Wall clock time and date at job start Mon Mar 30 2020 00:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.46790 * 180.02562 * 18 17 16 20 20 C 1.39869 * 125.89971 * 95.00265 * 19 18 17 21 21 C 1.35323 * 107.91862 * 179.97438 * 20 19 18 22 22 N 1.34945 * 107.74625 * 0.02562 * 21 20 19 23 23 H 0.96998 * 126.04109 * 180.02562 * 22 21 20 24 24 N 1.30847 * 125.89379 * 274.69162 * 19 18 17 25 25 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 26 26 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 27 27 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 29 29 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 30 30 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 32 32 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 33 33 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 34 34 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 35 35 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 36 36 H 1.00904 * 111.00240 * 303.96453 * 17 16 13 37 37 H 1.09000 * 109.47282 * 300.00189 * 18 17 16 38 38 H 1.08998 * 109.46842 * 60.00449 * 18 17 16 39 39 H 1.07992 * 126.03817 * 0.02562 * 20 19 18 40 40 H 1.07997 * 126.12627 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 6 1.7527 -6.6625 3.0289 20 6 2.5920 -7.6654 2.5328 21 6 1.8882 -8.8209 2.5043 22 7 0.6475 -8.5584 2.9655 23 1 -0.0746 -9.1994 3.0578 24 7 0.5885 -7.1978 3.2939 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3445 0.1082 30 1 2.9879 4.9175 -0.7776 31 1 3.0798 -0.6610 1.1755 32 1 1.5612 -0.3873 2.0628 33 1 3.2602 -2.7166 -0.1361 34 1 3.1484 -2.9236 2.3400 35 1 1.5636 -2.6180 3.0905 36 1 0.7341 -4.5481 1.8691 37 1 3.2054 -5.1359 3.3641 38 1 1.6205 -4.8295 4.1141 39 1 3.6201 -7.5400 2.2273 40 1 2.2538 -9.7810 2.1713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582780549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:44 Heat of formation + Delta-G solvation = 32.693240 kcal Electronic energy + Delta-G solvation = -19792.840043 eV Core-core repulsion = 16644.420889 eV Total energy + Delta-G solvation = -3148.419154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36107 -38.22749 -36.10371 -34.99440 -32.48973 -32.05431 -30.19027 -29.64531 -27.27100 -26.63750 -24.91241 -23.11360 -21.65802 -21.32507 -20.17404 -19.86680 -18.41415 -16.52245 -16.30966 -15.73407 -15.29038 -15.00444 -14.75276 -14.49262 -14.24850 -14.17411 -13.74001 -13.46784 -13.31295 -12.82817 -12.35929 -12.24425 -11.93296 -11.77998 -11.27758 -11.05304 -10.91429 -10.86350 -10.72646 -10.62973 -10.22654 -9.93369 -9.80183 -9.50715 -9.06978 -8.96703 -8.47274 -8.39587 -7.14891 -5.99117 -3.99886 1.62224 2.49119 2.61804 3.37160 3.40413 3.44344 4.07761 4.44717 4.48682 4.55455 4.80367 4.91440 4.99866 5.19229 5.28963 5.36065 5.42757 5.50813 5.56104 5.63310 5.68924 5.74687 5.77877 6.09527 6.22828 6.35060 6.35811 6.46893 6.80155 6.84450 6.99480 7.23283 7.31134 7.36585 7.41908 7.84330 8.09889 8.20409 8.26348 8.59922 9.07888 9.64096 11.11886 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.053472 B = 0.002685 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.512559 B =10427.543692 C =10513.989805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.536 6.536 16 C 0.026 3.974 17 N -0.671 5.671 18 C 0.138 3.862 19 C 0.084 3.916 20 C -0.252 4.252 21 C 0.052 3.948 22 N -0.479 5.479 23 H 0.438 0.562 24 N -0.294 5.294 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.046 0.954 28 H -0.011 1.011 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.368 0.632 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.345 0.655 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.149 0.851 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -23.496 9.411 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.339 6.339 16 C -0.104 4.104 17 N -0.303 5.303 18 C 0.007 3.993 19 C -0.083 4.083 20 C -0.282 4.282 21 C -0.095 4.095 22 N -0.187 5.187 23 H 0.281 0.719 24 N -0.118 5.118 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.007 0.993 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.214 0.786 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.163 0.837 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.167 0.833 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.701 -23.583 8.896 25.262 hybrid contribution -0.081 0.788 0.591 0.989 sum -1.782 -22.795 9.487 24.754 Atomic orbital electron populations 1.22250 0.89096 0.99131 1.00702 1.62023 1.06742 1.17417 1.39200 1.19742 0.95290 0.81601 0.96573 1.21140 1.34662 0.96852 1.01703 0.91858 1.24996 0.95355 0.97354 0.97019 1.69952 1.38513 1.11497 1.34125 0.86544 0.78680 0.78248 0.83838 1.20317 1.21415 1.20105 1.22721 1.00587 0.93863 0.93322 1.21877 0.97578 0.90613 0.84318 0.89012 1.86595 1.22896 1.83895 1.40526 1.22758 1.01737 0.87661 0.98215 1.60356 1.24157 1.08601 1.37207 1.20252 1.01249 0.85601 0.92176 1.22205 0.91304 0.96674 0.98136 1.21447 1.02457 0.91660 1.12635 1.22599 0.86125 1.00644 1.00137 1.46306 1.11819 1.08544 1.52041 0.71872 1.77279 1.21770 0.88982 1.23790 0.90817 0.97284 0.93545 0.99343 0.95334 0.92932 0.91048 0.95538 0.78561 0.90368 0.94464 0.83714 0.88999 0.93867 0.83349 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.17 60.07 0.55 1.30 16 2 N -0.53 -11.70 4.70 -244.37 -1.15 -12.85 16 3 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 4 C -0.50 -14.51 8.52 -34.44 -0.29 -14.80 16 5 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.02 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.12 1.71 3.13 -26.73 -0.08 1.63 16 14 H 0.09 1.41 6.26 -51.93 -0.33 1.09 16 15 O -0.54 -8.72 13.15 -35.23 -0.46 -9.18 16 16 C 0.03 0.31 5.35 -3.82 -0.02 0.28 16 17 N -0.67 -7.77 6.36 -115.05 -0.73 -8.50 16 18 C 0.14 1.39 6.24 -4.97 -0.03 1.36 16 19 C 0.08 0.92 6.73 -82.40 -0.55 0.36 16 20 C -0.25 -2.34 10.74 -40.01 -0.43 -2.77 16 21 C 0.05 0.37 11.99 -17.22 -0.21 0.17 16 22 N -0.48 -3.86 7.36 30.45 0.22 -3.64 16 23 H 0.44 2.07 8.96 -182.61 -1.64 0.43 16 24 N -0.29 -3.37 12.70 33.67 0.43 -2.95 16 25 H 0.07 1.60 6.86 -51.93 -0.36 1.24 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.05 0.82 6.21 -51.93 -0.32 0.49 16 28 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 29 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.37 4.96 9.05 45.56 0.41 5.38 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.34 4.22 8.72 -39.29 -0.34 3.88 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -34.23 335.45 -8.83 -43.07 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.71 Total: 3.85 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.21 Total: -5.50 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.49 Total: -54.30 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.46 Total: -9.18 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.23 -8.83 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582780549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.759 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds