Wall clock time and date at job start Mon Mar 30 2020 00:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47280 * 2 1 4 4 C 1.36746 * 127.13392 * 264.20796 * 3 2 1 5 5 C 1.50701 * 126.34576 * 359.96258 * 4 3 2 6 6 N 1.30292 * 107.29991 * 180.22099 * 4 3 2 7 7 N 1.28526 * 110.05945 * 359.77860 * 6 4 3 8 8 C 1.31222 * 109.85839 * 359.97438 * 7 6 4 9 9 N 1.38575 * 126.47224 * 179.97438 * 8 7 6 10 10 C 1.46905 * 111.00166 * 291.35757 * 9 8 7 11 11 C 1.50699 * 109.47151 * 67.29305 * 10 9 8 12 12 H 1.08004 * 120.00056 * 1.44201 * 11 10 9 13 13 C 1.37877 * 119.99711 * 181.44163 * 11 10 9 14 14 N 1.31514 * 120.00157 * 5.30412 * 13 11 10 15 15 Si 1.86807 * 119.99791 * 185.30112 * 13 11 10 16 16 H 1.48501 * 109.46865 * 64.99919 * 15 13 11 17 17 H 1.48499 * 109.46869 * 185.00057 * 15 13 11 18 18 H 1.48493 * 109.47234 * 304.99931 * 15 13 11 19 19 C 1.46902 * 111.00238 * 55.31033 * 9 8 7 20 20 C 1.52995 * 109.47486 * 162.94436 * 19 9 8 21 21 O 1.42899 * 109.47157 * 68.30143 * 20 19 9 22 22 C 1.42896 * 114.00289 * 184.44810 * 21 20 19 23 23 H 1.08997 * 109.47214 * 60.00524 * 1 2 3 24 24 H 1.08997 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47103 * 300.00204 * 1 2 3 26 26 H 1.08997 * 109.47652 * 239.99579 * 2 1 3 27 27 H 1.09001 * 109.47414 * 119.99920 * 2 1 3 28 28 H 1.08993 * 109.46912 * 270.28404 * 5 4 3 29 29 H 1.09000 * 109.47154 * 30.28536 * 5 4 3 30 30 H 1.09000 * 109.46419 * 150.28668 * 5 4 3 31 31 H 1.08998 * 109.46913 * 187.29913 * 10 9 8 32 32 H 1.09000 * 109.46840 * 307.29476 * 10 9 8 33 33 H 0.97003 * 120.00082 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.46815 * 42.94145 * 19 9 8 35 35 H 1.09006 * 109.46631 * 282.94615 * 19 9 8 36 36 H 1.09000 * 109.47422 * 188.30384 * 20 19 9 37 37 H 1.08996 * 109.46875 * 308.30454 * 20 19 9 38 38 H 1.09006 * 109.46823 * 304.83374 * 22 21 20 39 39 H 1.09001 * 109.47429 * 64.83513 * 22 21 20 40 40 H 1.09001 * 109.47329 * 184.83729 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3973 2.1228 -1.0846 5 6 2.3926 1.6699 -2.5219 6 7 2.7683 3.2916 -0.6443 7 7 2.6461 3.3402 0.6342 8 6 2.1863 2.1956 1.0819 9 7 1.9265 1.8728 2.4042 10 6 3.1721 1.7763 3.1771 11 6 3.8026 3.1407 3.2861 12 1 3.3139 3.9980 2.8472 13 6 5.0032 3.2945 3.9463 14 7 5.6499 2.2386 4.3896 15 14 5.7115 5.0027 4.2108 16 1 4.8154 5.7767 5.1070 17 1 7.0558 4.8904 4.8317 18 1 5.8264 5.6988 2.9042 19 6 1.0041 2.8416 3.0113 20 6 0.4105 2.2483 4.2905 21 8 1.4340 2.1310 5.2808 22 6 1.0068 1.4926 6.4857 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.3537 1.2159 -2.7629 29 1 1.5980 0.9386 -2.6699 30 1 2.2227 2.5278 -3.1725 31 1 2.9520 1.3968 4.1749 32 1 3.8603 1.0972 2.6737 33 1 6.4948 2.3467 4.8537 34 1 0.2015 3.0681 2.3094 35 1 1.5452 3.7567 3.2522 36 1 -0.3803 2.9007 4.6608 37 1 -0.0023 1.2625 4.0763 38 1 0.1376 2.0153 6.8853 39 1 0.7421 0.4566 6.2738 40 1 1.8145 1.5190 7.2170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589638495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:10 Heat of formation + Delta-G solvation = 25.973841 kcal Electronic energy + Delta-G solvation = -21876.307654 eV Core-core repulsion = 18727.597124 eV Total energy + Delta-G solvation = -3148.710529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.77278 -39.40984 -37.61944 -36.53231 -34.52989 -32.76108 -31.45143 -30.68370 -28.83930 -27.62648 -26.90817 -25.01001 -24.48810 -23.37023 -21.51904 -21.14265 -18.70275 -17.92308 -17.54721 -17.31189 -16.85333 -16.57469 -16.06740 -15.68777 -15.48739 -15.08670 -14.53937 -14.45078 -14.05481 -13.78503 -13.51736 -13.28322 -13.25379 -12.99306 -12.91482 -12.71331 -12.61099 -12.48397 -12.28206 -12.20493 -12.05268 -11.83381 -11.66944 -11.04532 -10.89034 -10.56996 -10.25046 -9.79696 -9.48087 -8.10020 -6.14254 0.93079 1.34292 1.37861 1.45593 1.51127 2.02341 2.45025 3.04424 3.16517 3.22476 3.62257 3.77491 4.12047 4.15778 4.22193 4.36661 4.42183 4.49139 4.55943 4.61913 4.64033 4.69002 4.73673 4.78377 4.84715 4.95125 5.02985 5.06324 5.13266 5.19767 5.27228 5.33794 5.59214 5.80883 5.89893 5.98530 6.23921 6.52260 6.62988 6.97107 7.50124 7.96789 8.97867 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.008248 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.704571 B = 3393.835458 C = 4641.925774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.101 3.899 3 N -0.470 5.470 4 C 0.169 3.831 5 C -0.055 4.055 6 N -0.350 5.350 7 N -0.342 5.342 8 C 0.357 3.643 9 N -0.456 5.456 10 C 0.217 3.783 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.013 3.987 14 N -0.930 5.930 15 Si 0.943 3.057 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.286 1.286 19 C 0.072 3.928 20 C 0.077 3.923 21 O -0.400 6.400 22 C 0.029 3.971 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.064 0.936 32 H -0.019 1.019 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 -8.358 -7.647 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 N -0.164 5.164 4 C -0.099 4.099 5 C -0.114 4.114 6 N -0.191 5.191 7 N -0.184 5.184 8 C -0.001 4.001 9 N -0.181 5.181 10 C 0.092 3.908 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.185 4.185 14 N -0.571 5.571 15 Si 0.770 3.230 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.213 1.213 19 C -0.056 4.056 20 C 0.001 3.999 21 O -0.319 6.319 22 C -0.068 4.068 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.065 0.935 26 H 0.142 0.858 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.000 1.000 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.986 -7.417 -7.563 17.545 hybrid contribution 0.738 0.366 0.643 1.046 sum -13.248 -7.050 -6.920 16.526 Atomic orbital electron populations 1.22040 0.92159 1.04547 1.02356 1.22124 0.97162 0.77170 1.05543 1.46694 1.49583 1.14665 1.05499 1.25773 1.01089 0.89170 0.93872 1.20394 1.05091 1.03574 0.82301 1.73867 1.21461 1.19676 1.04060 1.74701 1.18469 1.21848 1.03421 1.22685 1.00245 0.87331 0.89791 1.59555 1.16461 1.46666 0.95442 1.19640 0.83079 0.94998 0.93089 1.21856 1.05708 0.95308 1.32794 0.92281 1.25528 0.97321 0.99470 0.96132 1.70042 1.16269 1.30076 1.40762 0.85844 0.77661 0.81692 0.77836 1.19404 1.20615 1.21259 1.22075 0.94310 0.94199 0.95012 1.22489 0.89810 1.00488 0.87152 1.88245 1.36877 1.80531 1.26235 1.22790 1.00486 0.96726 0.86752 0.91615 0.87647 0.93474 0.85824 0.89831 0.88697 0.87318 0.88206 0.91805 1.00042 0.93236 0.89908 0.94045 0.90704 0.91632 0.92489 0.93386 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.10 2.32 6.69 86.38 0.58 2.90 16 3 N -0.47 -16.20 2.81 -514.86 -1.45 -17.65 16 4 C 0.17 5.77 8.07 137.64 1.11 6.88 16 5 C -0.05 -1.05 10.04 71.24 0.72 -0.33 16 6 N -0.35 -15.87 12.18 -49.53 -0.60 -16.48 16 7 N -0.34 -17.50 10.42 -58.01 -0.60 -18.10 16 8 C 0.36 15.96 6.14 260.11 1.60 17.56 16 9 N -0.46 -20.11 4.69 -710.35 -3.33 -23.44 16 10 C 0.22 11.80 4.65 85.56 0.40 12.20 16 11 C -0.52 -31.01 7.30 25.60 0.19 -30.82 16 12 H 0.06 3.69 5.46 -2.91 -0.02 3.67 16 13 C 0.01 0.80 5.45 84.65 0.46 1.26 16 14 N -0.93 -58.44 13.29 21.45 0.29 -58.16 16 15 Si 0.94 49.32 29.54 68.60 2.03 51.35 16 16 H -0.27 -13.52 7.11 99.48 0.71 -12.82 16 17 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 18 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 19 C 0.07 2.86 5.18 86.30 0.45 3.30 16 20 C 0.08 2.53 6.21 71.98 0.45 2.98 16 21 O -0.40 -15.91 7.86 -148.98 -1.17 -17.08 16 22 C 0.03 0.84 11.01 113.37 1.25 2.09 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.12 1.89 7.60 -2.39 -0.02 1.88 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.11 1.28 7.77 -2.39 -0.02 1.26 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 3.60 5.67 -2.39 -0.01 3.59 16 32 H -0.02 -1.13 8.09 -2.39 -0.02 -1.15 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.08 2.93 7.95 -2.39 -0.02 2.91 16 35 H 0.04 1.99 5.89 -2.38 -0.01 1.97 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -82.36 329.38 4.10 -78.26 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.02 Total: 5.22 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 7.93 Total: 16.08 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -5.70 Total: -133.83 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.17 Total: -17.08 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Total: -82.36 4.10 -78.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589638495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.236 kcal (2) G-P(sol) polarization free energy of solvation -82.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds