Wall clock time and date at job start Mon Mar 30 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48496 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46907 * 300.00409 * 3 2 1 6 6 H 1.48501 * 109.46832 * 59.99772 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46632 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46783 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00292 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 N 1.46899 * 109.47254 * 179.97438 * 17 16 15 19 19 C 1.48534 * 110.99830 * 52.60377 * 18 17 16 20 20 C 1.54939 * 103.22817 * 159.71871 * 19 18 17 21 21 C 1.54596 * 102.92012 * 322.58829 * 20 19 18 22 22 C 1.47901 * 111.00170 * 169.99716 * 18 17 16 23 23 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.47315 * 300.00191 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.47289 * 299.99690 * 10 9 7 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 30 30 H 1.09002 * 109.47193 * 60.00246 * 12 11 10 31 31 H 1.08992 * 109.47333 * 299.99245 * 12 11 10 32 32 H 0.97004 * 120.00228 * 0.02562 * 15 13 12 33 33 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 34 34 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 35 35 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 36 36 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 37 37 H 1.08996 * 110.66891 * 278.15580 * 19 18 17 38 38 H 1.09001 * 110.67193 * 41.28416 * 19 18 17 39 39 H 1.08998 * 110.72475 * 204.22657 * 20 19 18 40 40 H 1.09000 * 110.72444 * 80.94246 * 20 19 18 41 41 H 1.09001 * 110.31032 * 263.03776 * 21 20 19 42 42 H 1.09004 * 110.30836 * 140.87248 * 21 20 19 43 43 H 1.08999 * 109.91618 * 333.51273 * 22 18 17 44 44 H 1.09004 * 109.91578 * 94.60372 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4800 -4.9871 -0.0046 12 6 2.4743 -6.1500 -0.0050 13 6 1.7207 -7.4551 -0.0061 14 8 0.5079 -7.4551 -0.0061 15 7 2.3945 -8.6224 -0.0072 16 6 1.6621 -9.8911 -0.0089 17 6 2.6562 -11.0540 -0.0091 18 7 1.9217 -12.3262 -0.0102 19 6 0.9267 -12.3654 -1.1124 20 6 0.6550 -13.8802 -1.2911 21 6 2.0481 -14.5105 -1.0628 22 6 2.8343 -13.4650 -0.2504 23 1 -0.4851 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6239 -2.5575 0.8880 26 1 2.8718 -3.6052 0.8873 27 1 2.8717 -3.6037 -0.8927 28 1 0.8536 -5.0438 -0.8947 29 1 0.8531 -5.0459 0.8852 30 1 3.1003 -6.0932 0.8856 31 1 3.1015 -6.0915 -0.8944 32 1 3.3646 -8.6225 -0.0068 33 1 1.0357 -9.9478 -0.8992 34 1 1.0350 -9.9497 0.8807 35 1 3.2822 -10.9971 0.8814 36 1 3.2835 -10.9955 -0.8986 37 1 0.0145 -11.8421 -0.8259 38 1 1.3454 -11.9394 -2.0241 39 1 0.2964 -14.0916 -2.2985 40 1 -0.0559 -14.2353 -0.5451 41 1 2.5404 -14.6962 -2.0173 42 1 1.9557 -15.4378 -0.4972 43 1 3.7034 -13.1312 -0.8172 44 1 3.1531 -13.8922 0.7004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588748829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:46 Heat of formation + Delta-G solvation = -63.270393 kcal Electronic energy + Delta-G solvation = -19562.308225 eV Core-core repulsion = 16513.268119 eV Total energy + Delta-G solvation = -3049.040106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88337 -39.15455 -35.47206 -34.75911 -32.73667 -32.44102 -29.94357 -29.38048 -27.92758 -25.50064 -23.50313 -22.21206 -21.32035 -20.98800 -20.20334 -19.92646 -16.94465 -16.73565 -16.19826 -16.15113 -15.89415 -15.46353 -15.08675 -14.46459 -14.36811 -13.90492 -13.64238 -13.18323 -13.11697 -12.64341 -12.51927 -12.12220 -11.85384 -11.74607 -11.65537 -11.59399 -11.49425 -11.44332 -11.00514 -10.97729 -10.51225 -10.46840 -10.38682 -9.81214 -9.58930 -9.20067 -9.16653 -8.95169 -8.90319 -8.28978 -5.93516 -3.95895 2.75396 2.96063 3.34295 3.41375 3.45404 3.71365 4.17255 4.22413 4.49456 4.50448 4.59120 4.70703 4.83244 4.94419 5.05819 5.07698 5.19365 5.34173 5.35374 5.38764 5.40055 5.42079 5.53855 5.55570 5.64585 5.68119 5.74314 5.89692 6.16905 6.26668 6.33692 6.38956 6.54836 6.58357 6.87016 7.05111 7.22661 7.43567 7.76630 7.92630 8.08250 8.28415 8.50060 9.12111 9.67650 11.17845 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.071187 B = 0.002140 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.236020 B =13081.368479 C =13329.706676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.512 3.488 14 O -0.534 6.534 15 N -0.740 5.740 16 C 0.118 3.882 17 C 0.037 3.963 18 N -0.514 5.514 19 C 0.028 3.972 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.035 3.965 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -29.551 -1.992 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.300 3.700 14 O -0.410 6.410 15 N -0.394 5.394 16 C -0.006 4.006 17 C -0.092 4.092 18 N -0.239 5.239 19 C -0.100 4.100 20 C -0.163 4.163 21 C -0.170 4.170 22 C -0.092 4.092 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.275 -29.469 -1.478 30.166 hybrid contribution 1.410 1.002 -0.779 1.897 sum 7.685 -28.467 -2.257 29.572 Atomic orbital electron populations 1.69987 1.06039 1.26371 1.51053 1.25051 0.94852 0.99252 0.95513 0.86551 0.80064 0.83930 0.77527 1.19796 1.21076 1.21058 1.21325 0.93019 0.91199 1.50209 0.92703 1.19106 0.94088 0.91293 0.97340 1.21650 0.99070 0.94017 1.00054 1.21454 0.97029 0.92699 1.02975 1.21793 1.00086 0.91953 1.03970 1.21105 0.88458 0.85491 0.74986 1.90713 1.14255 1.87649 1.48344 1.46022 1.10220 1.05686 1.77444 1.21289 0.94453 0.81803 1.03029 1.22461 0.95856 0.89216 1.01675 1.64769 1.13674 1.01873 1.43561 1.23339 0.96838 0.97066 0.92711 1.22492 0.97166 0.94582 1.02031 1.22403 0.95937 0.98672 0.99990 1.22891 0.94639 0.91640 1.00075 0.93115 0.96588 0.96553 0.93466 0.93504 0.91822 0.91781 0.89106 0.89177 0.76743 0.91553 0.90679 0.89838 0.93984 0.89422 0.93450 0.90914 0.90539 0.91477 0.90860 0.93648 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 13 C 0.51 7.27 7.83 -10.98 -0.09 7.19 16 14 O -0.53 -10.00 15.98 5.55 0.09 -9.92 16 15 N -0.74 -7.51 5.56 -60.29 -0.33 -7.84 16 16 C 0.12 1.16 5.33 -4.04 -0.02 1.14 16 17 C 0.04 0.27 5.14 -3.83 -0.02 0.25 16 18 N -0.51 -4.06 5.40 -230.46 -1.24 -5.30 16 19 C 0.03 0.21 5.10 -1.90 -0.01 0.20 16 20 C -0.12 -0.75 7.06 -24.87 -0.18 -0.92 16 21 C -0.13 -0.71 6.93 -25.38 -0.18 -0.89 16 22 C 0.04 0.22 6.69 -2.76 -0.02 0.20 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 2.78 8.47 -40.82 -0.35 2.43 16 33 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.28 7.81 -51.93 -0.41 -0.12 16 37 H 0.09 0.71 7.66 -51.93 -0.40 0.31 16 38 H 0.05 0.35 8.00 -51.93 -0.42 -0.06 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -34.16 354.47 -10.10 -44.26 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.19 Total: -3.74 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.47 Total: -12.84 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.84 Total: -40.15 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.16 -10.10 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588748829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.010 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds