Wall clock time and date at job start Mon Mar 30 2020 01:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47063 * 240.00119 * 3 2 1 5 5 H 1.48494 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46709 * 120.00516 * 3 2 1 7 7 C 1.37882 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99632 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.87795 * 62.39327 * 9 7 2 11 11 C 1.55135 * 110.99164 * 298.54420 * 9 7 2 12 12 C 1.54322 * 103.02006 * 206.26016 * 11 9 7 13 13 N 1.47439 * 107.23490 * 22.28319 * 12 11 9 14 14 C 1.46901 * 110.99961 * 123.25626 * 13 12 11 15 15 C 1.53000 * 109.46769 * 69.87863 * 14 13 12 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.46847 * 111.00094 * 294.20476 * 16 15 14 18 18 C 1.53031 * 109.52464 * 174.16319 * 17 16 15 19 19 C 1.53115 * 109.27989 * 59.18135 * 18 17 16 20 20 C 1.53125 * 109.16055 * 302.34629 * 19 18 17 21 21 C 1.46852 * 110.99899 * 169.99926 * 16 15 14 22 22 C 1.47853 * 108.56569 * 0.99003 * 13 12 11 23 23 H 0.97006 * 119.99129 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00144 * 297.60511 * 10 9 7 25 25 H 1.09003 * 110.71015 * 87.87613 * 11 9 7 26 26 H 1.09004 * 110.70681 * 324.63929 * 11 9 7 27 27 H 1.09003 * 109.88473 * 262.87599 * 12 11 9 28 28 H 1.09003 * 110.01953 * 141.76715 * 12 11 9 29 29 H 1.09002 * 109.47401 * 309.87571 * 14 13 12 30 30 H 1.09001 * 109.46874 * 189.87583 * 14 13 12 31 31 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 32 32 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 33 33 H 1.08998 * 109.46358 * 294.18364 * 17 16 15 34 34 H 1.09005 * 109.45980 * 54.15039 * 17 16 15 35 35 H 1.09005 * 109.50318 * 299.23690 * 18 17 16 36 36 H 1.09001 * 109.50382 * 179.12546 * 18 17 16 37 37 H 1.08996 * 109.52552 * 182.44106 * 19 18 17 38 38 H 1.09002 * 109.57420 * 62.28241 * 19 18 17 39 39 H 1.08998 * 109.50035 * 297.70855 * 20 19 18 40 40 H 1.09001 * 109.50070 * 177.59929 * 20 19 18 41 41 H 1.09004 * 109.45871 * 305.85164 * 21 16 15 42 42 H 1.09001 * 109.46483 * 65.82063 * 21 16 15 43 43 H 1.09002 * 110.36766 * 94.73414 * 22 13 12 44 44 H 1.08997 * 110.37443 * 217.07382 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4600 -2.6305 -1.1834 11 6 0.3742 -2.6346 1.2721 12 6 0.2540 -4.1627 1.4505 13 7 1.3921 -4.7761 0.7417 14 6 2.1864 -5.6156 1.6485 15 6 1.3837 -6.8632 2.0228 16 7 2.1778 -7.7023 2.9301 17 6 3.3650 -8.2355 2.2499 18 6 4.2408 -8.9814 3.2591 19 6 3.4326 -10.1218 3.8842 20 6 2.1770 -9.5450 4.5441 21 6 1.3610 -8.7828 3.4977 22 6 2.2185 -3.6986 0.1570 23 1 -0.4849 0.8402 0.0004 24 1 -0.2256 -1.9547 -1.2751 25 1 -0.6069 -2.1867 1.1138 26 1 0.8704 -2.1841 2.1318 27 1 -0.6838 -4.5137 1.0199 28 1 0.2947 -4.4192 2.5092 29 1 2.4239 -5.0521 2.5508 30 1 3.1102 -5.9132 1.1523 31 1 0.4599 -6.5655 2.5190 32 1 1.1461 -7.4266 1.1206 33 1 3.0546 -8.9213 1.4616 34 1 3.9331 -7.4139 1.8135 35 1 4.5630 -8.2928 4.0403 36 1 5.1141 -9.3903 2.7509 37 1 4.0385 -10.6288 4.6351 38 1 3.1434 -10.8319 3.1094 39 1 2.4666 -8.8654 5.3456 40 1 1.5758 -10.3566 4.9540 41 1 0.4735 -8.3587 3.9675 42 1 1.0600 -9.4661 2.7035 43 1 3.0366 -3.4405 0.8295 44 1 2.6068 -4.0031 -0.8149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:59 Heat of formation + Delta-G solvation = -52.049760 kcal Electronic energy + Delta-G solvation = -21333.559337 eV Core-core repulsion = 18285.005794 eV Total energy + Delta-G solvation = -3048.553543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.22274 -38.16849 -35.08325 -33.48918 -32.10479 -31.01128 -30.10358 -28.17118 -27.14363 -24.62954 -23.74531 -23.02992 -21.51021 -19.80285 -19.63458 -19.43312 -17.00430 -16.20511 -15.45526 -15.13614 -14.85641 -14.57472 -14.37217 -14.33067 -13.95615 -13.62546 -13.20621 -12.99645 -12.77931 -12.28347 -12.20912 -11.84733 -11.62968 -11.33079 -11.28704 -11.21689 -10.97277 -10.90599 -10.74289 -10.66920 -10.46200 -10.43699 -10.21146 -10.18795 -9.77710 -9.14596 -8.56886 -8.30745 -8.05014 -7.55362 -6.18544 -4.26688 3.25205 3.29944 3.32943 3.79823 4.31744 4.64614 4.70987 4.75521 4.90432 5.05699 5.10867 5.21729 5.33769 5.39715 5.44825 5.49541 5.62640 5.71542 5.74994 5.77280 5.82471 5.89764 5.97133 5.98839 6.00440 6.04912 6.18516 6.21204 6.27975 6.32733 6.52042 6.71290 6.90816 7.08697 7.10716 7.13528 7.45902 7.52517 7.68371 7.82399 7.87582 8.20344 8.75327 9.41766 9.55114 10.88326 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.003650 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.656242 B = 7668.652181 C = 7898.159176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.579 6.579 11 C -0.143 4.143 12 C 0.043 3.957 13 N -0.530 5.530 14 C 0.056 3.944 15 C 0.063 3.937 16 N -0.540 5.540 17 C 0.052 3.948 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.057 3.943 22 C 0.061 3.939 23 H 0.266 0.734 24 H 0.376 0.624 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -15.899 7.451 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.211 3.789 10 O -0.387 6.387 11 C -0.183 4.183 12 C -0.085 4.085 13 N -0.254 5.254 14 C -0.073 4.073 15 C -0.065 4.065 16 N -0.265 5.265 17 C -0.076 4.076 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.066 4.066 23 H 0.076 0.924 24 H 0.225 0.775 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.676 -16.336 7.350 18.287 hybrid contribution 0.076 1.440 0.173 1.453 sum 3.752 -14.896 7.523 17.105 Atomic orbital electron populations 1.69738 1.05925 1.27437 1.50311 1.25000 0.94986 0.99378 0.93713 0.86539 0.79590 0.82425 0.78753 1.20052 1.21161 1.20188 1.21518 0.93500 0.90766 1.51732 0.92196 1.19522 0.86861 0.90565 0.81920 1.86141 1.51335 1.56644 1.44553 1.23244 1.02562 0.91925 1.00524 1.22861 0.94259 0.96220 0.95153 1.63518 1.09147 1.21489 1.31266 1.22166 0.96059 0.93871 0.95217 1.22048 0.96240 0.93858 0.94354 1.61863 1.07949 1.20920 1.35764 1.22144 0.92195 0.98240 0.95026 1.21590 0.97558 0.97292 0.99050 1.21577 0.96857 0.97636 0.99805 1.21583 0.96439 0.99142 0.98261 1.22052 0.95943 0.92324 0.96826 1.22967 0.95150 0.90327 0.98170 0.92363 0.77477 0.90503 0.92680 0.91936 0.94412 0.94359 0.91627 0.90876 0.94199 0.95060 0.90320 0.91111 0.91748 0.92043 0.92450 0.91114 0.91804 0.90867 0.95136 0.93564 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 10.75 55.43 0.60 -23.49 16 2 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.57 8.27 -34.44 -0.28 -14.86 16 8 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 9 C 0.25 6.36 0.87 -89.64 -0.08 6.28 16 10 O -0.58 -15.41 13.16 -35.23 -0.46 -15.87 16 11 C -0.14 -3.37 5.37 -24.91 -0.13 -3.50 16 12 C 0.04 0.86 6.21 -2.84 -0.02 0.84 16 13 N -0.53 -10.55 5.16 -231.24 -1.19 -11.75 16 14 C 0.06 0.93 4.46 -3.82 -0.02 0.91 16 15 C 0.06 0.91 4.99 -3.82 -0.02 0.89 16 16 N -0.54 -6.84 4.66 -234.67 -1.09 -7.93 16 17 C 0.05 0.60 5.29 -3.84 -0.02 0.58 16 18 C -0.12 -1.12 6.09 -26.66 -0.16 -1.28 16 19 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 21 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 22 C 0.06 1.36 5.86 -2.29 -0.01 1.35 16 23 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.38 10.03 7.56 45.56 0.34 10.37 16 25 H 0.08 1.91 7.54 -51.93 -0.39 1.51 16 26 H 0.05 1.33 8.03 -51.93 -0.42 0.91 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.04 0.69 6.91 -51.93 -0.36 0.33 16 29 H 0.04 0.67 7.96 -51.93 -0.41 0.26 16 30 H 0.07 1.04 6.36 -51.93 -0.33 0.71 16 31 H 0.07 1.07 6.98 -51.93 -0.36 0.71 16 32 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.95 6.21 -51.93 -0.32 0.62 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 44 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -27.52 333.75 -10.59 -38.11 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.26 Total: 8.92 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.18 Total: -8.81 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -1.69 Total: -43.17 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.46 Total: -15.87 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.52 -10.59 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.940 kcal (2) G-P(sol) polarization free energy of solvation -27.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds