Wall clock time and date at job start Mon Mar 30 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47294 * 2 1 4 4 N 1.30295 * 126.35142 * 90.02057 * 3 2 1 5 5 N 1.28527 * 110.05535 * 179.97438 * 4 3 2 6 6 C 1.31211 * 109.86101 * 0.02562 * 5 4 3 7 7 N 1.38582 * 126.47469 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00280 * 255.99134 * 7 6 5 9 9 C 1.50710 * 109.46946 * 65.33907 * 8 7 6 10 10 H 1.07995 * 119.99747 * 4.29611 * 9 8 7 11 11 C 1.37871 * 119.99861 * 184.30161 * 9 8 7 12 12 N 1.31514 * 120.00414 * 5.11189 * 11 9 8 13 13 Si 1.86797 * 120.00132 * 185.10981 * 11 9 8 14 14 H 1.48503 * 109.47439 * 94.99102 * 13 11 9 15 15 H 1.48499 * 109.47565 * 214.99498 * 13 11 9 16 16 H 1.48503 * 109.46868 * 334.99268 * 13 11 9 17 17 C 1.46903 * 110.99970 * 19.94870 * 7 6 5 18 18 C 1.52991 * 109.47463 * 163.19983 * 17 7 6 19 19 O 1.42905 * 109.46972 * 66.93543 * 18 17 7 20 20 C 1.42906 * 113.99790 * 184.82615 * 19 18 17 21 21 N 1.36451 * 107.05345 * 359.97438 * 6 5 4 22 22 C 1.46501 * 127.13453 * 179.97438 * 21 6 5 23 23 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46955 * 300.00058 * 1 2 3 25 25 H 1.09000 * 109.46768 * 59.99856 * 1 2 3 26 26 H 1.08999 * 109.46955 * 239.99942 * 2 1 3 27 27 H 1.09000 * 109.46768 * 120.00144 * 2 1 3 28 28 H 1.09001 * 109.47358 * 185.32885 * 8 7 6 29 29 H 1.08995 * 109.47320 * 305.33658 * 8 7 6 30 30 H 0.96994 * 120.00728 * 180.02562 * 12 11 9 31 31 H 1.09008 * 109.46661 * 283.20254 * 17 7 6 32 32 H 1.09002 * 109.46949 * 43.19760 * 17 7 6 33 33 H 1.09002 * 109.47350 * 186.93082 * 18 17 7 34 34 H 1.08996 * 109.47323 * 306.93261 * 18 17 7 35 35 H 1.08996 * 109.47142 * 64.93329 * 20 19 18 36 36 H 1.08996 * 109.46590 * 184.93141 * 20 19 18 37 37 H 1.08995 * 109.46720 * 304.93278 * 20 19 18 38 38 H 1.09001 * 109.47072 * 95.09078 * 22 21 6 39 39 H 1.09001 * 109.47252 * 215.09163 * 22 21 6 40 40 H 1.09003 * 109.47382 * 335.08873 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2902 2.1487 1.0494 5 7 2.7018 3.3117 0.6887 6 6 2.7284 3.3888 -0.6208 7 7 3.1160 4.4858 -1.3738 8 6 1.9485 5.1762 -1.9379 9 6 1.1235 5.7624 -0.8211 10 1 1.4706 5.6951 0.1993 11 6 -0.0744 6.3844 -1.1022 12 7 -0.5462 6.3786 -2.3298 13 14 -1.0273 7.2354 0.2605 14 1 -0.6865 8.6807 0.2748 15 1 -2.4840 7.0726 0.0221 16 1 -0.6690 6.6293 1.5680 17 6 3.9384 5.4067 -0.5777 18 6 4.6844 6.3615 -1.5118 19 8 3.7464 7.2211 -2.1625 20 6 4.3300 8.0826 -3.1420 21 7 2.3024 2.1849 -1.1013 22 6 2.1624 1.7926 -2.5059 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2834 5.9748 -2.5998 29 1 1.3440 4.4661 -2.5020 30 1 -1.3888 6.8165 -2.5277 31 1 3.2971 5.9803 0.0916 32 1 4.6582 4.8361 0.0092 33 1 5.3863 6.9617 -0.9328 34 1 5.2295 5.7860 -2.2598 35 1 4.7299 7.4840 -3.9603 36 1 3.5699 8.7624 -3.5269 37 1 5.1352 8.6584 -2.6858 38 1 3.0637 1.2718 -2.8292 39 1 1.3022 1.1320 -2.6147 40 1 2.0171 2.6822 -3.1189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589230308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:20 Heat of formation + Delta-G solvation = 21.894781 kcal Electronic energy + Delta-G solvation = -21785.509417 eV Core-core repulsion = 18636.622006 eV Total energy + Delta-G solvation = -3148.887411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.78172 -39.47092 -37.68558 -35.98973 -34.75343 -34.28427 -31.00925 -30.06754 -28.56125 -27.92412 -26.94667 -25.18805 -24.34468 -23.48087 -21.45297 -21.16788 -18.82846 -17.97448 -17.54937 -17.31365 -16.95150 -16.64527 -16.13463 -15.80196 -15.42777 -15.17838 -14.93197 -14.62152 -14.16794 -13.83357 -13.46370 -13.34499 -13.23318 -12.95629 -12.77151 -12.73338 -12.61025 -12.46416 -12.27788 -12.16436 -12.05260 -11.95888 -11.68572 -11.19885 -10.89212 -10.64120 -10.31262 -10.22755 -9.13553 -8.18639 -6.26355 0.95708 1.29743 1.30919 1.42561 1.54695 1.98990 2.37133 3.03657 3.09862 3.17641 3.51621 3.83527 4.09818 4.15073 4.31915 4.33530 4.40982 4.42898 4.50671 4.58177 4.61171 4.63493 4.66272 4.69325 4.81868 4.94100 4.97577 5.12570 5.12906 5.22312 5.25414 5.33952 5.52213 5.75879 5.80835 5.93550 6.14662 6.47529 6.56830 6.84848 7.39279 7.93268 8.87204 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.008090 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.690357 B = 3460.160542 C = 4542.777455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C 0.169 3.831 4 N -0.336 5.336 5 N -0.368 5.368 6 C 0.379 3.621 7 N -0.455 5.455 8 C 0.209 3.791 9 C -0.537 4.537 10 H 0.044 0.956 11 C 0.024 3.976 12 N -0.917 5.917 13 Si 0.939 3.061 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.286 1.286 17 C 0.075 3.925 18 C 0.076 3.924 19 O -0.400 6.400 20 C 0.028 3.972 21 N -0.480 5.480 22 C 0.076 3.924 23 H 0.101 0.899 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.006 0.994 30 H 0.263 0.737 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 -9.427 -3.853 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C -0.100 4.100 4 N -0.175 5.175 5 N -0.212 5.212 6 C 0.021 3.979 7 N -0.179 5.179 8 C 0.084 3.916 9 C -0.576 4.576 10 H 0.062 0.938 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.766 3.234 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.212 1.212 17 C -0.053 4.053 18 C -0.001 4.001 19 O -0.319 6.319 20 C -0.068 4.068 21 N -0.174 5.174 22 C -0.065 4.065 23 H 0.120 0.880 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.174 -9.109 -2.911 12.580 hybrid contribution -1.153 0.923 -0.106 1.481 sum 7.021 -8.186 -3.017 11.198 Atomic orbital electron populations 1.21733 0.93582 1.03678 1.01197 1.20162 0.96415 0.83552 1.06181 1.25559 1.03719 0.98924 0.81779 1.73713 1.17823 0.99653 1.26301 1.74471 1.24037 1.13475 1.09182 1.22767 0.98035 0.88165 0.88911 1.59513 1.21443 1.06130 1.30838 1.19824 0.84429 0.93014 0.94334 1.21785 1.05358 1.36540 0.93904 0.93812 1.25446 0.98026 0.96888 0.97220 1.70000 1.21000 1.44843 1.19931 0.85836 0.78187 0.79539 0.79853 1.19509 1.20401 1.21164 1.21993 0.95571 0.93047 0.94666 1.22515 0.90902 0.91359 0.95307 1.88219 1.34839 1.53430 1.55422 1.22808 0.99012 0.93675 0.91355 1.46218 1.50800 1.10432 1.09957 1.22265 1.05195 1.02846 0.76204 0.88033 0.94378 0.93721 0.86874 0.87366 0.91478 0.97632 0.92822 0.94075 0.89587 0.90569 0.91697 0.93333 0.90575 0.92551 0.87547 0.87455 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.90 71.98 0.71 -2.46 16 2 C -0.02 -0.53 6.24 29.85 0.19 -0.34 16 3 C 0.17 6.06 7.32 137.64 1.01 7.07 16 4 N -0.34 -15.11 12.18 -49.54 -0.60 -15.71 16 5 N -0.37 -18.15 11.29 -58.01 -0.65 -18.80 16 6 C 0.38 17.15 6.01 260.11 1.56 18.71 16 7 N -0.45 -20.18 4.67 -710.36 -3.31 -23.49 16 8 C 0.21 10.79 4.56 85.56 0.39 11.18 16 9 C -0.54 -31.21 7.69 25.60 0.20 -31.01 16 10 H 0.04 2.72 6.29 -2.91 -0.02 2.70 16 11 C 0.02 1.38 5.45 84.65 0.46 1.84 16 12 N -0.92 -54.49 13.29 21.44 0.29 -54.20 16 13 Si 0.94 47.40 29.54 68.60 2.03 49.42 16 14 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 17 C 0.07 3.08 4.83 86.30 0.42 3.49 16 18 C 0.08 2.53 6.23 71.98 0.45 2.98 16 19 O -0.40 -15.71 7.73 -148.98 -1.15 -16.86 16 20 C 0.03 0.79 11.01 113.37 1.25 2.04 16 21 N -0.48 -17.87 3.21 -538.19 -1.73 -19.60 16 22 C 0.08 2.05 10.84 127.77 1.39 3.43 16 23 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.11 1.74 7.98 -2.39 -0.02 1.72 16 27 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 3.63 5.47 -2.39 -0.01 3.61 16 29 H 0.01 0.31 6.65 -2.39 -0.02 0.30 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.04 2.00 5.98 -2.38 -0.01 1.98 16 32 H 0.09 3.29 7.81 -2.39 -0.02 3.27 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.11 2.24 8.06 -2.39 -0.02 2.22 16 40 H 0.08 2.42 6.54 -2.39 -0.02 2.40 16 Total: -1.00 -76.97 327.79 3.90 -73.07 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.02 Total: 9.23 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 8.02 Total: 16.94 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -6.01 Total: -131.81 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.15 Total: -16.86 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -76.97 3.90 -73.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589230308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.965 kcal (2) G-P(sol) polarization free energy of solvation -76.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds