Wall clock time and date at job start Mon Mar 30 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47003 * 270.00020 * 3 2 1 5 5 H 1.48493 * 109.47283 * 30.00036 * 3 2 1 6 6 H 1.48497 * 109.46801 * 150.00482 * 3 2 1 7 7 C 1.37873 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00401 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00264 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47391 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99813 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46792 * 174.08072 * 11 10 9 13 13 N 1.46889 * 109.54828 * 293.75513 * 12 11 10 14 14 C 1.48559 * 111.00154 * 67.85458 * 13 12 11 15 15 C 1.54382 * 104.70276 * 200.90368 * 14 13 12 16 16 C 1.54570 * 104.90830 * 23.88003 * 15 14 13 17 17 C 1.48560 * 110.99966 * 312.43578 * 13 12 11 18 18 C 1.53183 * 109.54068 * 53.93593 * 12 11 10 19 19 C 1.53097 * 109.15874 * 63.05945 * 18 12 11 20 20 O 1.42898 * 109.48856 * 57.47772 * 19 18 12 21 21 C 1.42907 * 114.09522 * 298.88737 * 20 19 18 22 22 C 1.53083 * 109.41836 * 61.15787 * 21 20 19 23 23 H 0.97003 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47041 * 60.00056 * 9 7 2 25 25 H 1.09000 * 109.47212 * 300.00475 * 9 7 2 26 26 H 1.00901 * 111.00350 * 56.04596 * 10 9 7 27 27 H 1.09000 * 109.46993 * 54.08856 * 11 10 9 28 28 H 1.08994 * 109.46973 * 294.08408 * 11 10 9 29 29 H 1.09005 * 110.41135 * 319.73981 * 14 13 12 30 30 H 1.09003 * 110.41393 * 82.06231 * 14 13 12 31 31 H 1.08994 * 110.32784 * 142.80776 * 15 14 13 32 32 H 1.09004 * 110.32219 * 265.01663 * 15 14 13 33 33 H 1.09001 * 110.29661 * 241.08415 * 16 15 14 34 34 H 1.08992 * 110.40321 * 118.94287 * 16 15 14 35 35 H 1.08998 * 110.41515 * 277.81987 * 17 13 12 36 36 H 1.09004 * 110.41057 * 40.14426 * 17 13 12 37 37 H 1.08995 * 109.52016 * 182.88175 * 18 12 11 38 38 H 1.09007 * 109.52040 * 303.06518 * 18 12 11 39 39 H 1.09001 * 109.41095 * 297.49011 * 19 18 12 40 40 H 1.09004 * 109.49171 * 177.50743 * 19 18 12 41 41 H 1.09008 * 109.47776 * 301.17400 * 21 20 19 42 42 H 1.09006 * 109.47986 * 181.14586 * 21 20 19 43 43 H 1.08992 * 109.52922 * 182.48873 * 22 21 20 44 44 H 1.09002 * 109.52404 * 62.29150 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5235 -6.0394 -0.1487 13 7 3.1484 -5.9672 -1.4761 14 6 4.0029 -4.7580 -1.5972 15 6 4.1384 -4.5247 -3.1173 16 6 2.8993 -5.2102 -3.7369 17 6 2.1237 -5.7980 -2.5384 18 6 3.6002 -5.9056 0.9326 19 6 2.9512 -6.0630 2.3102 20 8 2.2852 -7.3252 2.3820 21 6 1.2360 -7.4866 1.4253 22 6 1.8163 -7.3886 0.0121 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8406 -3.5487 0.7808 27 1 0.8020 -4.9393 -0.8320 28 1 0.9638 -5.0262 0.9385 29 1 3.5211 -3.9030 -1.1229 30 1 4.9812 -4.9376 -1.1515 31 1 4.1330 -3.4575 -3.3385 32 1 5.0532 -4.9850 -3.4909 33 1 3.2071 -6.0058 -4.4155 34 1 2.2851 -4.4803 -4.2641 35 1 1.6879 -6.7613 -2.8032 36 1 1.3468 -5.1073 -2.2106 37 1 4.3529 -6.6818 0.7951 38 1 4.0698 -4.9246 0.8596 39 1 2.2286 -5.2614 2.4639 40 1 3.7193 -6.0128 3.0820 41 1 0.4909 -6.7036 1.5674 42 1 0.7684 -8.4621 1.5596 43 1 1.0114 -7.4673 -0.7185 44 1 2.5319 -8.1958 -0.1445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591733920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:02 Heat of formation + Delta-G solvation = -45.491862 kcal Electronic energy + Delta-G solvation = -22573.723880 eV Core-core repulsion = 19525.454709 eV Total energy + Delta-G solvation = -3048.269171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72024 -39.00335 -36.85979 -35.18186 -33.91389 -32.26908 -30.59133 -29.62628 -29.18879 -26.24382 -24.77750 -24.68199 -23.37320 -22.18623 -21.16517 -19.63956 -18.39610 -18.04557 -17.06909 -16.90449 -16.82764 -16.35742 -15.78880 -15.61577 -15.40591 -15.19203 -14.77112 -14.33431 -14.14914 -13.75390 -13.47552 -13.20985 -13.00864 -12.83251 -12.77318 -12.63333 -12.49553 -12.35116 -12.21632 -12.08200 -11.97038 -11.78012 -11.47242 -11.26277 -11.17661 -11.07071 -10.67396 -10.51260 -9.62501 -8.50100 -8.24691 -6.35495 1.40446 1.41175 1.52195 2.37647 2.92209 3.09667 3.09878 3.44120 3.69485 3.86425 3.94348 4.02771 4.08826 4.13326 4.20568 4.28775 4.29964 4.45389 4.55200 4.68144 4.72049 4.75256 4.79331 4.85070 4.92785 4.96398 5.04578 5.08862 5.11237 5.17601 5.18455 5.20006 5.23899 5.37975 5.43538 5.57360 5.79514 5.98315 6.11374 6.22533 6.31695 6.32979 6.60051 6.84321 7.35668 8.86739 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.006373 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.136825 B = 4392.592083 C = 5265.717578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.210 3.790 10 N -0.659 5.659 11 C 0.025 3.975 12 C 0.109 3.891 13 N -0.489 5.489 14 C -0.019 4.019 15 C -0.119 4.119 16 C -0.117 4.117 17 C 0.024 3.976 18 C -0.138 4.138 19 C 0.061 3.939 20 O -0.393 6.393 21 C 0.057 3.943 22 C -0.129 4.129 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.041 1.041 26 H 0.335 0.665 27 H 0.066 0.934 28 H 0.024 0.976 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.111 0.889 41 H 0.043 0.957 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -13.982 -1.026 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.290 5.290 11 C -0.106 4.106 12 C 0.018 3.982 13 N -0.212 5.212 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.104 4.104 18 C -0.176 4.176 19 C -0.016 4.016 20 O -0.312 6.312 21 C -0.020 4.020 22 C -0.168 4.168 23 H 0.073 0.927 24 H 0.015 0.985 25 H -0.024 1.024 26 H 0.154 0.846 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.129 0.871 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.125 -14.495 -1.630 15.820 hybrid contribution -1.011 2.053 0.676 2.386 sum 5.114 -12.441 -0.954 13.485 Atomic orbital electron populations 1.70089 1.07810 1.27905 1.51571 1.25896 0.95675 1.03248 0.94656 0.85391 0.78641 0.78273 0.78369 1.20037 1.20987 1.18573 1.21492 0.93795 0.91152 1.50415 0.91488 1.19195 0.90596 0.88972 0.92978 1.60681 1.19465 1.01377 1.47450 1.22858 0.97354 0.90571 0.99780 1.21164 0.93039 0.93266 0.90736 1.65718 1.16205 1.37738 1.01512 1.24157 0.97781 0.95976 0.96788 1.22237 0.98158 0.99624 0.95707 1.22246 0.96500 0.99645 0.97119 1.23217 0.94784 1.00046 0.92337 1.22216 0.98201 1.03284 0.93927 1.22663 0.96277 0.85279 0.97395 1.87875 1.50272 1.36186 1.56890 1.22766 0.89052 1.02760 0.87428 1.22089 1.00773 0.96324 0.97584 0.92724 0.98538 1.02382 0.84602 0.91583 0.95846 0.86599 0.91916 0.92837 0.91296 0.90325 0.92391 0.89850 0.94452 0.90111 0.90456 0.94510 0.87063 0.93875 0.86646 0.90477 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.53 -29.06 9.32 25.60 0.24 -28.82 16 8 H 0.07 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.21 10.79 5.43 85.56 0.46 11.25 16 10 N -0.66 -26.14 2.76 -517.92 -1.43 -27.57 16 11 C 0.02 0.84 3.63 86.30 0.31 1.16 16 12 C 0.11 3.03 0.43 3.65 0.00 3.03 16 13 N -0.49 -14.06 5.19 -831.47 -4.32 -18.38 16 14 C -0.02 -0.59 4.90 86.45 0.42 -0.17 16 15 C -0.12 -3.42 7.02 31.60 0.22 -3.20 16 16 C -0.12 -3.16 7.01 31.60 0.22 -2.94 16 17 C 0.02 0.69 5.59 86.45 0.48 1.17 16 18 C -0.14 -3.62 4.08 30.69 0.13 -3.49 16 19 C 0.06 1.55 6.57 72.01 0.47 2.02 16 20 O -0.39 -10.38 10.77 -148.98 -1.60 -11.99 16 21 C 0.06 1.32 6.57 72.01 0.47 1.79 16 22 C -0.13 -3.06 4.97 30.68 0.15 -2.91 16 23 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 24 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 25 H -0.04 -2.34 8.14 -2.39 -0.02 -2.35 16 26 H 0.34 12.74 6.82 -89.69 -0.61 12.13 16 27 H 0.07 2.41 5.51 -2.39 -0.01 2.40 16 28 H 0.02 0.82 5.05 -2.39 -0.01 0.81 16 29 H 0.12 4.25 4.13 -14.71 -0.06 4.19 16 30 H 0.06 1.85 7.74 -2.39 -0.02 1.83 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 2.08 7.90 -2.39 -0.02 2.06 16 36 H 0.04 1.26 5.07 -2.38 -0.01 1.25 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.13 5.36 -2.38 -0.01 2.12 16 39 H 0.04 1.04 6.75 -2.39 -0.02 1.03 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.04 1.08 6.47 -2.38 -0.02 1.06 16 42 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.08 1.72 7.53 -2.39 -0.02 1.70 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -60.45 319.71 -0.66 -61.11 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.32 Total: 27.08 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.05 Total: -20.45 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -5.46 Total: -101.22 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.60 Total: -11.99 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -60.45 -0.66 -61.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591733920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.621 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds