Wall clock time and date at job start Mon Mar 30 2020 01:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47290 * 274.06788 * 3 2 1 5 5 H 1.48505 * 109.46919 * 34.06786 * 3 2 1 6 6 H 1.48495 * 109.47066 * 154.06659 * 3 2 1 7 7 C 1.38814 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00222 * 197.52434 * 7 2 1 9 9 N 1.36942 * 119.99818 * 17.53151 * 7 2 1 10 10 C 1.46920 * 120.62926 * 208.00083 * 9 7 2 11 11 C 1.53193 * 108.77516 * 233.62852 * 10 9 7 12 12 C 1.53043 * 109.30931 * 305.35962 * 11 10 9 13 13 N 1.46904 * 109.45787 * 181.38475 * 12 11 10 14 14 C 1.46904 * 110.99537 * 155.00305 * 13 12 11 15 15 C 1.53000 * 109.46681 * 179.97438 * 14 13 12 16 16 O 1.42900 * 110.44118 * 300.69991 * 15 14 13 17 17 C 1.54898 * 110.59648 * 63.32169 * 15 14 13 18 18 C 1.54889 * 102.74606 * 156.67434 * 17 15 14 19 19 C 1.54269 * 104.19613 * 322.05390 * 18 17 15 20 20 C 1.53874 * 106.59981 * 23.61351 * 19 18 17 21 21 C 1.53045 * 109.53664 * 61.36729 * 12 11 10 22 22 C 1.46923 * 120.63292 * 28.01569 * 9 7 2 23 23 H 0.97001 * 120.00401 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.59448 * 113.83489 * 10 9 7 25 25 H 1.09010 * 109.70596 * 353.47976 * 10 9 7 26 26 H 1.09002 * 109.49926 * 185.41315 * 11 10 9 27 27 H 1.09001 * 109.52349 * 65.32748 * 11 10 9 28 28 H 1.08998 * 109.46181 * 301.36250 * 12 11 10 29 29 H 1.00903 * 110.99940 * 278.95579 * 13 12 11 30 30 H 1.08998 * 109.47293 * 60.00316 * 14 13 12 31 31 H 1.08992 * 109.47051 * 300.00238 * 14 13 12 32 32 H 0.96706 * 113.99504 * 57.45511 * 16 15 14 33 33 H 1.08995 * 110.75200 * 274.98462 * 17 15 14 34 34 H 1.08998 * 110.75535 * 38.35832 * 17 15 14 35 35 H 1.09002 * 110.48317 * 203.38188 * 18 17 15 36 36 H 1.08997 * 110.48697 * 80.73239 * 18 17 15 37 37 H 1.08995 * 110.03569 * 264.32730 * 19 18 17 38 38 H 1.09000 * 110.02916 * 142.89746 * 19 18 17 39 39 H 1.09000 * 110.03482 * 240.71387 * 20 19 18 40 40 H 1.08995 * 110.03354 * 119.28131 * 20 19 18 41 41 H 1.09002 * 109.49518 * 58.58378 * 21 12 11 42 42 H 1.08994 * 109.49865 * 178.68258 * 21 12 11 43 43 H 1.08996 * 109.58778 * 246.16489 * 22 9 7 44 44 H 1.09005 * 109.58735 * 6.44485 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5880 1.4169 0.6123 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2822 9 7 1.3732 -2.3607 -0.3562 10 6 1.8145 -3.6541 0.1832 11 6 2.0774 -4.6111 -0.9838 12 6 0.8283 -4.6906 -1.8644 13 7 1.0654 -5.6330 -2.9662 14 6 -0.1995 -6.1907 -3.4632 15 6 0.0875 -7.1648 -4.6076 16 8 0.7670 -6.4971 -5.6727 17 6 0.9216 -8.3683 -4.1025 18 6 0.5988 -9.4688 -5.1436 19 6 -0.8976 -9.2648 -5.4581 20 6 -1.2228 -7.7999 -5.1173 21 6 0.5163 -3.3057 -2.4363 22 6 0.2358 -2.3340 -1.2858 23 1 -0.4851 0.8400 -0.0004 24 1 1.0367 -4.0666 0.8259 25 1 2.7305 -3.5192 0.7586 26 1 2.3125 -5.6022 -0.5957 27 1 2.9163 -4.2433 -1.5746 28 1 -0.0159 -5.0351 -1.2671 29 1 1.5849 -5.1943 -3.7117 30 1 -0.8355 -5.3828 -3.8251 31 1 -0.7064 -6.7180 -2.6551 32 1 1.5981 -6.0793 -5.4082 33 1 1.9853 -8.1308 -4.1087 34 1 0.5982 -8.6717 -3.1068 35 1 0.7677 -10.4579 -4.7179 36 1 1.1997 -9.3315 -6.0425 37 1 -1.5024 -9.9336 -4.8458 38 1 -1.0860 -9.4529 -6.5151 39 1 -1.9853 -7.7578 -4.3396 40 1 -1.5689 -7.2771 -6.0088 41 1 1.3699 -2.9497 -3.0133 42 1 -0.3596 -3.3676 -3.0820 43 1 -0.6707 -2.6387 -0.7629 44 1 0.1091 -1.3253 -1.6793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591736051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:35 Heat of formation + Delta-G solvation = -66.680518 kcal Electronic energy + Delta-G solvation = -21427.977750 eV Core-core repulsion = 18378.789769 eV Total energy + Delta-G solvation = -3049.187980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50508 -39.31563 -36.46995 -35.61969 -33.95620 -31.72072 -31.42033 -29.75426 -29.08730 -26.63694 -24.66044 -23.75477 -22.94600 -21.51726 -21.11099 -20.64526 -18.85421 -17.67550 -16.95272 -16.71135 -16.48274 -15.78616 -15.67254 -15.38874 -15.32771 -14.84357 -14.70988 -14.24604 -14.14967 -13.84836 -13.27858 -13.18307 -12.99986 -12.83024 -12.60984 -12.43573 -12.40232 -12.18329 -12.07994 -11.96431 -11.90899 -11.80515 -11.62765 -11.41938 -11.29016 -11.08278 -10.73020 -10.57553 -9.33888 -8.70092 -7.89278 -5.34783 1.45485 1.46830 1.56240 2.49951 3.05697 3.26034 3.27422 3.67664 3.71008 3.82511 3.87957 3.98618 4.15345 4.27233 4.39418 4.47302 4.55956 4.58503 4.60594 4.69269 4.75077 4.80492 4.84800 4.90458 4.94574 5.04490 5.05262 5.10416 5.17752 5.21725 5.25200 5.30678 5.36133 5.41015 5.48286 5.52903 5.62533 5.68731 6.03364 6.37384 6.40757 6.81666 7.12934 7.84683 8.36352 9.16957 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042519 B = 0.003686 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.368103 B = 7594.094775 C = 7769.429351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.139 3.861 11 C -0.102 4.102 12 C 0.108 3.892 13 N -0.671 5.671 14 C 0.039 3.961 15 C 0.131 3.869 16 O -0.570 6.570 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.151 4.151 22 C 0.182 3.818 23 H 0.249 0.751 24 H 0.012 0.988 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.338 0.662 30 H 0.024 0.976 31 H 0.082 0.918 32 H 0.383 0.617 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.055 0.945 43 H -0.007 1.007 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -18.119 -9.906 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.014 3.986 11 C -0.142 4.142 12 C -0.002 4.002 13 N -0.301 5.301 14 C -0.091 4.091 15 C 0.090 3.910 16 O -0.377 6.377 17 C -0.167 4.167 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.191 4.191 22 C 0.055 3.945 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.011 0.989 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.047 -18.763 -9.811 21.173 hybrid contribution 0.101 2.379 0.057 2.382 sum 0.054 -16.384 -9.754 19.068 Atomic orbital electron populations 1.70193 1.06744 1.25820 1.55479 1.25813 0.96031 1.01591 1.01286 0.85251 0.78301 0.79537 0.77374 1.21343 1.22177 1.19084 1.19560 0.93093 0.86168 1.40533 0.91478 1.44333 1.36457 1.02421 1.50221 1.21090 0.97284 0.85825 0.94438 1.21789 0.96845 0.99035 0.96506 1.21275 0.97741 0.88866 0.92319 1.60714 1.19477 1.37681 1.12276 1.22642 0.91557 0.97295 0.97607 1.22115 0.92997 0.90743 0.85115 1.86503 1.40432 1.73613 1.37185 1.22926 1.00169 0.94601 0.98959 1.22345 0.95983 0.98890 0.98767 1.22108 0.96725 0.95281 1.01646 1.22189 0.95426 0.96155 1.01673 1.22632 1.00316 0.97659 0.98530 1.20465 0.87846 0.97393 0.88779 0.94156 0.96984 0.92613 0.90113 0.92717 0.91880 0.84296 0.95782 0.89954 0.76797 0.91096 0.90557 0.90703 0.92163 0.90609 0.91687 0.89763 0.91756 0.92858 0.92675 0.98896 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 11.22 21.65 0.24 -55.96 16 2 C -0.05 -2.94 4.90 84.86 0.42 -2.52 16 3 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.26 -14.66 9.58 84.03 0.81 -13.86 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -31.00 2.99 -699.11 -2.09 -33.09 16 10 C 0.14 5.77 6.51 86.36 0.56 6.34 16 11 C -0.10 -3.35 5.69 30.67 0.17 -3.18 16 12 C 0.11 3.39 2.43 44.94 0.11 3.49 16 13 N -0.67 -16.34 5.96 -491.41 -2.93 -19.27 16 14 C 0.04 0.88 4.56 86.30 0.39 1.27 16 15 C 0.13 2.62 1.00 -9.71 -0.01 2.61 16 16 O -0.57 -12.49 13.03 -148.98 -1.94 -14.44 16 17 C -0.13 -2.30 5.79 31.89 0.18 -2.11 16 18 C -0.12 -1.94 6.81 31.67 0.22 -1.73 16 19 C -0.12 -1.85 6.80 31.32 0.21 -1.64 16 20 C -0.12 -2.14 6.12 31.32 0.19 -1.94 16 21 C -0.15 -5.62 5.33 30.67 0.16 -5.45 16 22 C 0.18 8.90 5.31 86.36 0.46 9.36 16 23 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 24 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 2.26 7.94 -2.38 -0.02 2.24 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 2.09 7.80 -2.39 -0.02 2.07 16 29 H 0.34 7.78 6.89 -89.69 -0.62 7.16 16 30 H 0.02 0.62 7.41 -2.39 -0.02 0.60 16 31 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 32 H 0.38 6.69 7.47 -74.05 -0.55 6.14 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.39 7.84 -2.39 -0.02 1.37 16 40 H 0.06 1.30 8.07 -2.39 -0.02 1.28 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.92 7.42 -2.39 -0.02 1.90 16 43 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.05 2.77 6.06 -2.38 -0.01 2.76 16 Total: -1.00 -63.24 335.58 -1.01 -64.25 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.20 Total: 20.56 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 3.88 Total: -9.36 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -4.78 Total: -108.31 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.94 Total: -14.44 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -63.24 -1.01 -64.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.430 kcal (2) G-P(sol) polarization free energy of solvation -63.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds