Wall clock time and date at job start Mon Mar 30 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47280 * 2 1 4 4 C 1.36746 * 127.13392 * 264.20796 * 3 2 1 5 5 C 1.50701 * 126.34576 * 359.96258 * 4 3 2 6 6 N 1.30292 * 107.29991 * 180.22099 * 4 3 2 7 7 N 1.28526 * 110.05945 * 359.77860 * 6 4 3 8 8 C 1.31222 * 109.85839 * 359.97438 * 7 6 4 9 9 N 1.38575 * 126.47224 * 179.97438 * 8 7 6 10 10 C 1.46905 * 111.00166 * 291.35757 * 9 8 7 11 11 C 1.50699 * 109.47151 * 67.29305 * 10 9 8 12 12 H 1.08004 * 120.00056 * 1.44201 * 11 10 9 13 13 C 1.37877 * 119.99711 * 181.44163 * 11 10 9 14 14 N 1.31514 * 120.00157 * 5.30412 * 13 11 10 15 15 Si 1.86807 * 119.99791 * 185.30112 * 13 11 10 16 16 H 1.48501 * 109.46865 * 64.99919 * 15 13 11 17 17 H 1.48499 * 109.46869 * 185.00057 * 15 13 11 18 18 H 1.48493 * 109.47234 * 304.99931 * 15 13 11 19 19 C 1.46902 * 111.00238 * 55.31033 * 9 8 7 20 20 C 1.52995 * 109.47486 * 162.94436 * 19 9 8 21 21 O 1.42899 * 109.47157 * 68.30143 * 20 19 9 22 22 C 1.42896 * 114.00289 * 184.44810 * 21 20 19 23 23 H 1.08997 * 109.47214 * 60.00524 * 1 2 3 24 24 H 1.08997 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47103 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.47652 * 239.99579 * 2 1 3 27 27 H 1.09001 * 109.47414 * 119.99920 * 2 1 3 28 28 H 1.08993 * 109.46912 * 270.28404 * 5 4 3 29 29 H 1.09000 * 109.47154 * 30.28536 * 5 4 3 30 30 H 1.09000 * 109.46419 * 150.28668 * 5 4 3 31 31 H 1.08998 * 109.46913 * 187.29913 * 10 9 8 32 32 H 1.09000 * 109.46840 * 307.29476 * 10 9 8 33 33 H 0.97003 * 120.00082 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.46815 * 42.94145 * 19 9 8 35 35 H 1.09006 * 109.46631 * 282.94615 * 19 9 8 36 36 H 1.09000 * 109.47422 * 188.30384 * 20 19 9 37 37 H 1.08996 * 109.46875 * 308.30454 * 20 19 9 38 38 H 1.09006 * 109.46823 * 304.83374 * 22 21 20 39 39 H 1.09001 * 109.47429 * 64.83513 * 22 21 20 40 40 H 1.09001 * 109.47329 * 184.83729 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3973 2.1228 -1.0846 5 6 2.3926 1.6699 -2.5219 6 7 2.7683 3.2916 -0.6443 7 7 2.6461 3.3402 0.6342 8 6 2.1863 2.1956 1.0819 9 7 1.9265 1.8728 2.4042 10 6 3.1721 1.7763 3.1771 11 6 3.8026 3.1407 3.2861 12 1 3.3139 3.9980 2.8472 13 6 5.0032 3.2945 3.9463 14 7 5.6499 2.2386 4.3896 15 14 5.7115 5.0027 4.2108 16 1 4.8154 5.7767 5.1070 17 1 7.0558 4.8904 4.8317 18 1 5.8264 5.6988 2.9042 19 6 1.0041 2.8416 3.0113 20 6 0.4105 2.2483 4.2905 21 8 1.4340 2.1310 5.2808 22 6 1.0068 1.4926 6.4857 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.3537 1.2159 -2.7629 29 1 1.5980 0.9386 -2.6699 30 1 2.2227 2.5278 -3.1725 31 1 2.9520 1.3968 4.1749 32 1 3.8603 1.0972 2.6737 33 1 6.4948 2.3467 4.8537 34 1 0.2015 3.0681 2.3094 35 1 1.5452 3.7567 3.2522 36 1 -0.3803 2.9007 4.6608 37 1 -0.0023 1.2625 4.0763 38 1 0.1376 2.0153 6.8853 39 1 0.7421 0.4566 6.2738 40 1 1.8145 1.5190 7.2170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589638495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:11 Heat of formation + Delta-G solvation = 49.680350 kcal Electronic energy + Delta-G solvation = -21875.279662 eV Core-core repulsion = 18727.597124 eV Total energy + Delta-G solvation = -3147.682538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24674 -37.86323 -36.03222 -35.25951 -32.33071 -31.48389 -30.25421 -29.16414 -27.08450 -26.13576 -25.40286 -23.78545 -22.70030 -21.80582 -20.16656 -19.52042 -16.89428 -16.24188 -16.08221 -15.71831 -15.40293 -14.87351 -14.46330 -14.32887 -14.16621 -13.45575 -13.34895 -13.09927 -12.71091 -12.59036 -12.35709 -12.11539 -11.73448 -11.51724 -11.30393 -11.11486 -11.00151 -10.83352 -10.72263 -10.58842 -10.25048 -9.97133 -9.81938 -9.53645 -9.16822 -8.99814 -8.20114 -8.14396 -7.63496 -5.82604 -3.81592 2.39750 2.86083 3.49821 3.50820 3.59243 3.63550 4.39676 4.63997 4.65972 4.77919 4.79088 5.07158 5.19723 5.30722 5.52916 5.55372 5.56686 5.60113 5.70052 5.72511 5.75619 5.82941 5.84013 5.91103 6.02232 6.09099 6.15583 6.22070 6.38501 6.69747 6.75952 7.11538 7.45998 7.72201 7.77321 7.82196 8.16088 8.33440 8.44693 9.23246 9.54596 9.81187 11.26588 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.008248 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.704571 B = 3393.835458 C = 4641.925774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.475 5.475 4 C 0.147 3.853 5 C -0.056 4.056 6 N -0.297 5.297 7 N -0.290 5.290 8 C 0.381 3.619 9 N -0.473 5.473 10 C 0.194 3.806 11 C -0.521 4.521 12 H 0.073 0.927 13 C 0.065 3.935 14 N -0.901 5.901 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.292 1.292 18 H -0.276 1.276 19 C 0.070 3.930 20 C 0.073 3.927 21 O -0.352 6.352 22 C 0.031 3.969 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.020 0.980 33 H 0.258 0.742 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.029 0.971 39 H 0.033 0.967 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 -7.103 -6.401 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.170 5.170 4 C -0.120 4.120 5 C -0.115 4.115 6 N -0.138 5.138 7 N -0.132 5.132 8 C 0.026 3.974 9 N -0.200 5.200 10 C 0.071 3.929 11 C -0.560 4.560 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.542 5.542 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.202 1.202 19 C -0.058 4.058 20 C -0.005 4.005 21 O -0.270 6.270 22 C -0.066 4.066 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.154 -6.146 -6.312 15.011 hybrid contribution 0.245 0.040 0.380 0.454 sum -11.909 -6.106 -5.932 14.639 Atomic orbital electron populations 1.22086 0.94394 1.02626 1.02974 1.21659 0.95330 0.79831 1.04288 1.46401 1.50434 1.13358 1.06822 1.24579 1.05122 0.90606 0.91684 1.20045 1.02696 1.02066 0.86688 1.73988 1.18424 1.16665 1.04761 1.74876 1.16897 1.19624 1.01837 1.22625 0.98980 0.86699 0.89121 1.59596 1.18589 1.46200 0.95573 1.20122 0.81978 0.97374 0.93439 1.21678 1.05844 0.94513 1.33932 0.90903 1.24814 0.96648 0.96293 0.95844 1.69948 1.15856 1.28581 1.39782 0.86709 0.77748 0.85510 0.78421 1.20431 1.21757 1.20154 1.22021 0.94696 0.95997 0.93048 1.22434 0.90143 0.98956 0.88945 1.88339 1.34658 1.79694 1.24350 1.22654 0.99741 0.95785 0.88394 0.92530 0.90901 0.91363 0.89646 0.88459 0.90393 0.91196 0.89312 0.90959 0.96229 0.93301 0.91814 0.90083 0.93743 0.93631 0.95219 0.94889 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.43 6.69 -4.04 -0.03 1.41 16 3 N -0.47 -8.43 2.81 -114.09 -0.32 -8.75 16 4 C 0.15 2.61 8.07 -154.01 -1.24 1.36 16 5 C -0.06 -0.64 10.04 36.01 0.36 -0.28 16 6 N -0.30 -6.64 12.18 32.99 0.40 -6.24 16 7 N -0.29 -7.18 10.42 30.31 0.32 -6.86 16 8 C 0.38 8.37 6.14 -318.88 -1.96 6.41 16 9 N -0.47 -10.21 4.69 -175.88 -0.83 -11.04 16 10 C 0.19 5.08 4.65 -4.97 -0.02 5.06 16 11 C -0.52 -15.02 7.30 -34.44 -0.25 -15.27 16 12 H 0.07 2.17 5.46 -52.48 -0.29 1.88 16 13 C 0.06 1.93 5.45 -17.82 -0.10 1.83 16 14 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 15 Si 0.89 23.39 29.54 -169.99 -5.02 18.37 16 16 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 19 C 0.07 1.38 5.18 -3.83 -0.02 1.36 16 20 C 0.07 1.23 6.21 37.16 0.23 1.46 16 21 O -0.35 -7.02 7.86 -35.23 -0.28 -7.30 16 22 C 0.03 0.48 11.01 101.05 1.11 1.59 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.84 7.60 -51.93 -0.39 0.45 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.60 7.77 -51.93 -0.40 0.20 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.96 5.67 -51.93 -0.29 1.67 16 32 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.06 1.13 7.95 -51.93 -0.41 0.71 16 35 H 0.08 1.87 5.89 -51.93 -0.31 1.56 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -35.57 329.38 -7.86 -43.43 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.30 Total: -3.32 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.53 Total: 3.62 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.31 Total: -59.76 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.28 Total: -7.30 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.57 -7.86 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589638495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.112 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds