Wall clock time and date at job start Mon Mar 30 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.98784 * 2 1 4 4 O 1.44045 * 109.98773 * 238.78761 * 2 1 3 5 5 C 1.44387 * 106.97990 * 267.22626 * 4 2 1 6 6 C 1.54998 * 103.48716 * 319.86360 * 5 4 2 7 7 C 1.54094 * 109.87846 * 121.07940 * 2 1 3 8 8 H 1.09001 * 110.49006 * 358.59015 * 7 2 1 9 9 N 1.46900 * 110.49280 * 236.07347 * 7 2 1 10 10 C 1.46897 * 111.00341 * 156.84206 * 9 7 2 11 11 C 1.53041 * 109.46292 * 275.02895 * 10 9 7 12 12 C 1.53191 * 109.31231 * 178.59940 * 11 10 9 13 13 N 1.46931 * 108.76535 * 54.65322 * 12 11 10 14 14 C 1.36936 * 120.62616 * 126.40426 * 13 12 11 15 15 H 1.08003 * 120.00378 * 332.60822 * 14 13 12 16 16 C 1.38818 * 120.00127 * 152.61266 * 14 13 12 17 17 N 1.31618 * 120.00356 * 159.34223 * 16 14 13 18 18 Si 1.86799 * 119.99537 * 339.34571 * 16 14 13 19 19 H 1.48495 * 109.47449 * 92.94127 * 18 16 14 20 20 H 1.48496 * 109.47112 * 212.94374 * 18 16 14 21 21 H 1.48509 * 109.47231 * 332.94145 * 18 16 14 22 22 C 1.46922 * 118.74210 * 306.38892 * 13 12 11 23 23 C 1.53044 * 109.46158 * 154.97351 * 10 9 7 24 24 H 1.08992 * 109.47512 * 298.91864 * 1 2 3 25 25 H 1.09000 * 109.47144 * 58.91574 * 1 2 3 26 26 H 1.09002 * 109.47122 * 178.91399 * 1 2 3 27 27 H 1.09000 * 109.46804 * 181.08207 * 3 2 1 28 28 H 1.09003 * 109.46823 * 301.07944 * 3 2 1 29 29 H 1.08996 * 109.47011 * 61.07952 * 3 2 1 30 30 H 1.08998 * 110.61449 * 201.36155 * 5 4 2 31 31 H 1.09001 * 110.75044 * 78.42797 * 5 4 2 32 32 H 1.08999 * 110.90241 * 278.82259 * 6 5 4 33 33 H 1.09006 * 110.90303 * 155.22208 * 6 5 4 34 34 H 1.00897 * 111.00120 * 280.80598 * 9 7 2 35 35 H 1.09003 * 109.45987 * 35.00631 * 10 9 7 36 36 H 1.08996 * 109.49893 * 298.56539 * 11 10 9 37 37 H 1.08998 * 109.49462 * 58.66353 * 11 10 9 38 38 H 1.09004 * 109.59690 * 294.87204 * 12 11 10 39 39 H 1.08994 * 109.58927 * 174.43714 * 12 11 10 40 40 H 0.96995 * 119.99772 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.58050 * 293.81483 * 22 13 12 42 42 H 1.08995 * 109.70484 * 173.46576 * 22 13 12 43 43 H 1.09006 * 109.49715 * 301.34236 * 23 10 9 44 44 H 1.09000 * 109.49521 * 61.39747 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4379 0.0000 4 8 2.0224 -0.7015 -1.1577 5 6 2.2293 -2.0747 -0.7623 6 6 2.8317 -1.9542 0.6607 7 6 2.0540 -0.7481 1.2411 8 1 1.2238 -1.0910 1.8586 9 7 2.9511 0.1149 2.0211 10 6 3.0217 -0.3268 3.4203 11 6 1.8584 0.2820 4.2065 12 6 1.9152 -0.2087 5.6566 13 7 3.2421 0.0984 6.2079 14 6 3.3664 0.8003 7.3771 15 1 2.5954 1.4960 7.6739 16 6 4.4834 0.6178 8.1809 17 7 4.8191 1.5381 9.0599 18 14 5.5100 -0.9339 8.0148 19 1 6.6213 -0.6924 7.0600 20 1 6.0677 -1.3027 9.3407 21 1 4.6568 -2.0404 7.5116 22 6 4.4330 -0.3621 5.4810 23 6 4.3477 0.1300 4.0329 24 1 -0.3634 0.4969 0.8994 25 1 -0.3633 0.5306 -0.8801 26 1 -0.3633 -1.0275 -0.0195 27 1 3.1428 1.4281 -0.0194 28 1 1.6786 1.9607 -0.8802 29 1 1.7102 1.9492 0.8995 30 1 2.9311 -2.5664 -1.4359 31 1 1.2832 -2.6152 -0.7342 32 1 3.8999 -1.7423 0.6142 33 1 2.6404 -2.8565 1.2417 34 1 3.8701 0.1502 1.6061 35 1 2.9583 -1.4142 3.4614 36 1 1.9353 1.3690 4.1868 37 1 0.9146 -0.0247 3.7556 38 1 1.7481 -1.2854 5.6851 39 1 1.1494 0.2977 6.2440 40 1 5.5999 1.4107 9.6212 41 1 4.4711 -1.4514 5.4953 42 1 5.3296 0.0410 5.9518 43 1 5.1760 -0.2849 3.4583 44 1 4.4013 1.2185 4.0142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590243060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:08 Heat of formation + Delta-G solvation = -22.034810 kcal Electronic energy + Delta-G solvation = -21989.122532 eV Core-core repulsion = 18941.870535 eV Total energy + Delta-G solvation = -3047.251997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26268 -38.06333 -35.21159 -32.96820 -32.29702 -31.04517 -30.36060 -29.04733 -27.20528 -25.39324 -24.11160 -22.88893 -21.87719 -21.40378 -19.76721 -19.30887 -16.99103 -16.43967 -16.09886 -15.51639 -15.02253 -14.79689 -14.21968 -14.13267 -13.82665 -13.62895 -13.29008 -13.20923 -12.81552 -12.53644 -12.29697 -12.25307 -12.05514 -11.80080 -11.70283 -11.56532 -11.30490 -11.10198 -10.93199 -10.76621 -10.64077 -10.41309 -10.19173 -9.93472 -9.81489 -9.66393 -9.41490 -8.62778 -8.28213 -6.97312 -5.94451 -3.29699 3.30579 3.47307 3.49974 3.71477 4.03497 4.47546 4.52823 4.65059 4.86783 4.90634 4.96640 5.02951 5.11771 5.25434 5.36548 5.38416 5.40381 5.45203 5.56474 5.64073 5.71607 5.75249 5.80665 5.87319 5.90097 5.91644 6.08731 6.11437 6.18528 6.28299 6.34430 6.40935 6.44541 6.60774 6.65707 6.75914 6.85486 6.97982 7.23456 7.46368 7.97320 8.33872 8.95138 9.72907 10.11029 11.21767 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035932 B = 0.004600 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.062953 B = 6085.408532 C = 6374.184849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 C -0.119 4.119 4 O -0.372 6.372 5 C 0.049 3.951 6 C -0.187 4.187 7 C 0.066 3.934 8 H 0.092 0.908 9 N -0.671 5.671 10 C 0.095 3.905 11 C -0.118 4.118 12 C 0.148 3.852 13 N -0.604 5.604 14 C -0.258 4.258 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.882 3.118 19 H -0.289 1.289 20 H -0.303 1.303 21 H -0.272 1.272 22 C 0.129 3.871 23 C -0.134 4.134 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.340 0.660 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.018 0.982 39 H 0.064 0.936 40 H 0.262 0.738 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -6.245 -18.873 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 C -0.177 4.177 4 O -0.292 6.292 5 C -0.028 4.028 6 C -0.226 4.226 7 C -0.045 4.045 8 H 0.110 0.890 9 N -0.302 5.302 10 C -0.013 4.013 11 C -0.158 4.158 12 C 0.021 3.979 13 N -0.328 5.328 14 C -0.387 4.387 15 H 0.103 0.897 16 C -0.176 4.176 17 N -0.552 5.552 18 Si 0.713 3.287 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.197 1.197 22 C 0.003 3.997 23 C -0.174 4.174 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.138 -5.600 -18.779 20.535 hybrid contribution 1.225 -1.932 0.094 2.290 sum -4.913 -7.532 -18.685 20.737 Atomic orbital electron populations 1.22201 0.94898 1.01951 1.02678 1.22222 0.93264 0.93990 0.84247 1.21582 1.01534 0.92902 1.01646 1.88967 1.86118 1.20274 1.33831 1.23380 0.99532 0.84807 0.95051 1.23884 1.01020 1.00335 0.97376 1.22997 0.96489 0.90322 0.94722 0.89010 1.60701 1.15088 1.52088 1.02301 1.21470 0.96776 0.96564 0.86539 1.22014 0.95903 1.01638 0.96239 1.20950 0.88231 0.96717 0.91982 1.44343 0.99410 1.64903 1.24171 1.18940 1.07612 1.16234 0.95869 0.89681 1.25274 0.98040 0.97742 0.96515 1.69837 1.26919 1.32754 1.25682 0.86955 0.80013 0.86146 0.75580 1.21712 1.23161 1.19718 1.21283 0.91735 0.96189 0.90508 1.22213 0.94783 1.02448 0.97918 0.91178 0.91996 0.92792 0.92187 0.93537 0.90132 0.89345 0.92405 0.90456 0.90357 0.84025 0.94563 0.91213 0.93236 0.96403 0.91762 0.92792 0.96063 0.90834 0.93254 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.62 37.16 0.32 -1.26 16 2 C 0.10 1.14 1.20 -90.04 -0.11 1.03 16 3 C -0.12 -1.35 7.89 37.16 0.29 -1.05 16 4 O -0.37 -4.49 10.88 -35.23 -0.38 -4.88 16 5 C 0.05 0.47 7.67 38.21 0.29 0.77 16 6 C -0.19 -1.86 6.74 -24.72 -0.17 -2.03 16 7 C 0.07 0.74 2.72 -66.19 -0.18 0.56 16 8 H 0.09 1.07 6.75 -51.93 -0.35 0.71 16 9 N -0.67 -8.43 4.33 -98.10 -0.42 -8.86 16 10 C 0.10 1.43 2.32 -67.67 -0.16 1.28 16 11 C -0.12 -1.92 5.57 -26.61 -0.15 -2.07 16 12 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 13 N -0.60 -14.29 2.77 -172.32 -0.48 -14.77 16 14 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 15 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.02 0.67 5.23 -17.43 -0.09 0.57 16 17 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16 18 Si 0.88 22.41 24.35 -169.99 -4.14 18.27 16 19 H -0.29 -7.08 6.62 56.52 0.37 -6.70 16 20 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 21 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 22 C 0.13 2.79 4.20 -3.72 -0.02 2.77 16 23 C -0.13 -2.31 5.36 -26.61 -0.14 -2.45 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 32 H 0.08 0.78 7.60 -51.93 -0.39 0.39 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.34 4.12 7.29 -39.29 -0.29 3.84 16 35 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.71 7.46 -51.93 -0.39 0.32 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.02 0.46 7.07 -51.93 -0.37 0.09 16 42 H 0.07 1.75 4.50 -51.93 -0.23 1.52 16 43 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -30.11 328.32 -7.87 -37.98 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.89 Total: 0.87 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.28 Total: -6.40 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.13 Total: -50.79 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.11 -7.87 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590243060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.946 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds