0.50 1.97 16 22 O -0.40 -10.96 10.83 -148.98 -1.61 -12.58 16 23 C 0.06 1.73 7.01 72.02 0.50 2.24 16 24 C 0.02 0.67 4.76 86.32 0.41 1.08 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.02 0.76 7.11 -2.38 -0.02 0.74 16 27 H -0.02 -1.00 6.87 -2.39 -0.02 -1.01 16 28 H 0.33 13.49 8.46 -89.70 -0.76 12.73 16 29 H 0.05 1.43 7.46 -2.39 -0.02 1.41 16 30 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 31 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.30 6.81 -2.39 -0.02 1.29 16 36 H 0.06 1.31 6.37 -2.39 -0.02 1.30 16 37 H 0.05 1.00 6.80 -2.39 -0.02 0.98 16 38 H 0.09 1.93 8.07 -2.38 -0.02 1.92 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.29 8.14 -2.38 -0.02 1.28 16 42 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 2.11 6.45 -2.39 -0.02 2.10 16 44 H 0.05 1.24 6.36 -2.39 -0.02 1.23 16 Total: -1.00 -67.81 327.06 -2.41 -70.22 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.15 Total: 23.01 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.79 Total: -18.26 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -6.62 Total: -109.31 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.61 Total: -12.58 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -67.81 -2.41 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582048778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.792 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds