Wall clock time and date at job start Mon Mar 30 2020 01:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47063 * 240.00119 * 3 2 1 5 5 H 1.48494 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46709 * 120.00516 * 3 2 1 7 7 C 1.37882 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99632 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.87795 * 62.39327 * 9 7 2 11 11 C 1.55135 * 110.99164 * 298.54420 * 9 7 2 12 12 C 1.54322 * 103.02006 * 206.26016 * 11 9 7 13 13 N 1.47439 * 107.23490 * 22.28319 * 12 11 9 14 14 C 1.46901 * 110.99961 * 123.25626 * 13 12 11 15 15 C 1.53000 * 109.46769 * 69.87863 * 14 13 12 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.46847 * 111.00094 * 294.20476 * 16 15 14 18 18 C 1.53031 * 109.52464 * 174.16319 * 17 16 15 19 19 C 1.53115 * 109.27989 * 59.18135 * 18 17 16 20 20 C 1.53125 * 109.16055 * 302.34629 * 19 18 17 21 21 C 1.46852 * 110.99899 * 169.99926 * 16 15 14 22 22 C 1.47853 * 108.56569 * 0.99003 * 13 12 11 23 23 H 0.97006 * 119.99129 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00144 * 297.60511 * 10 9 7 25 25 H 1.09003 * 110.71015 * 87.87613 * 11 9 7 26 26 H 1.09004 * 110.70681 * 324.63929 * 11 9 7 27 27 H 1.09003 * 109.88473 * 262.87599 * 12 11 9 28 28 H 1.09003 * 110.01953 * 141.76715 * 12 11 9 29 29 H 1.09002 * 109.47401 * 309.87571 * 14 13 12 30 30 H 1.09001 * 109.46874 * 189.87583 * 14 13 12 31 31 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 32 32 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 33 33 H 1.08998 * 109.46358 * 294.18364 * 17 16 15 34 34 H 1.09005 * 109.45980 * 54.15039 * 17 16 15 35 35 H 1.09005 * 109.50318 * 299.23690 * 18 17 16 36 36 H 1.09001 * 109.50382 * 179.12546 * 18 17 16 37 37 H 1.08996 * 109.52552 * 182.44106 * 19 18 17 38 38 H 1.09002 * 109.57420 * 62.28241 * 19 18 17 39 39 H 1.08998 * 109.50035 * 297.70855 * 20 19 18 40 40 H 1.09001 * 109.50070 * 177.59929 * 20 19 18 41 41 H 1.09004 * 109.45871 * 305.85164 * 21 16 15 42 42 H 1.09001 * 109.46483 * 65.82063 * 21 16 15 43 43 H 1.09002 * 110.36766 * 94.73414 * 22 13 12 44 44 H 1.08997 * 110.37443 * 217.07382 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.4600 -2.6305 -1.1834 11 6 0.3742 -2.6346 1.2721 12 6 0.2540 -4.1627 1.4505 13 7 1.3921 -4.7761 0.7417 14 6 2.1864 -5.6156 1.6485 15 6 1.3837 -6.8632 2.0228 16 7 2.1778 -7.7023 2.9301 17 6 3.3650 -8.2355 2.2499 18 6 4.2408 -8.9814 3.2591 19 6 3.4326 -10.1218 3.8842 20 6 2.1770 -9.5450 4.5441 21 6 1.3610 -8.7828 3.4977 22 6 2.2185 -3.6986 0.1570 23 1 -0.4849 0.8402 0.0004 24 1 -0.2256 -1.9547 -1.2751 25 1 -0.6069 -2.1867 1.1138 26 1 0.8704 -2.1841 2.1318 27 1 -0.6838 -4.5137 1.0199 28 1 0.2947 -4.4192 2.5092 29 1 2.4239 -5.0521 2.5508 30 1 3.1102 -5.9132 1.1523 31 1 0.4599 -6.5655 2.5190 32 1 1.1461 -7.4266 1.1206 33 1 3.0546 -8.9213 1.4616 34 1 3.9331 -7.4139 1.8135 35 1 4.5630 -8.2928 4.0403 36 1 5.1141 -9.3903 2.7509 37 1 4.0385 -10.6288 4.6351 38 1 3.1434 -10.8319 3.1094 39 1 2.4666 -8.8654 5.3456 40 1 1.5758 -10.3566 4.9540 41 1 0.4735 -8.3587 3.9675 42 1 1.0600 -9.4661 2.7035 43 1 3.0366 -3.4405 0.8295 44 1 2.6068 -4.0031 -0.8149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:59 Heat of formation + Delta-G solvation = -71.672457 kcal Electronic energy + Delta-G solvation = -21334.410241 eV Core-core repulsion = 18285.005794 eV Total energy + Delta-G solvation = -3049.404447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43327 -39.61833 -36.76764 -34.65593 -34.18155 -31.94606 -31.54168 -29.95978 -28.65867 -26.31350 -24.97425 -23.89156 -22.81472 -21.41468 -21.12175 -20.59006 -19.00945 -17.32014 -17.02537 -16.83967 -16.42365 -15.77531 -15.71027 -15.41128 -15.31808 -14.82542 -14.40713 -14.32583 -14.16857 -13.68691 -13.62059 -13.35610 -13.17597 -12.94993 -12.92560 -12.64023 -12.49546 -12.27782 -12.14340 -12.08951 -11.99023 -11.65644 -11.55403 -11.25779 -11.16361 -11.02772 -10.59814 -10.08376 -9.30669 -9.16943 -8.21748 -6.37842 1.41279 1.42291 1.50042 2.37669 2.72233 3.02757 3.38818 3.80310 3.91185 3.96545 4.04848 4.07181 4.09958 4.24890 4.31817 4.38426 4.43571 4.49872 4.55601 4.64971 4.68117 4.74186 4.81627 4.87910 4.90761 4.96515 5.00569 5.06709 5.08759 5.11759 5.24319 5.27785 5.31031 5.48286 5.49783 5.54260 5.79369 5.94719 6.05205 6.17646 6.22377 6.33961 6.67435 7.33598 7.45203 8.83360 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.003650 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.656242 B = 7668.652181 C = 7898.159176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.565 4.565 8 H 0.054 0.946 9 C 0.234 3.766 10 O -0.587 6.587 11 C -0.134 4.134 12 C 0.053 3.947 13 N -0.533 5.533 14 C 0.060 3.940 15 C 0.074 3.926 16 N -0.547 5.547 17 C 0.049 3.951 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.113 4.113 21 C 0.054 3.946 22 C 0.069 3.931 23 H 0.269 0.731 24 H 0.372 0.628 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.049 0.951 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -16.992 8.414 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.603 4.603 8 H 0.072 0.928 9 C 0.194 3.806 10 O -0.395 6.395 11 C -0.174 4.174 12 C -0.074 4.074 13 N -0.257 5.257 14 C -0.068 4.068 15 C -0.054 4.054 16 N -0.272 5.272 17 C -0.079 4.079 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.074 4.074 22 C -0.059 4.059 23 H 0.078 0.922 24 H 0.220 0.780 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.295 -17.453 8.323 19.807 hybrid contribution -0.116 1.761 -0.133 1.769 sum 4.179 -15.692 8.189 18.187 Atomic orbital electron populations 1.69825 1.06828 1.28187 1.50059 1.25700 0.95851 1.02262 0.93195 0.85590 0.78463 0.78717 0.78710 1.19946 1.20506 1.19704 1.21796 0.93508 0.92210 1.52777 0.92793 1.19772 0.87509 0.91287 0.82021 1.86131 1.51363 1.56450 1.45538 1.23046 1.00907 0.94226 0.99193 1.22755 0.94534 0.93661 0.96488 1.63489 1.09187 1.20671 1.32398 1.22187 0.96318 0.94045 0.94259 1.21846 0.95956 0.93110 0.94509 1.61879 1.08293 1.21820 1.35254 1.22199 0.91955 0.98094 0.95616 1.21581 0.97783 0.97361 0.98467 1.21582 0.96652 0.97269 1.00201 1.21578 0.96695 0.99327 0.97483 1.22148 0.96124 0.91910 0.97233 1.22805 0.94816 0.90012 0.98241 0.92192 0.78013 0.92341 0.93920 0.91647 0.92326 0.94957 0.90960 0.91020 0.94773 0.95134 0.91236 0.91756 0.90402 0.90561 0.92130 0.91709 0.90040 0.90783 0.95033 0.93304 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 10.75 21.45 0.23 -49.04 16 2 C 0.03 1.65 5.29 84.66 0.45 2.10 16 3 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.56 -30.97 8.27 25.60 0.21 -30.76 16 8 H 0.05 2.94 7.79 -2.91 -0.02 2.91 16 9 C 0.23 11.96 0.87 -10.16 -0.01 11.96 16 10 O -0.59 -31.73 13.16 -148.98 -1.96 -33.69 16 11 C -0.13 -6.37 5.37 31.77 0.17 -6.20 16 12 C 0.05 2.10 6.21 86.65 0.54 2.64 16 13 N -0.53 -20.86 5.16 -885.51 -4.57 -25.43 16 14 C 0.06 1.94 4.46 86.30 0.39 2.32 16 15 C 0.07 2.04 4.99 86.30 0.43 2.47 16 16 N -0.55 -13.04 4.66 -896.36 -4.17 -17.21 16 17 C 0.05 1.06 5.29 86.32 0.46 1.51 16 18 C -0.11 -1.95 6.09 30.64 0.19 -1.76 16 19 C -0.12 -1.75 6.00 30.67 0.18 -1.56 16 20 C -0.11 -1.78 6.09 30.65 0.19 -1.59 16 21 C 0.05 1.05 5.46 86.32 0.47 1.53 16 22 C 0.07 3.08 5.86 86.77 0.51 3.59 16 23 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 24 H 0.37 20.28 7.56 -74.06 -0.56 19.72 16 25 H 0.06 2.94 7.54 -2.39 -0.02 2.93 16 26 H 0.04 2.08 8.03 -2.39 -0.02 2.06 16 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.06 2.07 6.91 -2.39 -0.02 2.05 16 29 H 0.03 1.09 7.96 -2.39 -0.02 1.07 16 30 H 0.07 2.23 6.36 -2.39 -0.02 2.21 16 31 H 0.07 1.99 6.98 -2.39 -0.02 1.97 16 32 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 1.60 6.21 -2.38 -0.01 1.58 16 35 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.43 8.02 -2.39 -0.02 1.41 16 42 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 2.13 7.70 -2.39 -0.02 2.11 16 44 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -57.66 333.75 -3.88 -61.54 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.40 Total: 33.04 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 4.17 Total: -13.77 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -8.51 Total: -91.68 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.96 Total: -33.69 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -57.66 -3.88 -61.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.131 kcal (2) G-P(sol) polarization free energy of solvation -57.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds