Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.98784 * 2 1 4 4 O 1.44045 * 109.98773 * 238.78761 * 2 1 3 5 5 C 1.44387 * 106.97990 * 267.22626 * 4 2 1 6 6 C 1.54998 * 103.48716 * 319.86360 * 5 4 2 7 7 C 1.54094 * 109.87846 * 121.07940 * 2 1 3 8 8 H 1.09001 * 110.49006 * 358.59015 * 7 2 1 9 9 N 1.46900 * 110.49280 * 236.07347 * 7 2 1 10 10 C 1.46897 * 111.00341 * 156.84206 * 9 7 2 11 11 C 1.53041 * 109.46292 * 275.02895 * 10 9 7 12 12 C 1.53191 * 109.31231 * 178.59940 * 11 10 9 13 13 N 1.46931 * 108.76535 * 54.65322 * 12 11 10 14 14 C 1.36936 * 120.62616 * 126.40426 * 13 12 11 15 15 H 1.08003 * 120.00378 * 332.60822 * 14 13 12 16 16 C 1.38818 * 120.00127 * 152.61266 * 14 13 12 17 17 N 1.31618 * 120.00356 * 159.34223 * 16 14 13 18 18 Si 1.86799 * 119.99537 * 339.34571 * 16 14 13 19 19 H 1.48495 * 109.47449 * 92.94127 * 18 16 14 20 20 H 1.48496 * 109.47112 * 212.94374 * 18 16 14 21 21 H 1.48509 * 109.47231 * 332.94145 * 18 16 14 22 22 C 1.46922 * 118.74210 * 306.38892 * 13 12 11 23 23 C 1.53044 * 109.46158 * 154.97351 * 10 9 7 24 24 H 1.08992 * 109.47512 * 298.91864 * 1 2 3 25 25 H 1.09000 * 109.47144 * 58.91574 * 1 2 3 26 26 H 1.09002 * 109.47122 * 178.91399 * 1 2 3 27 27 H 1.09000 * 109.46804 * 181.08207 * 3 2 1 28 28 H 1.09003 * 109.46823 * 301.07944 * 3 2 1 29 29 H 1.08996 * 109.47011 * 61.07952 * 3 2 1 30 30 H 1.08998 * 110.61449 * 201.36155 * 5 4 2 31 31 H 1.09001 * 110.75044 * 78.42797 * 5 4 2 32 32 H 1.08999 * 110.90241 * 278.82259 * 6 5 4 33 33 H 1.09006 * 110.90303 * 155.22208 * 6 5 4 34 34 H 1.00897 * 111.00120 * 280.80598 * 9 7 2 35 35 H 1.09003 * 109.45987 * 35.00631 * 10 9 7 36 36 H 1.08996 * 109.49893 * 298.56539 * 11 10 9 37 37 H 1.08998 * 109.49462 * 58.66353 * 11 10 9 38 38 H 1.09004 * 109.59690 * 294.87204 * 12 11 10 39 39 H 1.08994 * 109.58927 * 174.43714 * 12 11 10 40 40 H 0.96995 * 119.99772 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.58050 * 293.81483 * 22 13 12 42 42 H 1.08995 * 109.70484 * 173.46576 * 22 13 12 43 43 H 1.09006 * 109.49715 * 301.34236 * 23 10 9 44 44 H 1.09000 * 109.49521 * 61.39747 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4379 0.0000 4 8 2.0224 -0.7015 -1.1577 5 6 2.2293 -2.0747 -0.7623 6 6 2.8317 -1.9542 0.6607 7 6 2.0540 -0.7481 1.2411 8 1 1.2238 -1.0910 1.8586 9 7 2.9511 0.1149 2.0211 10 6 3.0217 -0.3268 3.4203 11 6 1.8584 0.2820 4.2065 12 6 1.9152 -0.2087 5.6566 13 7 3.2421 0.0984 6.2079 14 6 3.3664 0.8003 7.3771 15 1 2.5954 1.4960 7.6739 16 6 4.4834 0.6178 8.1809 17 7 4.8191 1.5381 9.0599 18 14 5.5100 -0.9339 8.0148 19 1 6.6213 -0.6924 7.0600 20 1 6.0677 -1.3027 9.3407 21 1 4.6568 -2.0404 7.5116 22 6 4.4330 -0.3621 5.4810 23 6 4.3477 0.1300 4.0329 24 1 -0.3634 0.4969 0.8994 25 1 -0.3633 0.5306 -0.8801 26 1 -0.3633 -1.0275 -0.0195 27 1 3.1428 1.4281 -0.0194 28 1 1.6786 1.9607 -0.8802 29 1 1.7102 1.9492 0.8995 30 1 2.9311 -2.5664 -1.4359 31 1 1.2832 -2.6152 -0.7342 32 1 3.8999 -1.7423 0.6142 33 1 2.6404 -2.8565 1.2417 34 1 3.8701 0.1502 1.6061 35 1 2.9583 -1.4142 3.4614 36 1 1.9353 1.3690 4.1868 37 1 0.9146 -0.0247 3.7556 38 1 1.7481 -1.2854 5.6851 39 1 1.1494 0.2977 6.2440 40 1 5.5999 1.4107 9.6212 41 1 4.4711 -1.4514 5.4953 42 1 5.3296 0.0410 5.9518 43 1 5.1760 -0.2849 3.4583 44 1 4.4013 1.2185 4.0142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590243060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -42.159631 kcal Electronic energy + Delta-G solvation = -21989.995210 eV Core-core repulsion = 18941.870535 eV Total energy + Delta-G solvation = -3048.124675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14166 -39.49617 -36.55705 -34.35085 -33.54407 -32.44565 -31.91088 -30.27117 -28.09735 -26.69616 -25.54179 -24.31297 -23.19973 -22.55679 -20.83696 -20.60401 -18.81671 -17.56407 -17.18891 -16.89766 -16.19345 -15.92653 -15.82781 -15.31001 -15.22522 -14.92134 -14.55191 -14.37695 -14.03600 -13.98695 -13.78974 -13.38346 -13.19814 -13.06527 -12.80864 -12.60718 -12.53078 -12.38127 -12.19403 -12.06935 -11.95269 -11.79274 -11.63827 -11.60790 -11.25399 -11.16851 -10.69785 -10.57290 -9.28603 -8.93531 -8.16441 -5.47754 1.28721 1.40342 1.49562 2.41405 2.93633 3.01849 3.05869 3.37918 3.65967 3.83412 3.89142 4.02735 4.11352 4.15459 4.28425 4.31473 4.35854 4.42246 4.53871 4.58215 4.67537 4.69682 4.80045 4.83930 4.86572 4.89096 4.97384 5.01860 5.01973 5.07459 5.09730 5.10999 5.19134 5.29280 5.33241 5.53995 5.56976 5.87497 6.05965 6.12594 6.16069 6.47573 6.92741 7.63376 8.03631 9.03825 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035932 B = 0.004600 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.062953 B = 6085.408532 C = 6374.184849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 C -0.117 4.117 4 O -0.392 6.392 5 C 0.047 3.953 6 C -0.182 4.182 7 C 0.066 3.934 8 H 0.093 0.907 9 N -0.670 5.670 10 C 0.107 3.893 11 C -0.107 4.107 12 C 0.142 3.858 13 N -0.619 5.619 14 C -0.249 4.249 15 H 0.050 0.950 16 C -0.036 4.036 17 N -0.959 5.959 18 Si 0.949 3.051 19 H -0.274 1.274 20 H -0.311 1.311 21 H -0.261 1.261 22 C 0.123 3.877 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.346 0.654 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.053 0.947 40 H 0.261 0.739 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 -8.424 -21.271 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 C -0.174 4.174 4 O -0.312 6.312 5 C -0.030 4.030 6 C -0.222 4.222 7 C -0.045 4.045 8 H 0.111 0.889 9 N -0.301 5.301 10 C -0.002 4.002 11 C -0.146 4.146 12 C 0.017 3.983 13 N -0.344 5.344 14 C -0.378 4.378 15 H 0.067 0.933 16 C -0.230 4.230 17 N -0.605 5.605 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.240 1.240 21 H -0.186 1.186 22 C -0.003 4.003 23 C -0.164 4.164 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.166 0.834 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.311 -7.802 -21.238 23.489 hybrid contribution 1.182 -1.198 0.779 1.855 sum -5.128 -9.001 -20.458 22.932 Atomic orbital electron populations 1.22181 0.94035 1.02526 1.02799 1.22237 0.93917 0.93581 0.84087 1.21538 1.01128 0.93383 1.01377 1.88951 1.86307 1.21578 1.34322 1.23542 1.00490 0.83858 0.95085 1.23846 1.00742 0.99989 0.97589 1.23019 0.96324 0.90640 0.94523 0.88895 1.60585 1.15725 1.52572 1.01177 1.21233 0.94649 0.96725 0.87594 1.21845 0.98024 1.00378 0.94360 1.21127 0.85963 0.97540 0.93641 1.44476 1.01759 1.64873 1.23295 1.18884 1.06274 1.15330 0.97359 0.93260 1.25907 0.99909 1.00466 0.96742 1.69974 1.28181 1.34773 1.27591 0.85880 0.78898 0.82169 0.75301 1.20088 1.24044 1.18555 1.21345 0.89798 0.96554 0.92565 1.22056 0.97379 1.01390 0.95595 0.91028 0.91956 0.91984 0.92747 0.93365 0.90826 0.88068 0.91283 0.90532 0.89366 0.83415 0.93653 0.93126 0.90559 0.94825 0.92823 0.92978 0.94954 0.93373 0.90378 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.62 71.98 0.62 -2.11 16 2 C 0.10 2.00 1.20 -10.42 -0.01 1.99 16 3 C -0.12 -2.44 7.89 71.98 0.57 -1.87 16 4 O -0.39 -8.42 10.88 -148.98 -1.62 -10.05 16 5 C 0.05 0.74 7.67 72.67 0.56 1.30 16 6 C -0.18 -2.97 6.74 31.89 0.22 -2.75 16 7 C 0.07 1.26 2.72 45.90 0.12 1.38 16 8 H 0.09 1.79 6.75 -2.39 -0.02 1.78 16 9 N -0.67 -14.87 4.33 -464.29 -2.01 -16.88 16 10 C 0.11 2.90 2.32 44.94 0.10 3.00 16 11 C -0.11 -3.24 5.57 30.67 0.17 -3.07 16 12 C 0.14 5.37 6.52 86.36 0.56 5.94 16 13 N -0.62 -28.93 2.77 -699.11 -1.94 -30.87 16 14 C -0.25 -14.25 10.04 84.04 0.84 -13.40 16 15 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 16 C -0.04 -2.10 5.23 84.86 0.44 -1.66 16 17 N -0.96 -60.87 13.97 21.65 0.30 -60.57 16 18 Si 0.95 46.59 24.35 68.60 1.67 48.26 16 19 H -0.27 -12.67 6.62 99.48 0.66 -12.01 16 20 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 21 H -0.26 -12.20 6.64 99.48 0.66 -11.54 16 22 C 0.12 5.07 4.20 86.36 0.36 5.44 16 23 C -0.12 -4.00 5.36 30.67 0.16 -3.83 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 0.96 8.13 -2.39 -0.02 0.95 16 27 H 0.05 1.17 7.45 -2.39 -0.02 1.16 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.63 7.89 -2.39 -0.02 1.61 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.08 1.27 7.60 -2.39 -0.02 1.26 16 33 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.35 7.32 7.29 -89.70 -0.65 6.66 16 35 H 0.05 1.19 7.80 -2.39 -0.02 1.17 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.93 7.46 -2.39 -0.02 1.91 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 40 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.03 1.28 7.07 -2.38 -0.02 1.27 16 42 H 0.05 2.23 4.50 -2.39 -0.01 2.22 16 43 H 0.08 2.07 8.10 -2.38 -0.02 2.05 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -65.77 328.32 1.34 -64.43 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.21 Total: 15.32 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.73 Total: -9.65 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.64 Total: -108.31 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -1.62 Total: -10.05 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.26 kcal Total: -65.77 1.34 -64.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590243060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.273 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds