Wall clock time and date at job start Mon Mar 30 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47140 * 2 1 4 4 C 1.36734 * 127.13758 * 90.80830 * 3 2 1 5 5 C 1.50695 * 126.34941 * 359.97438 * 4 3 2 6 6 O 1.42905 * 109.47036 * 89.99721 * 5 4 3 7 7 C 1.42899 * 114.00062 * 180.02562 * 6 5 4 8 8 N 1.30296 * 107.30390 * 180.24018 * 4 3 2 9 9 N 1.28529 * 110.05125 * 359.56412 * 8 4 3 10 10 C 1.31216 * 109.86358 * 0.44387 * 9 8 4 11 11 N 1.38579 * 126.47248 * 179.69464 * 10 9 8 12 12 C 1.46900 * 111.00248 * 306.63752 * 11 10 9 13 13 C 1.46896 * 110.99862 * 70.59859 * 11 10 9 14 14 H 1.08999 * 109.47263 * 54.99875 * 13 11 10 15 15 C 1.53003 * 109.46993 * 294.99547 * 13 11 10 16 16 C 1.50703 * 109.46902 * 174.99719 * 13 11 10 17 17 H 1.07999 * 120.00057 * 359.97438 * 16 13 11 18 18 C 1.37882 * 120.00024 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99611 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00196 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47443 * 89.99626 * 20 18 16 22 22 H 1.48500 * 109.47317 * 209.99897 * 20 18 16 23 23 H 1.48502 * 109.46896 * 329.99728 * 20 18 16 24 24 H 1.09000 * 109.47483 * 55.53551 * 1 2 3 25 25 H 1.08999 * 109.46915 * 175.54141 * 1 2 3 26 26 H 1.09004 * 109.46667 * 295.53704 * 1 2 3 27 27 H 1.08997 * 109.46905 * 239.99941 * 2 1 3 28 28 H 1.08996 * 109.47325 * 120.00129 * 2 1 3 29 29 H 1.08993 * 109.47627 * 209.99696 * 5 4 3 30 30 H 1.09005 * 109.47062 * 330.00063 * 5 4 3 31 31 H 1.09009 * 109.46856 * 300.00317 * 7 6 5 32 32 H 1.08996 * 109.47253 * 59.99981 * 7 6 5 33 33 H 1.08998 * 109.47313 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.46706 * 54.87461 * 12 11 10 35 35 H 1.08999 * 109.47002 * 174.86618 * 12 11 10 36 36 H 1.08998 * 109.47333 * 294.87387 * 12 11 10 37 37 H 1.09000 * 109.46851 * 180.02562 * 15 13 11 38 38 H 1.08997 * 109.46670 * 300.00063 * 15 13 11 39 39 H 1.08997 * 109.47027 * 60.00570 * 15 13 11 40 40 H 0.97005 * 119.99635 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3080 2.1544 1.0899 5 6 2.1840 1.7440 2.5346 6 8 3.4147 1.1646 2.9726 7 6 3.4036 0.7385 4.3365 8 7 2.7058 3.3138 0.6480 9 7 2.6959 3.3225 -0.6373 10 6 2.2790 2.1628 -1.0878 11 7 2.1304 1.8006 -2.4171 12 6 1.2951 2.7711 -3.1371 13 6 3.4373 1.6445 -3.0694 14 1 4.0424 0.9345 -2.5056 15 6 4.1494 2.9980 -3.1150 16 6 3.2402 1.1330 -4.4732 17 1 2.2438 0.9425 -4.8435 18 6 4.3321 0.9072 -5.2843 19 7 5.5455 1.1388 -4.8331 20 14 4.0878 0.2739 -7.0246 21 1 3.9471 1.4231 -7.9545 22 1 5.2613 -0.5444 -7.4229 23 1 2.8607 -0.5607 -7.0798 24 1 -0.3634 0.5815 -0.8473 25 1 -0.3633 -1.0246 -0.0799 26 1 -0.3633 0.4430 0.9273 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9578 2.6195 3.1430 30 1 1.3817 1.0132 2.6371 31 1 3.2024 1.5931 4.9825 32 1 2.6267 -0.0132 4.4760 33 1 4.3733 0.3110 4.5915 34 1 1.7133 3.7704 -3.0164 35 1 1.2695 2.5135 -4.1959 36 1 0.2830 2.7495 -2.7332 37 1 5.1189 2.8823 -3.5994 38 1 3.5443 3.7079 -3.6789 39 1 4.2920 3.3679 -2.0997 40 1 6.3137 0.9803 -5.4039 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589637652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:06 Heat of formation + Delta-G solvation = 32.365768 kcal Electronic energy + Delta-G solvation = -21545.316192 eV Core-core repulsion = 18396.882838 eV Total energy + Delta-G solvation = -3148.433355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.01575 -39.18801 -38.69909 -36.64324 -34.87041 -32.20863 -31.54418 -30.59705 -28.52493 -27.28329 -27.04177 -26.39995 -24.94212 -23.18340 -21.89183 -21.08154 -18.39962 -18.20408 -17.67266 -17.33948 -16.99604 -16.65400 -16.43459 -16.23895 -15.40304 -15.14344 -14.88229 -14.33068 -14.04561 -13.79849 -13.53843 -13.34154 -13.20811 -13.07012 -12.85125 -12.71593 -12.59734 -12.39494 -12.33254 -12.26372 -12.08116 -12.03507 -11.56281 -11.12436 -10.93189 -10.73985 -10.53802 -10.12693 -9.48636 -8.14249 -6.28503 0.61342 1.32313 1.46433 1.46820 1.57689 1.68479 2.42402 2.83491 3.05913 3.16428 3.51438 3.63821 3.90829 4.06985 4.11156 4.23647 4.36271 4.47569 4.54161 4.58764 4.63026 4.67052 4.71486 4.79478 4.85196 4.90180 5.00184 5.04031 5.09070 5.14666 5.21819 5.38339 5.60272 5.61984 5.81458 5.98695 6.10756 6.18889 6.60534 6.81306 7.40794 7.69237 8.92908 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025494 B = 0.005117 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.053981 B = 5470.905145 C = 5576.305979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 N -0.456 5.456 4 C 0.168 3.832 5 C 0.161 3.839 6 O -0.419 6.419 7 C 0.027 3.973 8 N -0.315 5.315 9 N -0.347 5.347 10 C 0.360 3.640 11 N -0.463 5.463 12 C 0.050 3.950 13 C 0.235 3.765 14 H -0.004 1.004 15 C -0.155 4.155 16 C -0.517 4.517 17 H 0.074 0.926 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.261 1.261 24 H 0.046 0.954 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.034 0.966 39 H 0.025 0.975 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.424 -4.958 14.905 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 N -0.149 5.149 4 C -0.101 4.101 5 C 0.082 3.918 6 O -0.338 6.338 7 C -0.069 4.069 8 N -0.157 5.157 9 N -0.192 5.192 10 C 0.003 3.997 11 N -0.189 5.189 12 C -0.097 4.097 13 C 0.129 3.871 14 H 0.013 0.987 15 C -0.214 4.214 16 C -0.555 4.555 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.185 1.185 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.843 -4.090 14.746 18.755 hybrid contribution 0.398 -0.612 -0.917 1.172 sum -10.445 -4.701 13.829 17.957 Atomic orbital electron populations 1.22059 0.91509 1.04765 1.02695 1.22171 0.97506 0.77022 1.05535 1.46658 1.48505 1.14728 1.05048 1.24980 1.03841 0.88793 0.92448 1.20694 0.87895 1.00052 0.83119 1.87963 1.34761 1.80640 1.30460 1.23021 1.04018 0.99835 0.80016 1.73830 1.18375 1.19901 1.03615 1.74621 1.20674 1.20434 1.03433 1.22879 0.99309 0.87582 0.89943 1.59317 1.18383 1.46473 0.94731 1.22245 0.95202 0.92568 0.99700 1.19056 0.82152 0.92473 0.93385 0.98659 1.22230 1.02418 0.98333 0.98436 1.21253 0.93737 1.43951 0.96569 0.90824 1.25794 0.94595 0.95494 1.02787 1.70070 0.98782 1.49197 1.38119 0.85364 0.77863 0.78321 0.78928 1.20100 1.21279 1.18496 0.93456 0.87651 0.90814 0.89540 0.86510 0.88110 0.87699 0.92291 0.91482 0.88881 0.95491 0.89329 0.91013 0.92069 0.94663 0.95572 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.24 71.98 0.74 -2.11 16 2 C 0.10 2.51 6.62 86.38 0.57 3.08 16 3 N -0.46 -15.98 2.81 -514.86 -1.45 -17.42 16 4 C 0.17 5.73 7.70 137.64 1.06 6.79 16 5 C 0.16 3.55 6.13 71.23 0.44 3.98 16 6 O -0.42 -10.41 10.69 -148.98 -1.59 -12.00 16 7 C 0.03 0.37 11.01 113.37 1.25 1.62 16 8 N -0.31 -13.45 12.18 -49.54 -0.60 -14.06 16 9 N -0.35 -16.35 9.73 -58.01 -0.56 -16.91 16 10 C 0.36 15.65 6.21 260.11 1.61 17.26 16 11 N -0.46 -20.75 4.77 -711.00 -3.39 -24.15 16 12 C 0.05 2.01 8.66 127.69 1.11 3.12 16 13 C 0.24 12.48 2.32 44.17 0.10 12.58 16 14 H 0.00 -0.27 8.11 -2.39 -0.02 -0.29 16 15 C -0.15 -8.42 8.20 71.98 0.59 -7.83 16 16 C -0.52 -27.79 7.81 25.60 0.20 -27.59 16 17 H 0.07 3.78 6.81 -2.91 -0.02 3.76 16 18 C 0.01 0.67 5.30 84.66 0.45 1.12 16 19 N -0.92 -53.84 11.32 21.45 0.24 -53.59 16 20 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.12 2.27 7.83 -2.39 -0.02 2.25 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.47 7.89 -2.38 -0.02 1.45 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 1.14 6.54 -2.38 -0.02 1.13 16 35 H 0.09 3.57 6.30 -2.39 -0.02 3.55 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 3.62 6.07 -2.39 -0.01 3.60 16 38 H 0.03 1.83 6.59 -2.39 -0.02 1.81 16 39 H 0.03 1.42 5.95 -2.39 -0.01 1.40 16 40 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -73.11 326.22 3.81 -69.31 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.02 Total: 12.11 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 8.11 Total: 12.04 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.76 Total: -126.13 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.59 Total: -12.00 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.11 3.81 -69.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589637652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.672 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds