Wall clock time and date at job start Mon Mar 30 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47140 * 2 1 4 4 C 1.36734 * 127.13758 * 90.80830 * 3 2 1 5 5 C 1.50695 * 126.34941 * 359.97438 * 4 3 2 6 6 O 1.42905 * 109.47036 * 89.99721 * 5 4 3 7 7 C 1.42899 * 114.00062 * 180.02562 * 6 5 4 8 8 N 1.30296 * 107.30390 * 180.24018 * 4 3 2 9 9 N 1.28529 * 110.05125 * 359.56412 * 8 4 3 10 10 C 1.31216 * 109.86358 * 0.44387 * 9 8 4 11 11 N 1.38579 * 126.47248 * 179.69464 * 10 9 8 12 12 C 1.46900 * 111.00248 * 306.63752 * 11 10 9 13 13 C 1.46896 * 110.99862 * 70.59859 * 11 10 9 14 14 H 1.08999 * 109.47263 * 54.99875 * 13 11 10 15 15 C 1.53003 * 109.46993 * 294.99547 * 13 11 10 16 16 C 1.50703 * 109.46902 * 174.99719 * 13 11 10 17 17 H 1.07999 * 120.00057 * 359.97438 * 16 13 11 18 18 C 1.37882 * 120.00024 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99611 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00196 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47443 * 89.99626 * 20 18 16 22 22 H 1.48500 * 109.47317 * 209.99897 * 20 18 16 23 23 H 1.48502 * 109.46896 * 329.99728 * 20 18 16 24 24 H 1.09000 * 109.47483 * 55.53551 * 1 2 3 25 25 H 1.08999 * 109.46915 * 175.54141 * 1 2 3 26 26 H 1.09004 * 109.46667 * 295.53704 * 1 2 3 27 27 H 1.08997 * 109.46905 * 239.99941 * 2 1 3 28 28 H 1.08996 * 109.47325 * 120.00129 * 2 1 3 29 29 H 1.08993 * 109.47627 * 209.99696 * 5 4 3 30 30 H 1.09005 * 109.47062 * 330.00063 * 5 4 3 31 31 H 1.09009 * 109.46856 * 300.00317 * 7 6 5 32 32 H 1.08996 * 109.47253 * 59.99981 * 7 6 5 33 33 H 1.08998 * 109.47313 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.46706 * 54.87461 * 12 11 10 35 35 H 1.08999 * 109.47002 * 174.86618 * 12 11 10 36 36 H 1.08998 * 109.47333 * 294.87387 * 12 11 10 37 37 H 1.09000 * 109.46851 * 180.02562 * 15 13 11 38 38 H 1.08997 * 109.46670 * 300.00063 * 15 13 11 39 39 H 1.08997 * 109.47027 * 60.00570 * 15 13 11 40 40 H 0.97005 * 119.99635 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3080 2.1544 1.0899 5 6 2.1840 1.7440 2.5346 6 8 3.4147 1.1646 2.9726 7 6 3.4036 0.7385 4.3365 8 7 2.7058 3.3138 0.6480 9 7 2.6959 3.3225 -0.6373 10 6 2.2790 2.1628 -1.0878 11 7 2.1304 1.8006 -2.4171 12 6 1.2951 2.7711 -3.1371 13 6 3.4373 1.6445 -3.0694 14 1 4.0424 0.9345 -2.5056 15 6 4.1494 2.9980 -3.1150 16 6 3.2402 1.1330 -4.4732 17 1 2.2438 0.9425 -4.8435 18 6 4.3321 0.9072 -5.2843 19 7 5.5455 1.1388 -4.8331 20 14 4.0878 0.2739 -7.0246 21 1 3.9471 1.4231 -7.9545 22 1 5.2613 -0.5444 -7.4229 23 1 2.8607 -0.5607 -7.0798 24 1 -0.3634 0.5815 -0.8473 25 1 -0.3633 -1.0246 -0.0799 26 1 -0.3633 0.4430 0.9273 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9578 2.6195 3.1430 30 1 1.3817 1.0132 2.6371 31 1 3.2024 1.5931 4.9825 32 1 2.6267 -0.0132 4.4760 33 1 4.3733 0.3110 4.5915 34 1 1.7133 3.7704 -3.0164 35 1 1.2695 2.5135 -4.1959 36 1 0.2830 2.7495 -2.7332 37 1 5.1189 2.8823 -3.5994 38 1 3.5443 3.7079 -3.6789 39 1 4.2920 3.3679 -2.0997 40 1 6.3137 0.9803 -5.4039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589637652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:06 Heat of formation + Delta-G solvation = 52.930949 kcal Electronic energy + Delta-G solvation = -21544.424419 eV Core-core repulsion = 18396.882838 eV Total energy + Delta-G solvation = -3147.541581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51725 -38.02096 -37.13414 -35.35994 -32.87178 -30.87618 -30.27566 -28.72132 -27.37975 -25.80026 -25.22683 -24.99887 -23.80244 -21.41833 -20.53021 -19.41748 -16.94244 -16.65562 -16.32331 -15.96875 -15.61313 -15.42037 -15.12561 -14.52120 -14.17829 -13.61325 -13.24027 -12.97796 -12.76264 -12.63414 -12.29923 -12.17739 -11.63094 -11.49537 -11.32085 -11.25121 -11.08112 -10.93008 -10.76450 -10.53468 -10.20166 -10.13957 -9.99892 -9.82479 -9.69535 -8.89554 -8.54857 -8.44068 -7.69955 -6.06551 -4.13190 2.02913 2.67583 3.20325 3.28052 3.34887 3.37602 3.87414 4.33676 4.58084 4.63865 4.72068 4.85371 5.04525 5.09672 5.13480 5.20139 5.25348 5.31167 5.47717 5.56782 5.71193 5.81404 5.95886 6.07427 6.19620 6.38835 6.50101 6.62566 6.84901 6.88559 7.04127 7.08863 7.18853 7.53748 7.65911 7.76012 7.93272 8.26754 8.46660 8.89974 9.23192 9.51528 11.00168 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.005117 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.053981 B = 5470.905145 C = 5576.305979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.460 5.460 4 C 0.149 3.851 5 C 0.160 3.840 6 O -0.384 6.384 7 C 0.032 3.968 8 N -0.273 5.273 9 N -0.314 5.314 10 C 0.385 3.615 11 N -0.470 5.470 12 C 0.045 3.955 13 C 0.224 3.776 14 H 0.036 0.964 15 C -0.173 4.173 16 C -0.508 4.508 17 H 0.066 0.934 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -3.454 13.817 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.154 5.154 4 C -0.118 4.118 5 C 0.081 3.919 6 O -0.301 6.301 7 C -0.064 4.064 8 N -0.116 5.116 9 N -0.158 5.158 10 C 0.030 3.970 11 N -0.196 5.196 12 C -0.102 4.102 13 C 0.120 3.880 14 H 0.054 0.946 15 C -0.232 4.232 16 C -0.547 4.547 17 H 0.084 0.916 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.791 -2.574 13.632 16.423 hybrid contribution -0.238 -1.053 -0.754 1.317 sum -9.028 -3.627 12.877 16.140 Atomic orbital electron populations 1.22099 0.94123 1.03143 1.02698 1.21802 0.95406 0.79261 1.05072 1.46379 1.49355 1.13627 1.06053 1.23932 1.07427 0.90005 0.90446 1.20383 0.86985 0.98042 0.86443 1.88030 1.34177 1.80235 1.27689 1.22775 1.02729 0.98595 0.82325 1.73920 1.15899 1.17499 1.04272 1.74775 1.19852 1.19053 1.02159 1.22937 0.97536 0.86868 0.89702 1.59439 1.20314 1.45747 0.94142 1.22246 0.94256 0.93869 0.99862 1.19413 0.80808 0.94097 0.93724 0.94590 1.22436 1.03710 0.97743 0.99323 1.20995 0.93346 1.44114 0.96221 0.91578 1.24918 0.95024 0.95430 0.98631 1.69918 0.97908 1.48203 1.36577 0.86456 0.77694 0.78832 0.84177 1.20617 1.21251 1.19804 0.91258 0.90509 0.92691 0.87506 0.89443 0.89851 0.91699 0.93683 0.93974 0.89304 0.94066 0.89059 0.93798 0.89531 0.94917 0.94812 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.24 37.16 0.38 -1.38 16 2 C 0.11 1.47 6.62 -4.04 -0.03 1.44 16 3 N -0.46 -8.23 2.81 -114.09 -0.32 -8.55 16 4 C 0.15 2.62 7.70 -154.02 -1.19 1.44 16 5 C 0.16 2.01 6.13 36.00 0.22 2.23 16 6 O -0.38 -5.22 10.69 -35.23 -0.38 -5.59 16 7 C 0.03 0.28 11.01 101.05 1.11 1.39 16 8 N -0.27 -5.77 12.18 32.99 0.40 -5.37 16 9 N -0.31 -7.19 9.73 30.31 0.29 -6.90 16 10 C 0.39 8.24 6.21 -318.88 -1.98 6.26 16 11 N -0.47 -10.34 4.77 -176.08 -0.84 -11.19 16 12 C 0.05 0.91 8.66 60.06 0.52 1.43 16 13 C 0.22 5.74 2.32 -68.86 -0.16 5.58 16 14 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 15 C -0.17 -4.50 8.20 37.16 0.30 -4.20 16 16 C -0.51 -13.50 7.81 -34.44 -0.27 -13.77 16 17 H 0.07 1.71 6.81 -52.49 -0.36 1.35 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 20 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.09 0.99 7.83 -51.93 -0.41 0.58 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 31 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.86 6.54 -51.93 -0.34 0.52 16 35 H 0.09 1.85 6.30 -51.93 -0.33 1.52 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 38 H 0.03 0.81 6.59 -51.93 -0.34 0.47 16 39 H 0.03 0.88 5.95 -51.93 -0.31 0.57 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -32.34 326.22 -7.66 -40.00 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.17 Total: -0.48 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.18 Total: 2.00 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.16 Total: -56.64 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.38 Total: -5.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.34 -7.66 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589637652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.931 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds