Wall clock time and date at job start Mon Mar 30 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47184 * 240.00101 * 3 2 1 5 5 H 1.48499 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47537 * 119.99983 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.52997 * 109.47555 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47273 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46992 * 179.97438 * 19 18 17 21 21 C 1.53774 * 113.61605 * 274.13939 * 20 19 18 22 22 C 1.53959 * 87.01999 * 220.04797 * 21 20 19 23 23 C 1.53776 * 113.61207 * 176.52837 * 20 19 18 24 24 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 26 26 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 27 27 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 28 28 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 29 29 H 1.00907 * 110.99710 * 296.04721 * 13 11 10 30 30 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 31 31 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 32 32 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 33 33 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 34 34 H 1.08998 * 109.47382 * 300.00439 * 18 17 16 35 35 H 1.09005 * 109.46800 * 60.00640 * 18 17 16 36 36 H 1.08992 * 109.47143 * 300.00104 * 19 18 17 37 37 H 1.08997 * 109.46799 * 60.00311 * 19 18 17 38 38 H 1.09002 * 112.85003 * 45.33621 * 20 19 18 39 39 H 1.09002 * 113.61635 * 334.56658 * 21 20 19 40 40 H 1.09000 * 113.61863 * 105.47061 * 21 20 19 41 41 H 1.09001 * 113.53640 * 270.81154 * 22 21 20 42 42 H 1.09000 * 113.73667 * 139.94450 * 22 21 20 43 43 H 1.08998 * 113.61637 * 254.52856 * 23 20 19 44 44 H 1.09004 * 113.61844 * 25.35805 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 6 4.3315 -7.7202 2.9136 19 6 5.3253 -8.8768 3.0384 20 6 5.7428 -9.0346 4.5019 21 6 6.9158 -8.1275 4.9092 22 6 7.4515 -9.3206 5.7216 23 6 6.6795 -10.2287 4.7499 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.0232 -4.4008 -1.3300 30 1 1.3476 -5.1034 -2.0499 31 1 2.6973 -5.9560 2.1190 32 1 3.4456 -8.4832 1.1045 33 1 4.7943 -7.3517 0.8418 34 1 4.8002 -6.7990 3.2595 35 1 3.4515 -7.9307 3.5214 36 1 4.8562 -9.7978 2.6927 37 1 6.2053 -8.6668 2.4306 38 1 4.8985 -8.9919 5.1900 39 1 7.5580 -7.8434 4.0755 40 1 6.6180 -7.2781 5.5239 41 1 7.0750 -9.3551 6.7440 42 1 8.5334 -9.4398 5.6646 43 1 6.1912 -11.0732 5.2362 44 1 7.2560 -10.5211 3.8722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595256737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:56 Heat of formation + Delta-G solvation = -56.797733 kcal Electronic energy + Delta-G solvation = -19912.571197 eV Core-core repulsion = 16863.811767 eV Total energy + Delta-G solvation = -3048.759431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64302 -39.19469 -35.91312 -35.18227 -32.85498 -32.60322 -29.87619 -28.11785 -26.22721 -25.89351 -24.14300 -22.85476 -21.55129 -20.65542 -19.67858 -19.63934 -17.25474 -16.26902 -16.10700 -15.97830 -15.57200 -14.95496 -14.60330 -14.46743 -14.31544 -13.91170 -13.32037 -13.17414 -12.92345 -12.75744 -12.74869 -12.26726 -12.11324 -11.82657 -11.61636 -11.55533 -11.09054 -11.03465 -10.90524 -10.84754 -10.70708 -10.44667 -10.35511 -9.97924 -9.88058 -9.28367 -9.18805 -8.92395 -8.43749 -8.16302 -6.08442 -4.11625 2.98862 3.28375 3.32430 3.33274 3.35954 4.25506 4.33167 4.38323 4.39399 4.54062 4.78255 4.83728 5.03957 5.12758 5.21728 5.27705 5.30740 5.37128 5.43515 5.45795 5.50043 5.55264 5.59408 5.61054 5.67856 5.77206 5.78868 5.91755 6.01907 6.07043 6.21900 6.30071 6.52952 6.59187 6.88445 7.46075 7.52427 7.62307 7.75153 7.88600 7.93080 8.31394 8.52024 8.94168 9.53169 11.02448 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.003014 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.245210 B = 9286.874513 C =10449.558273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.541 6.541 16 N -0.736 5.736 17 C 0.120 3.880 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.139 4.139 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.354 0.646 30 H 0.345 0.655 31 H 0.401 0.599 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.370 -17.691 10.295 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.417 6.417 16 N -0.389 5.389 17 C -0.004 4.004 18 C -0.168 4.168 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.176 4.176 22 C -0.182 4.182 23 C -0.176 4.176 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.235 0.765 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.218 -18.749 9.840 23.511 hybrid contribution 0.731 2.204 0.253 2.336 sum 10.949 -16.545 10.094 22.260 Atomic orbital electron populations 1.69939 1.06020 1.26895 1.50370 1.25013 0.94875 0.99298 0.95129 0.86639 0.79591 0.83013 0.78664 1.20228 1.21212 1.20210 1.21148 0.92986 0.90925 1.51215 0.92779 1.19099 0.93725 0.91102 0.97353 1.22373 0.99855 0.93982 1.01458 1.21477 0.94702 0.92351 0.95565 0.88630 1.58746 1.18469 1.55847 1.03235 1.20896 0.81110 0.84406 0.82504 1.90628 1.60422 1.53450 1.37152 1.46014 1.46983 1.35704 1.10206 1.21292 0.92658 0.89956 0.96451 1.21788 0.99672 0.99709 0.95635 1.21482 0.98989 0.98170 0.95788 1.22555 0.96897 0.96647 0.96733 1.23022 0.97675 0.96863 1.00055 1.22845 0.99954 0.96984 0.98438 1.22947 0.98308 0.96780 0.99613 0.92818 0.96403 0.96330 0.92567 0.92715 0.83101 0.84160 0.76475 0.91855 0.91873 0.91095 0.91298 0.91566 0.91555 0.89265 0.90062 0.91532 0.90373 0.91644 0.91692 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 10 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 11 C 0.07 1.29 3.21 -68.86 -0.22 1.07 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.83 -14.68 8.94 -5.65 -0.05 -14.73 16 14 C 0.52 8.91 7.08 -10.98 -0.08 8.83 16 15 O -0.54 -10.91 16.25 5.55 0.09 -10.82 16 16 N -0.74 -9.65 5.56 -60.29 -0.33 -9.99 16 17 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 18 C -0.13 -1.08 5.32 -26.73 -0.14 -1.22 16 19 C -0.11 -0.78 5.04 -26.73 -0.13 -0.92 16 20 C -0.11 -0.76 3.64 -89.81 -0.33 -1.08 16 21 C -0.14 -0.97 7.65 -25.83 -0.20 -1.16 16 22 C -0.14 -0.92 8.09 -25.82 -0.21 -1.13 16 23 C -0.14 -0.90 7.65 -25.92 -0.20 -1.09 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.35 6.22 7.55 -39.29 -0.30 5.93 16 30 H 0.35 6.19 8.58 -39.29 -0.34 5.85 16 31 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -31.26 357.71 -9.43 -40.69 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.04 Total: 9.49 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.20 Total: -10.97 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.35 Total: -50.08 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.26 -9.43 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595256737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.107 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds