Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48492 * 109.47506 * 270.00212 * 3 2 1 5 5 H 1.48507 * 109.47233 * 30.00473 * 3 2 1 6 6 H 1.48503 * 109.47076 * 150.00016 * 3 2 1 7 7 C 1.37874 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00319 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99895 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99845 * 169.99779 * 10 9 7 12 12 C 1.53053 * 109.36470 * 183.19075 * 11 10 9 13 13 N 1.46955 * 109.36292 * 301.60364 * 12 11 10 14 14 C 1.46900 * 110.99742 * 183.18809 * 13 12 11 15 15 C 1.53005 * 109.47015 * 75.77903 * 14 13 12 16 16 O 1.42894 * 109.47452 * 65.05586 * 15 14 13 17 17 C 1.42899 * 114.00139 * 179.97438 * 16 15 14 18 18 C 1.53775 * 113.61709 * 249.13352 * 17 16 15 19 19 C 1.53951 * 87.02217 * 220.04757 * 18 17 16 20 20 C 1.53781 * 87.11352 * 25.36310 * 19 18 17 21 21 C 1.46956 * 110.88503 * 59.31837 * 13 12 11 22 22 C 1.46955 * 111.00100 * 293.80290 * 10 9 7 23 23 H 0.97000 * 120.00237 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47080 * 60.00562 * 9 7 2 25 25 H 1.08997 * 109.47038 * 299.99964 * 9 7 2 26 26 H 1.08998 * 109.48493 * 63.22288 * 11 10 9 27 27 H 1.08996 * 109.50678 * 303.17503 * 11 10 9 28 28 H 1.08996 * 109.48574 * 181.63381 * 12 11 10 29 29 H 1.08996 * 109.48648 * 61.57219 * 12 11 10 30 30 H 1.08996 * 109.47070 * 315.77866 * 14 13 12 31 31 H 1.09002 * 109.46768 * 195.77301 * 14 13 12 32 32 H 1.09005 * 109.46903 * 185.05684 * 15 14 13 33 33 H 1.08997 * 109.46773 * 305.05142 * 15 14 13 34 34 H 1.08998 * 112.84702 * 20.33839 * 17 16 15 35 35 H 1.09005 * 113.61573 * 334.56888 * 18 17 16 36 36 H 1.09000 * 113.61362 * 105.46761 * 18 17 16 37 37 H 1.08993 * 113.54096 * 270.81128 * 19 18 17 38 38 H 1.09003 * 113.73974 * 139.94192 * 19 18 17 39 39 H 1.08986 * 113.61914 * 220.09075 * 20 19 18 40 40 H 1.09003 * 113.69076 * 89.19126 * 20 19 18 41 41 H 1.09001 * 109.48261 * 60.64378 * 21 13 12 42 42 H 1.08996 * 109.49120 * 180.70773 * 21 13 12 43 43 H 1.08992 * 109.48710 * 296.77720 * 22 10 9 44 44 H 1.08993 * 109.48842 * 56.84659 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5214 -4.8941 0.2365 12 6 2.5570 -6.0188 0.3069 13 7 3.3191 -6.0587 -0.9490 14 6 4.2738 -7.1752 -0.9501 15 6 3.5239 -8.4871 -1.1902 16 8 2.9540 -8.4772 -2.5006 17 6 2.2282 -9.6638 -2.8278 18 6 2.9094 -10.5256 -3.9038 19 6 1.5048 -10.7658 -4.4864 20 6 1.0935 -9.4326 -3.8397 21 6 4.0036 -4.7803 -1.1872 22 6 2.9680 -3.6555 -1.2576 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6249 -2.5571 0.8897 26 1 0.8252 -5.0912 -0.5787 27 1 0.9742 -4.8440 1.1778 28 1 2.0492 -6.9719 0.4546 29 1 3.2366 -5.8357 1.1391 30 1 4.7831 -7.2187 0.0125 31 1 5.0069 -7.0255 -1.7427 32 1 4.2175 -9.3234 -1.1020 33 1 2.7310 -8.5930 -0.4499 34 1 1.9198 -10.2275 -1.9473 35 1 3.5657 -9.9601 -4.5654 36 1 3.3792 -11.4264 -3.5089 37 1 0.9990 -11.6321 -4.0602 38 1 1.4731 -10.7508 -5.5758 39 1 0.0995 -9.4521 -3.3931 40 1 1.2517 -8.5667 -4.4827 41 1 4.6997 -4.5831 -0.3719 42 1 4.5505 -4.8305 -2.1287 43 1 2.2883 -3.8386 -2.0897 44 1 3.4757 -2.7025 -1.4053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588203898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = -14.539993 kcal Electronic energy + Delta-G solvation = -20916.502525 eV Core-core repulsion = 17869.575528 eV Total energy + Delta-G solvation = -3046.926998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.40820 -38.62796 -36.30371 -34.72504 -32.46365 -30.41158 -29.82096 -27.10519 -25.80335 -24.99370 -24.48789 -22.93112 -21.97852 -21.06193 -19.76345 -19.10653 -17.21775 -16.29081 -16.14168 -15.66670 -15.19755 -14.68457 -14.37431 -14.24535 -14.15542 -13.92580 -13.52073 -13.15579 -12.61109 -12.57714 -12.38694 -12.10704 -11.88133 -11.62595 -11.38072 -11.18689 -11.09268 -10.84106 -10.76375 -10.64886 -10.59192 -10.54390 -10.29054 -10.15188 -9.66113 -9.39650 -9.12622 -8.40549 -8.00218 -7.16265 -5.99110 -4.00388 3.34041 3.39953 3.44322 3.69482 4.12417 4.43480 4.45464 4.46718 4.68050 4.71614 5.00614 5.06587 5.09933 5.23312 5.34482 5.37217 5.44629 5.48494 5.55684 5.62448 5.63172 5.66749 5.76686 5.80858 5.85027 5.93768 5.98763 6.01290 6.13708 6.14294 6.28338 6.50378 6.67402 6.76860 7.24047 7.26690 7.40314 7.42170 7.46793 7.84319 8.14116 8.26769 8.60527 9.07282 9.63656 11.11831 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032309 B = 0.003407 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.417632 B = 8216.227120 C = 8496.543248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.058 3.942 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.055 3.945 15 C 0.069 3.931 16 O -0.354 6.354 17 C 0.061 3.939 18 C -0.158 4.158 19 C -0.143 4.143 20 C -0.136 4.136 21 C 0.060 3.940 22 C 0.068 3.932 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -21.088 -4.688 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.073 4.073 15 C -0.008 4.008 16 O -0.273 6.273 17 C 0.003 3.997 18 C -0.196 4.196 19 C -0.180 4.180 20 C -0.173 4.173 21 C -0.068 4.068 22 C -0.061 4.061 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.868 -20.792 -4.802 22.131 hybrid contribution 0.299 0.675 0.233 0.774 sum 6.167 -20.117 -4.569 21.531 Atomic orbital electron populations 1.69963 1.06061 1.26715 1.51129 1.24993 0.94858 0.99290 0.95514 0.86508 0.79789 0.83155 0.78021 1.20731 1.21289 1.19814 1.21163 0.93445 0.89985 1.49884 0.91942 1.19696 0.90067 0.87321 0.96069 1.62279 1.28163 1.02728 1.33278 1.22035 0.94789 0.90007 1.00325 1.22195 0.96311 0.98363 0.89899 1.62094 1.25745 1.03000 1.34672 1.22096 0.94171 0.90569 1.00463 1.22543 0.96363 0.96735 0.85150 1.88087 1.69717 1.37729 1.31729 1.23670 0.93130 0.87104 0.95840 1.23519 0.97125 0.99786 0.99136 1.22685 0.96942 0.97720 1.00698 1.23169 0.97963 0.98111 0.98077 1.22241 0.96033 0.88626 0.99891 1.21974 0.95481 0.97332 0.91263 0.92960 0.99078 0.95294 0.95136 0.91214 0.91527 0.94519 0.93452 0.90336 0.93643 0.93430 0.90140 0.89326 0.91720 0.90264 0.90926 0.91178 0.89014 0.94579 0.91179 0.95265 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.47 8.47 -34.44 -0.29 -14.76 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 9 C 0.19 5.21 4.72 -4.97 -0.02 5.18 16 10 N -0.54 -12.16 4.70 -235.91 -1.11 -13.27 16 11 C 0.06 1.11 5.61 -3.77 -0.02 1.08 16 12 C 0.06 0.96 5.43 -3.77 -0.02 0.94 16 13 N -0.53 -8.33 4.59 -234.47 -1.08 -9.41 16 14 C 0.06 0.69 5.39 -3.82 -0.02 0.67 16 15 C 0.07 0.78 5.97 37.16 0.22 1.00 16 16 O -0.35 -4.66 10.30 -35.23 -0.36 -5.02 16 17 C 0.06 0.63 4.29 -25.92 -0.11 0.52 16 18 C -0.16 -1.38 7.93 -25.83 -0.20 -1.59 16 19 C -0.14 -1.13 8.09 -25.83 -0.21 -1.34 16 20 C -0.14 -1.35 7.92 -25.91 -0.21 -1.55 16 21 C 0.06 1.00 5.57 -3.77 -0.02 0.98 16 22 C 0.07 1.40 5.43 -3.77 -0.02 1.38 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 25 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 28 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.54 7.99 -51.93 -0.42 0.12 16 31 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.53 6.74 -51.93 -0.35 0.18 16 34 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.66 8.14 -51.94 -0.42 0.24 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.85 6.79 -51.93 -0.35 1.49 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -31.05 345.18 -10.77 -41.82 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -8.12 Total: -3.77 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.02 Total: -6.01 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -1.45 Total: -49.09 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.36 Total: -5.02 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.05 -10.77 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588203898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.281 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds