Wall clock time and date at job start Mon Mar 30 2020 01:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48506 * 109.46918 * 269.99584 * 3 2 1 5 5 H 1.48497 * 109.47517 * 29.99342 * 3 2 1 6 6 H 1.48492 * 109.47307 * 149.99838 * 3 2 1 7 7 C 1.37880 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46859 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46705 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99799 * 180.02562 * 11 10 9 13 13 C 1.53113 * 109.52291 * 204.99950 * 12 11 10 14 14 C 1.53036 * 109.28283 * 182.43935 * 13 12 11 15 15 N 1.46848 * 109.52098 * 59.17721 * 14 13 12 16 16 C 1.46899 * 111.00098 * 174.16555 * 15 14 13 17 17 H 1.08994 * 110.45930 * 58.48453 * 16 15 14 18 18 C 1.54509 * 110.51227 * 181.09411 * 16 15 14 19 19 C 1.54475 * 104.06490 * 118.78140 * 18 16 15 20 20 O 1.44427 * 104.80473 * 23.97837 * 19 18 16 21 21 C 1.44429 * 105.27176 * 319.48865 * 20 19 18 22 22 C 1.46850 * 111.19670 * 298.26182 * 15 14 13 23 23 C 1.53032 * 109.52512 * 61.74491 * 22 15 14 24 24 H 0.96998 * 120.00140 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47486 * 59.99873 * 9 7 2 26 26 H 1.09004 * 109.47134 * 300.00108 * 9 7 2 27 27 H 1.08997 * 109.47342 * 60.00438 * 10 9 7 28 28 H 1.08995 * 109.47221 * 299.99879 * 10 9 7 29 29 H 1.00897 * 111.00305 * 303.94799 * 11 10 9 30 30 H 1.08997 * 109.52087 * 325.12430 * 12 11 10 31 31 H 1.09007 * 109.50501 * 62.49609 * 13 12 11 32 32 H 1.09002 * 109.50666 * 302.38130 * 13 12 11 33 33 H 1.09001 * 109.45983 * 299.16591 * 14 13 12 34 34 H 1.08997 * 109.46706 * 179.19621 * 14 13 12 35 35 H 1.09000 * 110.50922 * 237.42542 * 18 16 15 36 36 H 1.08999 * 110.51183 * 359.97438 * 18 16 15 37 37 H 1.09003 * 110.37531 * 142.80950 * 19 18 16 38 38 H 1.09007 * 110.37213 * 265.03679 * 19 18 16 39 39 H 1.09004 * 110.37219 * 281.67722 * 21 20 19 40 40 H 1.08994 * 110.36962 * 159.34425 * 21 20 19 41 41 H 1.09008 * 109.45722 * 181.75565 * 22 15 14 42 42 H 1.08997 * 109.46173 * 301.72186 * 22 15 14 43 43 H 1.08997 * 109.50469 * 180.87691 * 23 22 15 44 44 H 1.09005 * 109.53932 * 60.77526 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0030 13 6 1.7416 -7.2969 -0.6074 14 6 2.6878 -8.4982 -0.5473 15 7 3.0513 -8.7670 0.8498 16 6 3.8475 -9.9967 0.9594 17 1 4.7534 -9.9188 0.3584 18 6 4.2005 -10.2834 2.4361 19 6 3.5397 -11.6502 2.7215 20 8 3.4192 -12.2793 1.4270 21 6 3.0151 -11.2242 0.5273 22 6 3.7608 -7.6262 1.4428 23 6 2.8466 -6.3989 1.4421 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8711 -3.6040 0.8923 28 1 2.8725 -3.6048 -0.8877 29 1 0.8734 -4.9843 0.7819 30 1 3.3202 -5.8289 -0.5832 31 1 1.4842 -7.0880 -1.6459 32 1 0.8348 -7.5195 -0.0450 33 1 3.5883 -8.2802 -1.1214 34 1 2.1917 -9.3727 -0.9682 35 1 5.2809 -10.3472 2.5650 36 1 3.7846 -9.5124 3.0848 37 1 4.1729 -12.2484 3.3767 38 1 2.5561 -11.5099 3.1700 39 1 1.9504 -11.0186 0.6375 40 1 3.2454 -11.4952 -0.5030 41 1 4.0440 -7.8674 2.4674 42 1 4.6563 -7.4124 0.8594 43 1 3.3788 -5.5484 1.8680 44 1 1.9571 -6.6066 2.0370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594501985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:24 Heat of formation + Delta-G solvation = -52.271845 kcal Electronic energy + Delta-G solvation = -20769.459405 eV Core-core repulsion = 17720.896232 eV Total energy + Delta-G solvation = -3048.563173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24654 -38.52210 -35.89366 -33.45876 -32.18690 -31.14627 -30.37118 -29.01490 -27.53857 -24.44344 -23.80482 -22.64413 -22.18516 -20.70548 -20.55053 -19.66612 -17.19104 -16.69434 -16.31187 -15.75287 -15.24286 -14.85035 -14.56061 -14.43601 -14.38420 -14.11172 -13.79451 -13.15071 -13.09706 -12.64344 -12.44636 -12.33217 -12.08823 -11.67420 -11.43957 -11.29334 -11.18690 -11.08009 -10.99630 -10.92108 -10.64038 -10.53986 -10.35295 -10.08044 -9.97421 -9.33953 -9.13771 -8.55634 -8.35544 -7.75992 -5.99920 -4.02547 3.31595 3.37688 3.40663 3.44776 3.82276 4.19399 4.41896 4.50760 4.63153 4.68226 4.78330 4.89075 4.97830 5.05070 5.16741 5.19684 5.33251 5.35969 5.39352 5.42266 5.49959 5.53036 5.55553 5.58590 5.68014 5.71778 5.82301 5.95787 6.04736 6.25377 6.34167 6.38613 6.42239 6.47734 6.88863 6.91323 6.98312 7.51118 7.73866 7.83643 7.97679 8.09310 8.43725 9.04837 9.61190 11.11534 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051784 B = 0.002870 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.575425 B = 9753.797499 C = 9981.015009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.686 5.686 12 C 0.086 3.914 13 C -0.103 4.103 14 C 0.054 3.946 15 N -0.528 5.528 16 C 0.050 3.950 17 H 0.053 0.947 18 C -0.153 4.153 19 C 0.049 3.951 20 O -0.378 6.378 21 C 0.053 3.947 22 C 0.058 3.942 23 C -0.146 4.146 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.337 0.663 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -22.288 3.539 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.315 5.315 12 C -0.025 4.025 13 C -0.141 4.141 14 C -0.074 4.074 15 N -0.254 5.254 16 C -0.059 4.059 17 H 0.071 0.929 18 C -0.191 4.191 19 C -0.028 4.028 20 O -0.296 6.296 21 C -0.024 4.024 22 C -0.070 4.070 23 C -0.185 4.185 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.852 -22.450 3.054 23.670 hybrid contribution 1.568 1.432 0.543 2.191 sum 8.419 -21.018 3.597 22.925 Atomic orbital electron populations 1.69971 1.06028 1.26589 1.50648 1.25005 0.94843 0.99211 0.95320 0.86592 0.79785 0.83481 0.78118 1.20631 1.21204 1.19952 1.21178 0.92944 0.91064 1.50867 0.92830 1.19066 0.94030 0.90450 0.97685 1.22169 0.96965 0.88606 0.98415 1.60684 1.19207 1.01880 1.49739 1.21599 0.95298 0.91530 0.94063 1.21560 0.98355 0.92429 1.01771 1.22160 0.98501 0.98995 0.87702 1.62069 1.42790 1.02224 1.18316 1.22994 0.95270 0.91134 0.96529 0.92867 1.23083 1.01338 0.98470 0.96195 1.23367 1.00272 0.92797 0.86366 1.89121 1.89596 1.32069 1.18830 1.23467 0.99084 0.85601 0.94231 1.22092 0.95069 0.90331 0.99479 1.22352 1.00303 0.96564 0.99288 0.92982 0.95692 0.96835 0.96721 0.92580 0.84514 0.91342 0.90776 0.91101 0.94872 0.90713 0.90733 0.89157 0.89273 0.91907 0.90860 0.89311 0.90655 0.94940 0.91395 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 11 N -0.69 -12.05 6.26 -106.59 -0.67 -12.72 16 12 C 0.09 1.21 2.53 -67.59 -0.17 1.04 16 13 C -0.10 -1.25 5.70 -26.65 -0.15 -1.40 16 14 C 0.05 0.56 5.33 -3.83 -0.02 0.54 16 15 N -0.53 -5.34 4.47 -224.82 -1.00 -6.34 16 16 C 0.05 0.45 2.83 -66.14 -0.19 0.26 16 17 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.15 -1.21 6.16 -25.17 -0.16 -1.37 16 19 C 0.05 0.39 7.63 37.93 0.29 0.68 16 20 O -0.38 -3.94 11.65 -35.23 -0.41 -4.35 16 21 C 0.05 0.48 6.08 37.93 0.23 0.71 16 22 C 0.06 0.62 5.19 -3.83 -0.02 0.60 16 23 C -0.15 -1.82 5.35 -26.65 -0.14 -1.96 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.01 0.30 7.51 -51.93 -0.39 -0.09 16 28 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 29 H 0.34 5.80 8.44 -39.29 -0.33 5.47 16 30 H 0.07 1.02 7.80 -51.93 -0.41 0.62 16 31 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.67 7.06 -51.93 -0.37 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.72 6.27 -51.93 -0.33 0.40 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.72 6.01 -51.92 -0.31 0.40 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.91 7.54 -51.93 -0.39 0.52 16 44 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -30.32 338.95 -10.13 -40.45 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.97 Total: 0.10 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.91 Total: -12.64 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.93 Total: -45.38 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.41 Total: -4.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.32 -10.13 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594501985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.818 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds