Wall clock time and date at job start Mon Mar 30 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.46790 * 180.02562 * 18 17 16 20 20 C 1.39869 * 125.89971 * 95.00265 * 19 18 17 21 21 C 1.35323 * 107.91862 * 179.97438 * 20 19 18 22 22 N 1.34945 * 107.74625 * 0.02562 * 21 20 19 23 23 H 0.96998 * 126.04109 * 180.02562 * 22 21 20 24 24 N 1.30847 * 125.89379 * 274.69162 * 19 18 17 25 25 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 26 26 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 27 27 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 29 29 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 30 30 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 32 32 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 33 33 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 34 34 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 35 35 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 36 36 H 1.00904 * 111.00240 * 303.96453 * 17 16 13 37 37 H 1.09000 * 109.47282 * 300.00189 * 18 17 16 38 38 H 1.08998 * 109.46842 * 60.00449 * 18 17 16 39 39 H 1.07992 * 126.03817 * 0.02562 * 20 19 18 40 40 H 1.07997 * 126.12627 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 6 1.7527 -6.6625 3.0289 20 6 2.5920 -7.6654 2.5328 21 6 1.8882 -8.8209 2.5043 22 7 0.6475 -8.5584 2.9655 23 1 -0.0746 -9.1994 3.0578 24 7 0.5885 -7.1978 3.2939 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3445 0.1082 30 1 2.9879 4.9175 -0.7776 31 1 3.0798 -0.6610 1.1755 32 1 1.5612 -0.3873 2.0628 33 1 3.2602 -2.7166 -0.1361 34 1 3.1484 -2.9236 2.3400 35 1 1.5636 -2.6180 3.0905 36 1 0.7341 -4.5481 1.8691 37 1 3.2054 -5.1359 3.3641 38 1 1.6205 -4.8295 4.1141 39 1 3.6201 -7.5400 2.2273 40 1 2.2538 -9.7810 2.1713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582780549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:43 Heat of formation + Delta-G solvation = 2.944200 kcal Electronic energy + Delta-G solvation = -19794.130058 eV Core-core repulsion = 16644.420889 eV Total energy + Delta-G solvation = -3149.709169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00957 -39.54111 -37.47948 -36.19899 -34.60296 -32.87638 -30.94830 -30.82428 -29.10563 -27.95356 -26.38244 -24.52796 -22.69046 -22.27543 -21.78805 -20.65819 -19.01913 -18.55101 -17.48746 -17.05800 -16.75975 -16.14000 -15.97747 -15.86950 -15.51664 -15.08474 -15.03251 -14.65686 -14.34633 -14.14746 -13.82512 -13.31503 -13.23286 -13.09515 -12.88011 -12.67909 -12.55263 -12.49769 -12.39593 -11.97143 -11.62360 -11.59218 -11.38335 -10.68859 -10.60422 -10.43560 -9.61186 -9.34823 -8.94281 -8.19785 -6.29591 0.98383 1.41528 1.44977 1.52909 1.80615 2.07553 2.41218 3.04286 3.12686 3.50928 3.73464 3.83728 3.93230 4.00594 4.18159 4.34405 4.41812 4.45442 4.52669 4.61305 4.70805 4.73001 4.80590 4.85873 4.93336 5.06820 5.14194 5.16869 5.19498 5.32631 5.65533 5.69134 5.97921 6.06784 6.29584 6.33864 6.51994 6.65695 6.75312 6.86182 7.09414 7.39938 8.91007 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.053472 B = 0.002685 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.512559 B =10427.543692 C =10513.989805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.025 3.975 13 C 0.129 3.871 14 H 0.087 0.913 15 O -0.554 6.554 16 C 0.038 3.962 17 N -0.676 5.676 18 C 0.141 3.859 19 C 0.067 3.933 20 C -0.280 4.280 21 C 0.069 3.931 22 N -0.474 5.474 23 H 0.450 0.550 24 N -0.334 5.334 25 H 0.054 0.946 26 H 0.010 0.990 27 H 0.076 0.924 28 H -0.039 1.039 29 H 0.006 0.994 30 H 0.265 0.735 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.379 0.621 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.339 0.661 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.158 0.842 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -25.140 8.971 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.069 3.931 14 H 0.104 0.896 15 O -0.360 6.360 16 C -0.092 4.092 17 N -0.308 5.308 18 C 0.011 3.989 19 C -0.099 4.099 20 C -0.309 4.309 21 C -0.079 4.079 22 N -0.183 5.183 23 H 0.297 0.703 24 N -0.160 5.160 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.094 0.906 28 H -0.021 1.021 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.061 0.939 39 H 0.176 0.824 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.795 -25.255 8.472 26.698 hybrid contribution -0.046 1.188 0.767 1.415 sum -1.840 -24.067 9.239 25.845 Atomic orbital electron populations 1.22225 0.88000 1.00750 0.99814 1.61932 1.07857 1.14942 1.41794 1.19398 0.93724 0.83854 0.94867 1.21445 1.34864 0.97530 1.02443 0.92185 1.25913 0.95028 0.98018 1.00735 1.70073 1.39332 1.11929 1.36163 0.85438 0.78793 0.77182 0.79217 1.19329 1.20678 1.19370 1.22832 1.00527 0.95150 0.91942 1.21726 0.97181 0.88822 0.85389 0.89566 1.86556 1.24066 1.83874 1.41474 1.22572 1.02485 0.87505 0.96620 1.60346 1.23789 1.08437 1.38192 1.20269 1.01897 0.85359 0.91412 1.22390 0.91684 0.97201 0.98618 1.21740 1.03221 0.92155 1.13821 1.23244 0.85123 1.01695 0.97819 1.46378 1.12770 1.07830 1.51367 0.70349 1.77195 1.22562 0.90785 1.25448 0.92713 0.97149 0.90593 1.02124 0.97637 0.92660 0.90984 0.94919 0.77279 0.89153 0.93582 0.84336 0.87759 0.93934 0.82433 0.76542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.17 127.69 1.17 2.80 16 2 N -0.54 -24.03 4.70 -927.04 -4.36 -28.39 16 3 C 0.21 11.33 4.72 85.55 0.40 11.74 16 4 C -0.52 -30.58 8.52 25.60 0.22 -30.36 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.44 16 6 C 0.00 0.06 5.46 84.65 0.46 0.52 16 7 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 8 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.02 0.85 4.60 86.30 0.40 1.25 16 13 C 0.13 3.64 3.13 30.60 0.10 3.73 16 14 H 0.09 2.54 6.26 -2.39 -0.01 2.52 16 15 O -0.55 -17.41 13.15 -148.98 -1.96 -19.37 16 16 C 0.04 0.82 5.35 86.30 0.46 1.29 16 17 N -0.68 -14.82 6.36 -517.92 -3.29 -18.12 16 18 C 0.14 2.70 6.24 85.56 0.53 3.23 16 19 C 0.07 1.41 6.73 43.10 0.29 1.70 16 20 C -0.28 -4.72 10.74 21.99 0.24 -4.49 16 21 C 0.07 0.81 11.99 83.54 1.00 1.81 16 22 N -0.47 -6.83 7.36 -57.59 -0.42 -7.25 16 23 H 0.45 3.48 8.96 -213.33 -1.91 1.56 16 24 N -0.33 -7.43 12.70 -47.38 -0.60 -8.03 16 25 H 0.05 2.38 6.86 -2.39 -0.02 2.37 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.08 2.59 6.21 -2.38 -0.01 2.57 16 28 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 29 H 0.01 0.32 7.93 -2.39 -0.02 0.30 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 32 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 33 H 0.38 9.81 9.05 -74.06 -0.67 9.14 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.34 8.03 8.72 -89.69 -0.78 7.25 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.22 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -73.94 335.45 -5.36 -79.30 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -2.30 Total: 18.12 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.27 Total: -6.79 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -8.39 Total: -118.45 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.96 Total: -19.37 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -73.94 -5.36 -79.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582780549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.244 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds