Wall clock time and date at job start Mon Mar 30 2020 00:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00303 * 2 1 4 4 C 1.52994 * 109.47311 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47252 * 65.00575 * 4 3 2 6 6 C 1.46894 * 111.00290 * 66.04157 * 5 4 3 7 7 C 1.46902 * 110.99793 * 190.00239 * 5 4 3 8 8 C 1.50706 * 109.46736 * 169.99605 * 7 5 4 9 9 C 1.35353 * 126.75076 * 94.99777 * 8 7 5 10 10 N 1.35309 * 106.17498 * 179.97438 * 9 8 7 11 11 C 1.46499 * 125.87027 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47215 * 124.97307 * 11 10 9 13 13 C 1.50701 * 109.47206 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00015 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99708 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46990 * 60.00202 * 17 15 13 19 19 H 1.48497 * 109.46746 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47164 * 300.00016 * 17 15 13 21 21 N 1.28714 * 108.26535 * 359.97438 * 10 9 8 22 22 N 1.28637 * 110.18046 * 0.02562 * 21 10 9 23 23 H 1.09002 * 109.47011 * 300.00342 * 1 2 3 24 24 H 1.09002 * 109.47024 * 59.99354 * 1 2 3 25 25 H 1.08995 * 109.47628 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46794 * 59.99793 * 3 2 1 27 27 H 1.09006 * 109.47412 * 300.00340 * 3 2 1 28 28 H 1.08995 * 109.47492 * 305.00128 * 4 3 2 29 29 H 1.09004 * 109.47063 * 185.00377 * 4 3 2 30 30 H 1.08999 * 109.47185 * 183.95480 * 6 5 4 31 31 H 1.08992 * 109.47509 * 303.95911 * 6 5 4 32 32 H 1.09006 * 109.46834 * 63.96203 * 6 5 4 33 33 H 1.08998 * 109.47600 * 49.99756 * 7 5 4 34 34 H 1.08994 * 109.46947 * 289.99281 * 7 5 4 35 35 H 1.08002 * 126.91189 * 359.97438 * 9 8 7 36 36 H 1.08997 * 109.47592 * 244.97299 * 11 10 9 37 37 H 1.09007 * 109.46901 * 4.97623 * 11 10 9 38 38 H 1.09001 * 109.47531 * 300.00255 * 12 11 10 39 39 H 1.09007 * 109.46928 * 60.00332 * 12 11 10 40 40 H 0.96999 * 119.99613 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9768 0.5628 -1.2562 6 6 3.6949 1.4356 -2.4036 7 6 5.4026 0.2137 -1.1980 8 6 5.7611 -0.6349 -2.3907 9 6 6.2841 -0.2050 -3.5627 10 7 6.4411 -1.3069 -4.3321 11 6 6.9779 -1.3328 -5.6950 12 6 8.1544 -2.3087 -5.7613 13 6 8.7070 -2.3349 -7.1630 14 1 8.2637 -1.7170 -7.9299 15 6 9.7786 -3.1478 -7.4666 16 7 10.3181 -3.9006 -6.5329 17 14 10.4640 -3.1797 -9.2040 18 1 10.9281 -1.8197 -9.5781 19 1 11.6058 -4.1270 -9.2683 20 1 9.4033 -3.6175 -10.1466 21 7 6.0377 -2.3284 -3.6609 22 7 5.6258 -1.9614 -2.4989 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8409 29 1 3.9785 2.1765 0.0890 30 1 3.9671 0.9225 -3.3260 31 1 2.6326 1.6787 -2.4229 32 1 4.2761 2.3534 -2.3134 33 1 5.6034 -0.3429 -0.2825 34 1 6.0004 1.1250 -1.2076 35 1 6.5272 0.8128 -3.8299 36 1 6.1992 -1.6552 -6.3862 37 1 7.3179 -0.3345 -5.9706 38 1 8.9332 -1.9865 -5.0701 39 1 7.8144 -3.3070 -5.4856 40 1 11.0717 -4.4727 -6.7465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594650403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:46 Heat of formation + Delta-G solvation = 29.377886 kcal Electronic energy + Delta-G solvation = -20002.912175 eV Core-core repulsion = 16854.349256 eV Total energy + Delta-G solvation = -3148.562919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.12348 -39.35630 -37.81727 -36.61453 -34.76262 -32.85378 -31.74060 -30.41590 -28.46662 -27.32501 -27.15692 -25.35588 -24.17977 -22.69182 -22.06287 -21.21132 -18.87952 -17.61845 -17.58585 -17.43063 -17.02416 -16.48386 -16.32473 -15.98746 -15.70219 -15.45104 -15.15006 -14.87532 -14.32781 -13.92390 -13.66172 -13.36864 -13.11251 -12.92938 -12.75713 -12.69105 -12.54541 -12.40370 -12.35678 -12.21682 -11.93364 -11.74284 -11.57255 -11.45718 -10.83051 -10.61841 -10.48404 -10.12489 -9.12697 -8.26002 -6.40674 0.78710 1.41718 1.45705 1.53232 1.57329 1.65295 2.39887 2.98355 3.09124 3.13843 3.48207 3.82256 4.03894 4.09222 4.17102 4.26975 4.27797 4.41515 4.47076 4.51942 4.56473 4.56884 4.63493 4.64197 4.75999 4.77557 4.90380 4.97678 5.05377 5.13241 5.24876 5.31409 5.47615 5.61486 5.80703 6.05817 6.11687 6.17007 6.44797 6.75768 7.30566 7.67883 8.86496 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.047580 B = 0.002916 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.345307 B = 9599.798304 C = 9622.210858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.061 3.939 4 C 0.057 3.943 5 N -0.554 5.554 6 C 0.025 3.975 7 C 0.152 3.848 8 C -0.028 4.028 9 C -0.039 4.039 10 N -0.280 5.280 11 C 0.126 3.874 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.081 0.919 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.975 3.025 18 H -0.259 1.259 19 H -0.289 1.289 20 H -0.265 1.265 21 N -0.132 5.132 22 N -0.299 5.299 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.227 0.773 36 H 0.098 0.902 37 H 0.131 0.869 38 H -0.008 1.008 39 H -0.006 1.006 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.129 18.016 10.597 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.015 4.015 4 C -0.070 4.070 5 N -0.279 5.279 6 C -0.123 4.123 7 C 0.023 3.977 8 C -0.169 4.169 9 C -0.192 4.192 10 N -0.072 5.072 11 C 0.007 3.993 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.099 0.901 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.798 3.202 18 H -0.183 1.183 19 H -0.215 1.215 20 H -0.189 1.189 21 N -0.111 5.111 22 N -0.165 5.165 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.243 0.757 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.011 0.989 39 H 0.013 0.987 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.355 15.734 10.524 24.374 hybrid contribution 1.021 1.227 -0.751 1.764 sum -14.334 16.960 9.773 24.262 Atomic orbital electron populations 1.22830 0.80481 1.03065 1.00528 1.88005 1.20477 1.28899 1.95445 1.22740 0.93211 0.84572 1.01005 1.22212 0.94069 0.99119 0.91631 1.61703 1.16929 1.45164 1.04110 1.22423 1.01774 0.94886 0.93235 1.20217 0.88364 0.96358 0.92780 1.22267 1.05227 0.91269 0.98137 1.24067 1.07150 0.95714 0.92274 1.47881 1.38877 1.05316 1.15161 1.22482 0.97339 1.04365 0.75156 1.19137 0.91591 0.93632 0.97060 1.21434 1.15564 1.25751 0.95449 0.90052 1.26073 0.97067 0.94617 1.02149 1.70139 1.24417 1.27090 1.35709 0.85350 0.77744 0.78552 0.78504 1.18344 1.21488 1.18937 1.78345 1.16949 1.14785 1.01015 1.74985 1.17593 1.13696 1.10177 0.92756 0.93810 0.89903 0.90992 0.92736 0.90291 0.90533 0.93120 0.91088 0.93230 0.89687 0.90081 0.75666 0.88406 0.85057 0.98942 0.98748 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.34 10.65 -148.98 -1.59 -10.93 16 3 C 0.06 0.97 6.00 71.98 0.43 1.40 16 4 C 0.06 0.92 5.34 86.30 0.46 1.38 16 5 N -0.55 -12.32 4.70 -927.08 -4.36 -16.68 16 6 C 0.02 0.45 9.13 127.69 1.17 1.62 16 7 C 0.15 3.53 5.53 85.56 0.47 4.00 16 8 C -0.03 -0.90 5.97 41.60 0.25 -0.66 16 9 C -0.04 -1.16 10.52 83.49 0.88 -0.28 16 10 N -0.28 -10.74 3.44 -347.73 -1.20 -11.93 16 11 C 0.13 4.76 6.39 86.38 0.55 5.31 16 12 C 0.02 1.23 5.10 29.85 0.15 1.38 16 13 C -0.54 -28.96 9.11 25.60 0.23 -28.73 16 14 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 17 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 N -0.13 -6.03 12.91 37.02 0.48 -5.55 16 22 N -0.30 -12.71 12.41 -48.59 -0.60 -13.31 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.78 6.26 -2.38 -0.01 0.76 16 28 H 0.08 1.38 7.93 -2.39 -0.02 1.36 16 29 H 0.08 0.81 8.12 -2.38 -0.02 0.79 16 30 H 0.05 1.12 6.56 -2.39 -0.02 1.11 16 31 H 0.07 1.20 6.20 -2.39 -0.01 1.19 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 34 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 35 H 0.23 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.13 3.94 8.07 -2.38 -0.02 3.92 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H -0.01 -0.35 8.12 -2.38 -0.02 -0.37 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -75.85 336.24 2.36 -73.49 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.01 Total: 9.48 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 6.31 Total: -12.46 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.39 Total: -104.06 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.59 Total: -10.93 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.85 2.36 -73.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594650403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.871 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds