Wall clock time and date at job start Mon Mar 30 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47294 * 2 1 4 4 N 1.30295 * 126.35142 * 90.02057 * 3 2 1 5 5 N 1.28527 * 110.05535 * 179.97438 * 4 3 2 6 6 C 1.31211 * 109.86101 * 0.02562 * 5 4 3 7 7 N 1.38582 * 126.47469 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00280 * 255.99134 * 7 6 5 9 9 C 1.50710 * 109.46946 * 65.33907 * 8 7 6 10 10 H 1.07995 * 119.99747 * 4.29611 * 9 8 7 11 11 C 1.37871 * 119.99861 * 184.30161 * 9 8 7 12 12 N 1.31514 * 120.00414 * 5.11189 * 11 9 8 13 13 Si 1.86797 * 120.00132 * 185.10981 * 11 9 8 14 14 H 1.48503 * 109.47439 * 94.99102 * 13 11 9 15 15 H 1.48499 * 109.47565 * 214.99498 * 13 11 9 16 16 H 1.48503 * 109.46868 * 334.99268 * 13 11 9 17 17 C 1.46903 * 110.99970 * 19.94870 * 7 6 5 18 18 C 1.52991 * 109.47463 * 163.19983 * 17 7 6 19 19 O 1.42905 * 109.46972 * 66.93543 * 18 17 7 20 20 C 1.42906 * 113.99790 * 184.82615 * 19 18 17 21 21 N 1.36451 * 107.05345 * 359.97438 * 6 5 4 22 22 C 1.46501 * 127.13453 * 179.97438 * 21 6 5 23 23 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46955 * 300.00058 * 1 2 3 25 25 H 1.09000 * 109.46768 * 59.99856 * 1 2 3 26 26 H 1.08999 * 109.46955 * 239.99942 * 2 1 3 27 27 H 1.09000 * 109.46768 * 120.00144 * 2 1 3 28 28 H 1.09001 * 109.47358 * 185.32885 * 8 7 6 29 29 H 1.08995 * 109.47320 * 305.33658 * 8 7 6 30 30 H 0.96994 * 120.00728 * 180.02562 * 12 11 9 31 31 H 1.09008 * 109.46661 * 283.20254 * 17 7 6 32 32 H 1.09002 * 109.46949 * 43.19760 * 17 7 6 33 33 H 1.09002 * 109.47350 * 186.93082 * 18 17 7 34 34 H 1.08996 * 109.47323 * 306.93261 * 18 17 7 35 35 H 1.08996 * 109.47142 * 64.93329 * 20 19 18 36 36 H 1.08996 * 109.46590 * 184.93141 * 20 19 18 37 37 H 1.08995 * 109.46720 * 304.93278 * 20 19 18 38 38 H 1.09001 * 109.47072 * 95.09078 * 22 21 6 39 39 H 1.09001 * 109.47252 * 215.09163 * 22 21 6 40 40 H 1.09003 * 109.47382 * 335.08873 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2902 2.1487 1.0494 5 7 2.7018 3.3117 0.6887 6 6 2.7284 3.3888 -0.6208 7 7 3.1160 4.4858 -1.3738 8 6 1.9485 5.1762 -1.9379 9 6 1.1235 5.7624 -0.8211 10 1 1.4706 5.6951 0.1993 11 6 -0.0744 6.3844 -1.1022 12 7 -0.5462 6.3786 -2.3298 13 14 -1.0273 7.2354 0.2605 14 1 -0.6865 8.6807 0.2748 15 1 -2.4840 7.0726 0.0221 16 1 -0.6690 6.6293 1.5680 17 6 3.9384 5.4067 -0.5777 18 6 4.6844 6.3615 -1.5118 19 8 3.7464 7.2211 -2.1625 20 6 4.3300 8.0826 -3.1420 21 7 2.3024 2.1849 -1.1013 22 6 2.1624 1.7926 -2.5059 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2834 5.9748 -2.5998 29 1 1.3440 4.4661 -2.5020 30 1 -1.3888 6.8165 -2.5277 31 1 3.2971 5.9803 0.0916 32 1 4.6582 4.8361 0.0092 33 1 5.3863 6.9617 -0.9328 34 1 5.2295 5.7860 -2.2598 35 1 4.7299 7.4840 -3.9603 36 1 3.5699 8.7624 -3.5269 37 1 5.1352 8.6584 -2.6858 38 1 3.0637 1.2718 -2.8292 39 1 1.3022 1.1320 -2.6147 40 1 2.0171 2.6822 -3.1189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589230308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:20 Heat of formation + Delta-G solvation = 44.225020 kcal Electronic energy + Delta-G solvation = -21784.541105 eV Core-core repulsion = 18636.622006 eV Total energy + Delta-G solvation = -3147.919099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21049 -37.92380 -36.12446 -34.57520 -33.25693 -32.41645 -29.53507 -28.32837 -27.14520 -26.33016 -25.47820 -23.83316 -22.63880 -21.89948 -19.96597 -19.61510 -16.91355 -16.33257 -15.92420 -15.87655 -15.50870 -14.91702 -14.54259 -14.33202 -14.11522 -13.81588 -13.53465 -13.04309 -12.69161 -12.44052 -12.23119 -11.75533 -11.61118 -11.59677 -11.17476 -11.14114 -11.01574 -10.89163 -10.79959 -10.67473 -10.33067 -9.95939 -9.89207 -9.53960 -9.38243 -9.03924 -8.53746 -8.31767 -7.36739 -5.99342 -4.01324 2.49375 2.96703 3.35276 3.41190 3.49652 3.63291 4.38282 4.50711 4.67715 4.74877 5.00583 5.16895 5.35538 5.36312 5.45724 5.55066 5.59647 5.69468 5.76276 5.78044 5.83455 5.83754 5.88571 5.92542 6.04349 6.09766 6.19239 6.32147 6.47239 6.71681 6.78211 7.10773 7.39378 7.61214 7.67077 7.78019 7.97896 8.25169 8.27083 9.03896 9.54328 9.63113 11.08543 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.008090 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.690357 B = 3460.160542 C = 4542.777455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 C 0.150 3.850 4 N -0.290 5.290 5 N -0.332 5.332 6 C 0.405 3.595 7 N -0.468 5.468 8 C 0.187 3.813 9 C -0.534 4.534 10 H 0.066 0.934 11 C 0.068 3.932 12 N -0.895 5.895 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.073 3.927 18 C 0.070 3.930 19 O -0.356 6.356 20 C 0.031 3.969 21 N -0.478 5.478 22 C 0.083 3.917 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.260 0.740 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -7.956 -3.034 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.118 4.118 4 N -0.129 5.129 5 N -0.176 5.176 6 C 0.049 3.951 7 N -0.193 5.193 8 C 0.064 3.936 9 C -0.573 4.573 10 H 0.084 0.916 11 C -0.134 4.134 12 N -0.535 5.535 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.197 1.197 17 C -0.054 4.054 18 C -0.007 4.007 19 O -0.274 6.274 20 C -0.066 4.066 21 N -0.173 5.173 22 C -0.060 4.060 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.661 -7.632 -2.080 11.012 hybrid contribution -1.011 0.564 -0.371 1.216 sum 6.650 -7.068 -2.451 10.009 Atomic orbital electron populations 1.21754 0.94108 1.01716 1.03034 1.19799 0.96233 0.86926 1.03481 1.24426 1.07036 0.97489 0.82851 1.73800 1.15336 0.99402 1.24403 1.74606 1.23069 1.12131 1.07843 1.22622 0.96518 0.87048 0.88908 1.59511 1.22969 1.06228 1.30547 1.20250 0.83939 0.93874 0.95570 1.21665 1.04903 1.36632 0.94096 0.91629 1.24817 0.97071 0.96119 0.95352 1.69934 1.20531 1.44120 1.18870 0.86639 0.78899 0.80105 0.82851 1.20604 1.21453 1.19745 1.21964 0.96115 0.92992 0.94373 1.22495 0.91500 0.91583 0.95157 1.88312 1.32645 1.52317 1.54133 1.22658 0.98491 0.93860 0.91624 1.45877 1.51907 1.11410 1.08119 1.21941 1.02134 1.02958 0.78976 0.91914 0.91783 0.92639 0.90728 0.88955 0.90577 0.95648 0.93089 0.90251 0.90589 0.93444 0.93536 0.94836 0.90091 0.95108 0.91059 0.90289 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.90 37.16 0.37 -1.46 16 2 C -0.02 -0.31 6.24 -27.88 -0.17 -0.49 16 3 C 0.15 2.77 7.32 -154.02 -1.13 1.64 16 4 N -0.29 -6.44 12.18 32.99 0.40 -6.04 16 5 N -0.33 -7.97 11.29 30.31 0.34 -7.63 16 6 C 0.41 9.04 6.01 -318.88 -1.92 7.12 16 7 N -0.47 -10.20 4.67 -175.88 -0.82 -11.02 16 8 C 0.19 4.71 4.56 -4.97 -0.02 4.69 16 9 C -0.53 -15.07 7.69 -34.44 -0.26 -15.33 16 10 H 0.07 1.95 6.29 -52.49 -0.33 1.62 16 11 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 12 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 13 Si 0.89 22.69 29.54 -169.99 -5.02 17.67 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.07 1.48 4.83 -3.83 -0.02 1.46 16 18 C 0.07 1.20 6.23 37.15 0.23 1.43 16 19 O -0.36 -7.03 7.73 -35.23 -0.27 -7.30 16 20 C 0.03 0.46 11.01 101.05 1.11 1.57 16 21 N -0.48 -9.11 3.21 -121.46 -0.39 -9.50 16 22 C 0.08 1.20 10.84 59.85 0.65 1.85 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 2.01 5.47 -51.93 -0.28 1.72 16 29 H 0.03 0.68 6.65 -51.93 -0.35 0.34 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.08 1.84 5.98 -51.92 -0.31 1.53 16 32 H 0.08 1.43 7.81 -51.93 -0.41 1.02 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.10 1.56 6.54 -51.93 -0.34 1.22 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -34.13 327.79 -7.55 -41.68 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.21 Total: -1.59 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.26 Total: 4.35 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.27 Total: -59.76 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.27 Total: -7.30 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.13 -7.55 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589230308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.904 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds