Wall clock time and date at job start Mon Mar 30 2020 01:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47290 * 274.06788 * 3 2 1 5 5 H 1.48505 * 109.46919 * 34.06786 * 3 2 1 6 6 H 1.48495 * 109.47066 * 154.06659 * 3 2 1 7 7 C 1.38814 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00222 * 197.52434 * 7 2 1 9 9 N 1.36942 * 119.99818 * 17.53151 * 7 2 1 10 10 C 1.46920 * 120.62926 * 208.00083 * 9 7 2 11 11 C 1.53193 * 108.77516 * 233.62852 * 10 9 7 12 12 C 1.53043 * 109.30931 * 305.35962 * 11 10 9 13 13 N 1.46904 * 109.45787 * 181.38475 * 12 11 10 14 14 C 1.46904 * 110.99537 * 155.00305 * 13 12 11 15 15 C 1.53000 * 109.46681 * 179.97438 * 14 13 12 16 16 O 1.42900 * 110.44118 * 300.69991 * 15 14 13 17 17 C 1.54898 * 110.59648 * 63.32169 * 15 14 13 18 18 C 1.54889 * 102.74606 * 156.67434 * 17 15 14 19 19 C 1.54269 * 104.19613 * 322.05390 * 18 17 15 20 20 C 1.53874 * 106.59981 * 23.61351 * 19 18 17 21 21 C 1.53045 * 109.53664 * 61.36729 * 12 11 10 22 22 C 1.46923 * 120.63292 * 28.01569 * 9 7 2 23 23 H 0.97001 * 120.00401 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.59448 * 113.83489 * 10 9 7 25 25 H 1.09010 * 109.70596 * 353.47976 * 10 9 7 26 26 H 1.09002 * 109.49926 * 185.41315 * 11 10 9 27 27 H 1.09001 * 109.52349 * 65.32748 * 11 10 9 28 28 H 1.08998 * 109.46181 * 301.36250 * 12 11 10 29 29 H 1.00903 * 110.99940 * 278.95579 * 13 12 11 30 30 H 1.08998 * 109.47293 * 60.00316 * 14 13 12 31 31 H 1.08992 * 109.47051 * 300.00238 * 14 13 12 32 32 H 0.96706 * 113.99504 * 57.45511 * 16 15 14 33 33 H 1.08995 * 110.75200 * 274.98462 * 17 15 14 34 34 H 1.08998 * 110.75535 * 38.35832 * 17 15 14 35 35 H 1.09002 * 110.48317 * 203.38188 * 18 17 15 36 36 H 1.08997 * 110.48697 * 80.73239 * 18 17 15 37 37 H 1.08995 * 110.03569 * 264.32730 * 19 18 17 38 38 H 1.09000 * 110.02916 * 142.89746 * 19 18 17 39 39 H 1.09000 * 110.03482 * 240.71387 * 20 19 18 40 40 H 1.08995 * 110.03354 * 119.28131 * 20 19 18 41 41 H 1.09002 * 109.49518 * 58.58378 * 21 12 11 42 42 H 1.08994 * 109.49865 * 178.68258 * 21 12 11 43 43 H 1.08996 * 109.58778 * 246.16489 * 22 9 7 44 44 H 1.09005 * 109.58735 * 6.44485 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5880 1.4169 0.6123 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3732 -2.3607 -0.3562 10 6 1.8145 -3.6541 0.1832 11 6 2.0774 -4.6111 -0.9838 12 6 0.8283 -4.6906 -1.8644 13 7 1.0654 -5.6330 -2.9662 14 6 -0.1995 -6.1907 -3.4632 15 6 0.0875 -7.1648 -4.6076 16 8 0.7670 -6.4971 -5.6727 17 6 0.9216 -8.3683 -4.1025 18 6 0.5988 -9.4688 -5.1436 19 6 -0.8976 -9.2648 -5.4581 20 6 -1.2228 -7.7999 -5.1173 21 6 0.5163 -3.3057 -2.4363 22 6 0.2358 -2.3340 -1.2858 23 1 -0.4851 0.8400 -0.0004 24 1 1.0367 -4.0666 0.8259 25 1 2.7305 -3.5192 0.7586 26 1 2.3125 -5.6022 -0.5957 27 1 2.9163 -4.2433 -1.5746 28 1 -0.0159 -5.0351 -1.2671 29 1 1.5849 -5.1943 -3.7117 30 1 -0.8355 -5.3828 -3.8251 31 1 -0.7064 -6.7180 -2.6551 32 1 1.5981 -6.0793 -5.4082 33 1 1.9853 -8.1308 -4.1087 34 1 0.5982 -8.6717 -3.1068 35 1 0.7677 -10.4579 -4.7179 36 1 1.1997 -9.3315 -6.0425 37 1 -1.5024 -9.9336 -4.8458 38 1 -1.0860 -9.4529 -6.5151 39 1 -1.9853 -7.7578 -4.3396 40 1 -1.5689 -7.2771 -6.0088 41 1 1.3699 -2.9497 -3.0133 42 1 -0.3596 -3.3676 -3.0820 43 1 -0.6707 -2.6387 -0.7629 44 1 0.1091 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591736051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:36 Heat of formation + Delta-G solvation = -46.920332 kcal Electronic energy + Delta-G solvation = -21427.120884 eV Core-core repulsion = 18378.789769 eV Total energy + Delta-G solvation = -3048.331114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.55367 -37.83539 -35.14907 -34.54691 -32.19798 -30.16247 -29.73888 -28.93899 -27.93752 -24.91305 -23.42238 -22.08068 -21.41167 -20.71940 -20.05429 -19.24524 -17.08176 -16.54598 -15.79432 -15.64095 -14.88798 -14.61550 -14.39372 -14.05403 -13.71115 -13.51480 -13.19354 -12.97021 -12.70492 -12.44586 -12.30384 -11.82455 -11.61761 -11.40168 -11.37237 -11.17208 -11.10475 -10.75286 -10.71744 -10.63549 -10.55361 -10.43309 -10.14889 -10.08479 -9.85952 -9.66578 -9.48271 -8.49842 -8.09132 -6.67105 -5.78880 -3.21024 3.37637 3.44801 3.46178 4.07142 4.16950 4.49868 4.50003 4.67008 4.73750 5.06461 5.29324 5.32440 5.37453 5.38420 5.45400 5.53832 5.56272 5.64920 5.69981 5.75662 5.78792 5.86656 5.90333 5.95977 6.05843 6.14168 6.16496 6.24610 6.32659 6.45004 6.54432 6.61310 6.65755 6.82383 7.00164 7.29578 7.32048 7.51313 7.61543 7.65541 7.79989 8.45368 9.21518 9.85368 10.42239 11.29649 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042519 B = 0.003686 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.368103 B = 7594.094775 C = 7769.429351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.117 4.117 12 C 0.096 3.904 13 N -0.685 5.685 14 C 0.036 3.964 15 C 0.130 3.870 16 O -0.557 6.557 17 C -0.132 4.132 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.167 4.167 22 C 0.175 3.825 23 H 0.253 0.747 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.331 0.669 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.375 0.625 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.016 0.984 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -16.503 -9.243 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.316 5.316 14 C -0.094 4.094 15 C 0.089 3.911 16 O -0.364 6.364 17 C -0.170 4.170 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.151 4.151 21 C -0.207 4.207 22 C 0.049 3.951 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.223 0.777 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.999 -17.114 -9.137 19.426 hybrid contribution 0.408 1.912 -0.169 1.962 sum -0.591 -15.202 -9.307 17.834 Atomic orbital electron populations 1.70039 1.05287 1.25451 1.54009 1.25044 0.95272 0.98438 1.00961 0.86277 0.79198 0.83740 0.77586 1.21517 1.21791 1.20354 1.19223 0.92791 0.84938 1.41211 0.91638 1.44064 1.36434 1.01544 1.49488 1.20922 0.97595 0.86791 0.92928 1.21979 0.96740 0.98992 0.97929 1.21508 0.98343 0.89888 0.91536 1.60782 1.18951 1.39231 1.12636 1.22603 0.92421 0.97400 0.96959 1.22087 0.92329 0.90905 0.85791 1.86509 1.39833 1.73374 1.36653 1.22962 1.00551 0.94778 0.98683 1.22351 0.95972 0.98577 0.99262 1.22099 0.96682 0.95983 1.01152 1.22129 0.95676 0.95445 1.01826 1.22839 1.00001 0.97418 1.00490 1.20675 0.88722 0.98103 0.87639 0.93682 0.96632 0.92706 0.92638 0.92534 0.91361 0.85068 0.94494 0.90360 0.77699 0.90884 0.90637 0.91983 0.91614 0.91906 0.91955 0.90547 0.90819 0.92587 0.93761 0.96595 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 11.22 55.49 0.62 -25.77 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.90 2.99 -172.32 -0.52 -15.41 16 10 C 0.14 3.04 6.51 -3.71 -0.02 3.02 16 11 C -0.12 -2.03 5.69 -26.61 -0.15 -2.18 16 12 C 0.10 1.59 2.43 -67.67 -0.16 1.43 16 13 N -0.69 -9.15 5.96 -106.68 -0.64 -9.78 16 14 C 0.04 0.44 4.56 -3.82 -0.02 0.43 16 15 C 0.13 1.43 1.00 -88.95 -0.09 1.34 16 16 O -0.56 -6.61 13.03 -35.23 -0.46 -7.06 16 17 C -0.13 -1.34 5.79 -24.73 -0.14 -1.48 16 18 C -0.12 -1.14 6.81 -25.07 -0.17 -1.31 16 19 C -0.12 -1.08 6.80 -25.61 -0.17 -1.25 16 20 C -0.11 -1.14 6.12 -25.61 -0.16 -1.29 16 21 C -0.17 -3.15 5.33 -26.61 -0.14 -3.29 16 22 C 0.18 4.19 5.31 -3.71 -0.02 4.17 16 23 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 1.13 7.94 -51.92 -0.41 0.72 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 29 H 0.33 4.22 6.89 -39.29 -0.27 3.95 16 30 H 0.04 0.50 7.41 -51.93 -0.38 0.12 16 31 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.37 3.64 7.47 45.56 0.34 3.98 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.70 7.84 -51.93 -0.41 0.30 16 40 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.79 7.42 -51.93 -0.39 0.40 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -29.39 335.58 -9.71 -39.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.27 Total: 4.69 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.48 Total: -7.59 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.53 Total: -50.96 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.46 Total: -7.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.39 -9.71 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.813 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds