Wall clock time and date at job start Mon Mar 30 2020 00:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00303 * 2 1 4 4 C 1.52994 * 109.47311 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47252 * 65.00575 * 4 3 2 6 6 C 1.46894 * 111.00290 * 66.04157 * 5 4 3 7 7 C 1.46902 * 110.99793 * 190.00239 * 5 4 3 8 8 C 1.50706 * 109.46736 * 169.99605 * 7 5 4 9 9 C 1.35353 * 126.75076 * 94.99777 * 8 7 5 10 10 N 1.35309 * 106.17498 * 179.97438 * 9 8 7 11 11 C 1.46499 * 125.87027 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47215 * 124.97307 * 11 10 9 13 13 C 1.50701 * 109.47206 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00015 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46990 * 60.00202 * 17 15 13 19 19 H 1.48497 * 109.46746 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47164 * 300.00016 * 17 15 13 21 21 N 1.28714 * 108.26535 * 359.97438 * 10 9 8 22 22 N 1.28637 * 110.18046 * 0.02562 * 21 10 9 23 23 H 1.09002 * 109.47011 * 300.00342 * 1 2 3 24 24 H 1.09002 * 109.47024 * 59.99354 * 1 2 3 25 25 H 1.08995 * 109.47628 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46794 * 59.99793 * 3 2 1 27 27 H 1.09006 * 109.47412 * 300.00340 * 3 2 1 28 28 H 1.08995 * 109.47492 * 305.00128 * 4 3 2 29 29 H 1.09004 * 109.47063 * 185.00377 * 4 3 2 30 30 H 1.08999 * 109.47185 * 183.95480 * 6 5 4 31 31 H 1.08992 * 109.47509 * 303.95911 * 6 5 4 32 32 H 1.09006 * 109.46834 * 63.96203 * 6 5 4 33 33 H 1.08998 * 109.47600 * 49.99756 * 7 5 4 34 34 H 1.08994 * 109.46947 * 289.99281 * 7 5 4 35 35 H 1.08002 * 126.91189 * 359.97438 * 9 8 7 36 36 H 1.08997 * 109.47592 * 244.97299 * 11 10 9 37 37 H 1.09007 * 109.46901 * 4.97623 * 11 10 9 38 38 H 1.09001 * 109.47531 * 300.00255 * 12 11 10 39 39 H 1.09007 * 109.46928 * 60.00332 * 12 11 10 40 40 H 0.96999 * 119.99613 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5628 -1.2562 6 6 3.6949 1.4356 -2.4036 7 6 5.4026 0.2137 -1.1980 8 6 5.7611 -0.6349 -2.3907 9 6 6.2841 -0.2050 -3.5627 10 7 6.4411 -1.3069 -4.3321 11 6 6.9779 -1.3328 -5.6950 12 6 8.1544 -2.3087 -5.7613 13 6 8.7070 -2.3349 -7.1630 14 1 8.2637 -1.7170 -7.9299 15 6 9.7786 -3.1478 -7.4666 16 7 10.3181 -3.9006 -6.5329 17 14 10.4640 -3.1797 -9.2040 18 1 10.9281 -1.8197 -9.5781 19 1 11.6058 -4.1270 -9.2683 20 1 9.4033 -3.6175 -10.1466 21 7 6.0377 -2.3284 -3.6609 22 7 5.6258 -1.9614 -2.4989 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8409 29 1 3.9785 2.1765 0.0890 30 1 3.9671 0.9225 -3.3260 31 1 2.6326 1.6787 -2.4229 32 1 4.2761 2.3534 -2.3134 33 1 5.6034 -0.3429 -0.2825 34 1 6.0004 1.1250 -1.2076 35 1 6.5272 0.8128 -3.8299 36 1 6.1992 -1.6552 -6.3862 37 1 7.3179 -0.3345 -5.9706 38 1 8.9332 -1.9865 -5.0701 39 1 7.8144 -3.3070 -5.4856 40 1 11.0717 -4.4727 -6.7465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594650403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:46 Heat of formation + Delta-G solvation = 54.371046 kcal Electronic energy + Delta-G solvation = -20001.828390 eV Core-core repulsion = 16854.349256 eV Total energy + Delta-G solvation = -3147.479134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.69756 -38.58538 -36.96285 -34.95957 -32.86581 -31.69684 -29.95923 -29.51026 -27.50257 -26.47034 -25.47834 -24.42290 -22.37719 -21.42868 -21.07822 -19.83138 -17.05999 -16.72681 -16.65087 -16.02745 -15.70898 -15.40075 -15.09091 -14.86225 -14.55776 -14.33871 -13.90942 -13.49758 -12.92783 -12.71742 -12.40734 -12.37051 -11.95979 -11.78978 -11.63927 -11.52014 -11.16110 -11.10853 -10.94927 -10.83617 -10.48663 -10.22249 -9.98901 -9.78369 -9.43628 -9.23178 -8.79273 -8.51290 -8.31656 -6.15458 -4.22372 2.15561 2.91959 3.05828 3.24972 3.30644 3.32216 3.63463 3.98965 4.33607 4.64134 4.78907 4.91432 5.02672 5.08124 5.12931 5.16573 5.20573 5.22613 5.27194 5.30553 5.40973 5.48157 5.53032 5.58821 5.65847 5.83921 5.88952 5.93414 6.23733 6.42338 6.56918 6.91340 6.95460 7.10298 7.12519 7.42407 7.52554 7.79929 8.11764 8.82737 9.12708 9.42972 10.95558 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.047580 B = 0.002916 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.345307 B = 9599.798304 C = 9622.210858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.065 3.935 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.021 3.979 7 C 0.148 3.852 8 C -0.026 4.026 9 C -0.057 4.057 10 N -0.270 5.270 11 C 0.112 3.888 12 C 0.015 3.985 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 N -0.074 5.074 22 N -0.268 5.268 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.179 0.821 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.023 0.977 39 H 0.038 0.962 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 14.793 11.309 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.127 4.127 7 C 0.019 3.981 8 C -0.166 4.166 9 C -0.210 4.210 10 N -0.063 5.063 11 C -0.007 4.007 12 C -0.022 4.022 13 C -0.572 4.572 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.524 5.524 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.054 5.054 22 N -0.133 5.133 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.196 0.804 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.784 12.502 11.231 22.383 hybrid contribution 0.918 2.171 -1.081 2.593 sum -13.866 14.673 10.150 22.596 Atomic orbital electron populations 1.22719 0.81792 1.02726 0.99352 1.88060 1.18768 1.26912 1.95163 1.22580 0.93564 0.85417 0.99686 1.22133 0.93685 0.98078 0.93244 1.61798 1.17404 1.43446 1.02478 1.22458 1.00970 0.94509 0.94730 1.20138 0.87145 0.95878 0.94918 1.21525 1.06204 0.92374 0.96525 1.23301 1.09424 0.94832 0.93451 1.47904 1.38674 1.04606 1.15100 1.22714 0.99385 1.04087 0.74506 1.19395 0.90269 0.94322 0.98251 1.20905 1.15801 1.26032 0.94434 0.92191 1.25005 0.96473 0.95036 0.97553 1.69968 1.23586 1.25787 1.33022 0.86535 0.78620 0.77973 0.84174 1.20112 1.21109 1.20002 1.78358 1.14164 1.13048 0.99858 1.75050 1.16928 1.11086 1.10261 0.94579 0.94431 0.89675 0.93227 0.93312 0.89565 0.93335 0.91090 0.91616 0.95733 0.89095 0.93359 0.80395 0.89259 0.88923 0.95851 0.94367 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.40 10.65 -35.23 -0.38 -4.78 16 3 C 0.06 0.58 6.00 37.15 0.22 0.80 16 4 C 0.06 0.53 5.34 -3.83 -0.02 0.51 16 5 N -0.53 -6.39 4.70 -244.38 -1.15 -7.54 16 6 C 0.02 0.23 9.13 60.06 0.55 0.78 16 7 C 0.15 1.87 5.53 -4.97 -0.03 1.85 16 8 C -0.03 -0.43 5.97 -82.77 -0.49 -0.93 16 9 C -0.06 -0.90 10.52 -17.05 -0.18 -1.08 16 10 N -0.27 -5.23 3.44 -61.26 -0.21 -5.44 16 11 C 0.11 2.18 6.39 -4.04 -0.03 2.15 16 12 C 0.02 0.39 5.10 -27.88 -0.14 0.25 16 13 C -0.53 -14.25 9.11 -34.44 -0.31 -14.56 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 17 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 N -0.07 -1.64 12.91 60.35 0.78 -0.86 16 22 N -0.27 -5.55 12.41 33.29 0.41 -5.13 16 23 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 6.26 -51.93 -0.33 0.08 16 28 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 29 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 31 H 0.07 0.63 6.20 -51.93 -0.32 0.31 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.18 2.10 8.06 -52.49 -0.42 1.67 16 36 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 1.07 8.12 -51.93 -0.42 0.64 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -33.11 336.24 -5.60 -38.71 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -6.42 Total: -3.15 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 0.58 Total: -7.24 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.57 Total: -44.44 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.38 Total: -4.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.11 -5.60 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.081 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds