Wall clock time and date at job start Mon Mar 30 2020 01:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48496 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46907 * 300.00409 * 3 2 1 6 6 H 1.48501 * 109.46832 * 59.99772 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46632 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46783 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00292 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 N 1.46899 * 109.47254 * 179.97438 * 17 16 15 19 19 C 1.48534 * 110.99830 * 52.60377 * 18 17 16 20 20 C 1.54939 * 103.22817 * 159.71871 * 19 18 17 21 21 C 1.54596 * 102.92012 * 322.58829 * 20 19 18 22 22 C 1.47901 * 111.00170 * 169.99716 * 18 17 16 23 23 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.47315 * 300.00191 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.47289 * 299.99690 * 10 9 7 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 30 30 H 1.09002 * 109.47193 * 60.00246 * 12 11 10 31 31 H 1.08992 * 109.47333 * 299.99245 * 12 11 10 32 32 H 0.97004 * 120.00228 * 0.02562 * 15 13 12 33 33 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 34 34 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 35 35 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 36 36 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 37 37 H 1.08996 * 110.66891 * 278.15580 * 19 18 17 38 38 H 1.09001 * 110.67193 * 41.28416 * 19 18 17 39 39 H 1.08998 * 110.72475 * 204.22657 * 20 19 18 40 40 H 1.09000 * 110.72444 * 80.94246 * 20 19 18 41 41 H 1.09001 * 110.31032 * 263.03776 * 21 20 19 42 42 H 1.09004 * 110.30836 * 140.87248 * 21 20 19 43 43 H 1.08999 * 109.91618 * 333.51273 * 22 18 17 44 44 H 1.09004 * 109.91578 * 94.60372 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4800 -4.9871 -0.0046 12 6 2.4743 -6.1500 -0.0050 13 6 1.7207 -7.4551 -0.0061 14 8 0.5079 -7.4551 -0.0061 15 7 2.3945 -8.6224 -0.0072 16 6 1.6621 -9.8911 -0.0089 17 6 2.6562 -11.0540 -0.0091 18 7 1.9217 -12.3262 -0.0102 19 6 0.9267 -12.3654 -1.1124 20 6 0.6550 -13.8802 -1.2911 21 6 2.0481 -14.5105 -1.0628 22 6 2.8343 -13.4650 -0.2504 23 1 -0.4851 0.8401 0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6239 -2.5575 0.8880 26 1 2.8718 -3.6052 0.8873 27 1 2.8717 -3.6037 -0.8927 28 1 0.8536 -5.0438 -0.8947 29 1 0.8531 -5.0459 0.8852 30 1 3.1003 -6.0932 0.8856 31 1 3.1015 -6.0915 -0.8944 32 1 3.3646 -8.6225 -0.0068 33 1 1.0357 -9.9478 -0.8992 34 1 1.0350 -9.9497 0.8807 35 1 3.2822 -10.9971 0.8814 36 1 3.2835 -10.9955 -0.8986 37 1 0.0145 -11.8421 -0.8259 38 1 1.3454 -11.9394 -2.0241 39 1 0.2964 -14.0916 -2.2985 40 1 -0.0559 -14.2353 -0.5451 41 1 2.5404 -14.6962 -2.0173 42 1 1.9557 -15.4378 -0.4972 43 1 3.7034 -13.1312 -0.8172 44 1 3.1531 -13.8922 0.7004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588748829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:45 Heat of formation + Delta-G solvation = -87.390000 kcal Electronic energy + Delta-G solvation = -19563.354130 eV Core-core repulsion = 16513.268119 eV Total energy + Delta-G solvation = -3050.086011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87826 -39.84773 -36.76062 -36.14219 -34.60875 -33.29221 -31.53248 -29.96702 -28.89279 -27.17340 -24.57001 -23.61432 -21.95119 -21.74348 -21.56606 -21.16078 -18.42429 -17.96266 -17.41255 -17.07539 -16.75230 -16.49482 -16.28246 -16.06074 -15.28035 -14.97222 -14.65052 -14.53372 -13.98033 -13.80078 -13.59229 -13.56934 -13.28965 -13.05572 -12.83684 -12.36020 -12.35647 -12.29136 -12.14843 -12.13574 -12.09456 -12.01223 -11.44166 -11.37293 -11.35784 -11.15723 -10.79826 -10.55626 -10.14486 -9.46085 -8.18589 -6.30758 1.40539 1.41634 1.55140 1.64138 2.08457 2.42145 3.09814 3.14076 3.62126 3.72341 3.85929 3.96211 4.02821 4.07776 4.15006 4.17064 4.31805 4.41492 4.58286 4.65809 4.68092 4.69876 4.81173 4.85236 4.86808 4.92027 4.92720 4.95699 5.06047 5.17781 5.20077 5.29069 5.34078 5.34382 5.42853 5.58007 5.78669 5.85717 5.88585 5.98832 6.25587 6.54259 6.88063 7.26772 7.38849 8.93883 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.071187 B = 0.002140 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.236020 B =13081.368479 C =13329.706676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.510 3.490 14 O -0.590 6.590 15 N -0.717 5.717 16 C 0.122 3.878 17 C 0.047 3.953 18 N -0.531 5.531 19 C 0.025 3.975 20 C -0.124 4.124 21 C -0.129 4.129 22 C 0.034 3.966 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.419 0.581 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.708 -30.312 -2.209 32.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.166 4.166 13 C 0.299 3.701 14 O -0.470 6.470 15 N -0.371 5.371 16 C -0.002 4.002 17 C -0.082 4.082 18 N -0.256 5.256 19 C -0.102 4.102 20 C -0.162 4.162 21 C -0.167 4.167 22 C -0.094 4.094 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.256 0.744 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.482 -30.274 -1.694 31.769 hybrid contribution 0.382 1.195 -0.705 1.439 sum 9.864 -29.079 -2.399 30.800 Atomic orbital electron populations 1.70143 1.08081 1.27676 1.51969 1.26118 0.95815 1.03819 0.94840 0.85311 0.79192 0.78334 0.77657 1.18039 1.20497 1.20490 1.21790 0.93778 0.92190 1.50066 0.91500 1.19075 0.94743 0.93885 0.94310 1.21449 0.97798 0.92662 1.01393 1.21254 0.97549 0.93753 1.00975 1.21671 0.98879 0.89207 1.06855 1.21250 0.87761 0.86747 0.74384 1.90704 1.16645 1.88410 1.51226 1.45791 1.11226 1.04722 1.75393 1.21246 0.94971 0.82525 1.01501 1.22375 0.95046 0.87948 1.02827 1.64760 1.14387 1.02511 1.43951 1.23323 0.96311 0.98001 0.92585 1.22498 0.97705 0.93536 1.02468 1.22414 0.95226 0.98629 1.00465 1.22953 0.94656 0.91208 1.00568 0.92871 0.99737 0.99734 0.91980 0.91979 0.93941 0.93969 0.86155 0.86155 0.74364 0.92768 0.92703 0.88705 0.92625 0.90922 0.93450 0.89980 0.91014 0.90545 0.90136 0.92835 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.29 21.45 0.28 -59.25 16 2 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 0.94 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.10 -3.55 4.50 30.60 0.14 -3.42 16 12 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 13 C 0.51 14.02 7.83 87.66 0.69 14.71 16 14 O -0.59 -22.72 15.98 -3.05 -0.05 -22.77 16 15 N -0.72 -13.23 5.56 -463.06 -2.57 -15.81 16 16 C 0.12 2.32 5.33 86.38 0.46 2.78 16 17 C 0.05 0.60 5.14 86.30 0.44 1.04 16 18 N -0.53 -7.75 5.40 -883.03 -4.77 -12.52 16 19 C 0.03 0.37 5.10 86.65 0.44 0.81 16 20 C -0.12 -1.38 7.06 31.80 0.22 -1.15 16 21 C -0.13 -1.15 6.93 31.47 0.22 -0.94 16 22 C 0.03 0.36 6.69 86.44 0.58 0.94 16 23 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 1.70 8.10 -2.39 -0.02 1.69 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.42 4.43 8.47 -92.71 -0.79 3.64 16 33 H 0.05 1.19 6.80 -2.39 -0.02 1.17 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.59 7.81 -2.39 -0.02 0.57 16 37 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 38 H 0.05 0.67 8.00 -2.39 -0.02 0.65 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.05 0.48 7.57 -2.39 -0.02 0.46 16 44 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -76.67 354.47 -0.55 -77.22 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.16 Total: 8.23 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 4.36 Total: -22.24 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -7.05 Total: -87.57 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.67 -0.55 -77.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588748829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.169 kcal (2) G-P(sol) polarization free energy of solvation -76.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds