Wall clock time and date at job start Mon Mar 30 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48492 * 109.47506 * 270.00212 * 3 2 1 5 5 H 1.48507 * 109.47233 * 30.00473 * 3 2 1 6 6 H 1.48503 * 109.47076 * 150.00016 * 3 2 1 7 7 C 1.37874 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00319 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99895 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99845 * 169.99779 * 10 9 7 12 12 C 1.53053 * 109.36470 * 183.19075 * 11 10 9 13 13 N 1.46955 * 109.36292 * 301.60364 * 12 11 10 14 14 C 1.46900 * 110.99742 * 183.18809 * 13 12 11 15 15 C 1.53005 * 109.47015 * 75.77903 * 14 13 12 16 16 O 1.42894 * 109.47452 * 65.05586 * 15 14 13 17 17 C 1.42899 * 114.00139 * 179.97438 * 16 15 14 18 18 C 1.53775 * 113.61709 * 249.13352 * 17 16 15 19 19 C 1.53951 * 87.02217 * 220.04757 * 18 17 16 20 20 C 1.53781 * 87.11352 * 25.36310 * 19 18 17 21 21 C 1.46956 * 110.88503 * 59.31837 * 13 12 11 22 22 C 1.46955 * 111.00100 * 293.80290 * 10 9 7 23 23 H 0.97000 * 120.00237 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47080 * 60.00562 * 9 7 2 25 25 H 1.08997 * 109.47038 * 299.99964 * 9 7 2 26 26 H 1.08998 * 109.48493 * 63.22288 * 11 10 9 27 27 H 1.08996 * 109.50678 * 303.17503 * 11 10 9 28 28 H 1.08996 * 109.48574 * 181.63381 * 12 11 10 29 29 H 1.08996 * 109.48648 * 61.57219 * 12 11 10 30 30 H 1.08996 * 109.47070 * 315.77866 * 14 13 12 31 31 H 1.09002 * 109.46768 * 195.77301 * 14 13 12 32 32 H 1.09005 * 109.46903 * 185.05684 * 15 14 13 33 33 H 1.08997 * 109.46773 * 305.05142 * 15 14 13 34 34 H 1.08998 * 112.84702 * 20.33839 * 17 16 15 35 35 H 1.09005 * 113.61573 * 334.56888 * 18 17 16 36 36 H 1.09000 * 113.61362 * 105.46761 * 18 17 16 37 37 H 1.08993 * 113.54096 * 270.81128 * 19 18 17 38 38 H 1.09003 * 113.73974 * 139.94192 * 19 18 17 39 39 H 1.08986 * 113.61914 * 220.09075 * 20 19 18 40 40 H 1.09003 * 113.69076 * 89.19126 * 20 19 18 41 41 H 1.09001 * 109.48261 * 60.64378 * 21 13 12 42 42 H 1.08996 * 109.49120 * 180.70773 * 21 13 12 43 43 H 1.08992 * 109.48710 * 296.77720 * 22 10 9 44 44 H 1.08993 * 109.48842 * 56.84659 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0018 11 6 1.5214 -4.8941 0.2365 12 6 2.5570 -6.0188 0.3069 13 7 3.3191 -6.0587 -0.9490 14 6 4.2738 -7.1752 -0.9501 15 6 3.5239 -8.4871 -1.1902 16 8 2.9540 -8.4772 -2.5006 17 6 2.2282 -9.6638 -2.8278 18 6 2.9094 -10.5256 -3.9038 19 6 1.5048 -10.7658 -4.4864 20 6 1.0935 -9.4326 -3.8397 21 6 4.0036 -4.7803 -1.1872 22 6 2.9680 -3.6555 -1.2576 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6249 -2.5571 0.8897 26 1 0.8252 -5.0912 -0.5787 27 1 0.9742 -4.8440 1.1778 28 1 2.0492 -6.9719 0.4546 29 1 3.2366 -5.8357 1.1391 30 1 4.7831 -7.2187 0.0125 31 1 5.0069 -7.0255 -1.7427 32 1 4.2175 -9.3234 -1.1020 33 1 2.7310 -8.5930 -0.4499 34 1 1.9198 -10.2275 -1.9473 35 1 3.5657 -9.9601 -4.5654 36 1 3.3792 -11.4264 -3.5089 37 1 0.9990 -11.6321 -4.0602 38 1 1.4731 -10.7508 -5.5758 39 1 0.0995 -9.4521 -3.3931 40 1 1.2517 -8.5667 -4.4827 41 1 4.6997 -4.5831 -0.3719 42 1 4.5505 -4.8305 -2.1287 43 1 2.2883 -3.8386 -2.0897 44 1 3.4757 -2.7025 -1.4053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588203898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:08 Heat of formation + Delta-G solvation = -35.986739 kcal Electronic energy + Delta-G solvation = -20917.432526 eV Core-core repulsion = 17869.575528 eV Total energy + Delta-G solvation = -3047.856998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38331 -39.85988 -37.41008 -36.12872 -34.53554 -31.88371 -31.18303 -28.85898 -26.58954 -26.45221 -25.36804 -24.43197 -23.63467 -22.42828 -20.63850 -20.47742 -18.50671 -18.04299 -17.41324 -16.61357 -16.44967 -16.18740 -15.86645 -15.61471 -15.43689 -15.16509 -15.06275 -14.61068 -14.08808 -13.73223 -13.38633 -13.33472 -13.17704 -13.00447 -12.76433 -12.65769 -12.55849 -12.31165 -12.24104 -12.10015 -12.00574 -11.65784 -11.52049 -11.44057 -11.23645 -11.12477 -10.63065 -10.21099 -9.24274 -9.03721 -8.21473 -6.32324 1.40604 1.42479 1.54147 2.39808 2.86394 2.97197 3.10540 3.29182 3.72416 3.76746 3.94775 3.97611 4.01562 4.11138 4.19867 4.31348 4.39227 4.44394 4.46404 4.53938 4.57643 4.67101 4.69337 4.83461 4.86078 4.88653 4.94497 4.98510 5.02158 5.05810 5.06541 5.07161 5.21302 5.26735 5.29191 5.45035 5.62808 6.00957 6.10032 6.13928 6.34061 6.55067 6.60917 6.83464 7.37529 8.90060 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032309 B = 0.003407 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.417632 B = 8216.227120 C = 8496.543248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.055 3.945 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.056 3.944 15 C 0.069 3.931 16 O -0.384 6.384 17 C 0.052 3.948 18 C -0.153 4.153 19 C -0.132 4.132 20 C -0.147 4.147 21 C 0.073 3.927 22 C 0.070 3.930 23 H 0.265 0.735 24 H -0.043 1.043 25 H 0.004 0.996 26 H 0.015 0.985 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.010 0.990 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -22.533 -4.455 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.074 4.074 12 C -0.056 4.056 13 N -0.270 5.270 14 C -0.071 4.071 15 C -0.008 4.008 16 O -0.303 6.303 17 C -0.005 4.005 18 C -0.191 4.191 19 C -0.170 4.170 20 C -0.184 4.184 21 C -0.055 4.055 22 C -0.058 4.058 23 H 0.074 0.926 24 H -0.026 1.026 25 H 0.022 0.978 26 H 0.033 0.967 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.028 0.972 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.705 -22.272 -4.572 24.007 hybrid contribution -0.324 1.069 0.142 1.126 sum 7.381 -21.204 -4.430 22.884 Atomic orbital electron populations 1.70098 1.07844 1.27977 1.51715 1.25967 0.95778 1.03368 0.94689 0.85333 0.78550 0.77964 0.78468 1.19760 1.20636 1.18746 1.21446 0.93615 0.90961 1.50185 0.91804 1.19353 0.90107 0.89128 0.93172 1.62236 1.27240 1.03009 1.34305 1.22145 0.95788 0.89747 0.99693 1.22085 0.95533 0.97720 0.90248 1.62066 1.26993 1.03369 1.34609 1.22197 0.93720 0.89602 1.01619 1.22612 0.96812 0.96812 0.84519 1.88051 1.70303 1.39299 1.32666 1.23905 0.93217 0.86745 0.96665 1.23460 0.97351 0.99881 0.98386 1.22683 0.96298 0.96965 1.01004 1.23213 0.98200 0.98687 0.98329 1.22072 0.94533 0.87830 1.01112 1.21961 0.95702 0.98546 0.89638 0.92633 1.02580 0.97797 0.96690 0.91087 0.88955 0.94044 0.91621 0.89915 0.91066 0.93292 0.88698 0.90411 0.90074 0.88558 0.90449 0.91107 0.91039 0.94171 0.89275 0.97219 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.52 -30.70 8.47 25.60 0.22 -30.48 16 8 H 0.06 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.77 4.72 85.56 0.40 12.18 16 10 N -0.54 -25.15 4.70 -900.29 -4.23 -29.38 16 11 C 0.05 2.14 5.61 86.31 0.48 2.63 16 12 C 0.07 2.17 5.43 86.31 0.47 2.64 16 13 N -0.54 -16.21 4.59 -895.72 -4.11 -20.32 16 14 C 0.06 1.23 5.39 86.30 0.46 1.69 16 15 C 0.07 1.36 5.97 71.98 0.43 1.79 16 16 O -0.38 -9.48 10.30 -148.98 -1.53 -11.02 16 17 C 0.05 1.00 4.29 31.12 0.13 1.13 16 18 C -0.15 -2.37 7.93 31.18 0.25 -2.12 16 19 C -0.13 -1.85 8.09 31.18 0.25 -1.60 16 20 C -0.15 -2.82 7.92 31.12 0.25 -2.58 16 21 C 0.07 2.34 5.57 86.31 0.48 2.82 16 22 C 0.07 2.95 5.43 86.31 0.47 3.42 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.04 -2.70 8.12 -2.39 -0.02 -2.71 16 25 H 0.00 0.24 8.03 -2.39 -0.02 0.22 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 2.70 8.07 -2.39 -0.02 2.68 16 28 H 0.09 2.33 6.71 -2.39 -0.02 2.31 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.23 7.99 -2.39 -0.02 1.21 16 31 H 0.08 1.76 7.84 -2.39 -0.02 1.75 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.05 0.94 6.74 -2.39 -0.02 0.93 16 34 H 0.10 1.49 7.88 -2.39 -0.02 1.47 16 35 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.09 2.54 8.00 -2.39 -0.02 2.52 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 3.08 6.79 -2.39 -0.02 3.06 16 Total: -1.00 -68.40 345.18 -1.87 -70.27 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.93 Total: 8.93 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.76 Total: -8.03 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -8.06 Total: -107.27 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.53 Total: -11.02 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.40 -1.87 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588203898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.284 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds