Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47184 * 240.00101 * 3 2 1 5 5 H 1.48499 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47537 * 119.99983 * 3 2 1 7 7 C 1.37876 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46946 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47528 * 304.99959 * 11 10 9 13 13 N 1.46900 * 109.47571 * 65.00314 * 11 10 9 14 14 C 1.50702 * 109.47121 * 185.00076 * 11 10 9 15 15 O 1.21283 * 120.00262 * 260.00193 * 14 11 10 16 16 N 1.34777 * 119.99928 * 79.72099 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.52997 * 109.47555 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47273 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46992 * 179.97438 * 19 18 17 21 21 C 1.53774 * 113.61605 * 274.13939 * 20 19 18 22 22 C 1.53959 * 87.01999 * 220.04797 * 21 20 19 23 23 C 1.53776 * 113.61207 * 176.52837 * 20 19 18 24 24 H 0.97004 * 119.99765 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47266 * 59.99260 * 9 7 2 26 26 H 1.09002 * 109.47214 * 300.00021 * 9 7 2 27 27 H 1.08996 * 109.47173 * 60.00215 * 10 9 7 28 28 H 1.08998 * 109.47028 * 299.99800 * 10 9 7 29 29 H 1.00907 * 110.99710 * 296.04721 * 13 11 10 30 30 H 1.00898 * 110.99811 * 59.99595 * 13 11 10 31 31 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 32 32 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 33 33 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 34 34 H 1.08998 * 109.47382 * 300.00439 * 18 17 16 35 35 H 1.09005 * 109.46800 * 60.00640 * 18 17 16 36 36 H 1.08992 * 109.47143 * 300.00104 * 19 18 17 37 37 H 1.08997 * 109.46799 * 60.00311 * 19 18 17 38 38 H 1.09002 * 112.85003 * 45.33621 * 20 19 18 39 39 H 1.09002 * 113.61635 * 334.56658 * 21 20 19 40 40 H 1.09000 * 113.61863 * 105.47061 * 21 20 19 41 41 H 1.09001 * 113.53640 * 270.81154 * 22 21 20 42 42 H 1.09000 * 113.73667 * 139.94450 * 22 21 20 43 43 H 1.08998 * 113.61637 * 254.52856 * 23 20 19 44 44 H 1.09004 * 113.61844 * 25.35805 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 1 0.7883 -5.0068 0.8432 13 7 0.7280 -5.1189 -1.2537 14 6 2.4548 -6.1298 0.1250 15 8 2.7863 -6.7536 -0.8608 16 7 2.9624 -6.4549 1.3305 17 6 3.9145 -7.5619 1.4501 18 6 4.3315 -7.7202 2.9136 19 6 5.3253 -8.8768 3.0384 20 6 5.7428 -9.0346 4.5019 21 6 6.9158 -8.1275 4.9092 22 6 7.4515 -9.3206 5.7216 23 6 6.6795 -10.2287 4.7499 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.0232 -4.4008 -1.3300 30 1 1.3476 -5.1034 -2.0499 31 1 2.6973 -5.9560 2.1190 32 1 3.4456 -8.4832 1.1045 33 1 4.7943 -7.3517 0.8418 34 1 4.8002 -6.7990 3.2595 35 1 3.4515 -7.9307 3.5214 36 1 4.8562 -9.7978 2.6927 37 1 6.2053 -8.6668 2.4306 38 1 4.8985 -8.9919 5.1900 39 1 7.5580 -7.8434 4.0755 40 1 6.6180 -7.2781 5.5239 41 1 7.0750 -9.3551 6.7440 42 1 8.5334 -9.4398 5.6646 43 1 6.1912 -11.0732 5.2362 44 1 7.2560 -10.5211 3.8722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595256737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = -77.186033 kcal Electronic energy + Delta-G solvation = -19913.455300 eV Core-core repulsion = 16863.811767 eV Total energy + Delta-G solvation = -3049.643534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91966 -39.80066 -37.25031 -36.48386 -34.83473 -33.51445 -31.68422 -29.15125 -27.67994 -26.44311 -25.64421 -23.86438 -22.36736 -22.25539 -20.96535 -20.20531 -18.84882 -18.06069 -17.22624 -16.80080 -16.52531 -16.30794 -15.96753 -15.67553 -15.52527 -15.21395 -14.68009 -14.54930 -14.07924 -13.85970 -13.59112 -13.44062 -13.27231 -12.99531 -12.91386 -12.68075 -12.54830 -12.44785 -12.17152 -11.80578 -11.72345 -11.69228 -11.36995 -11.31825 -11.01816 -10.92691 -10.66788 -10.55614 -10.08979 -9.64248 -8.21354 -6.31851 1.40016 1.41618 1.49600 1.62205 2.17379 2.40222 3.12201 3.67762 3.75590 3.78638 3.79562 3.85884 4.01756 4.11922 4.14551 4.16417 4.25793 4.39666 4.65271 4.66681 4.74151 4.78499 4.83285 4.86869 4.92426 4.96027 5.04916 5.08874 5.11576 5.13425 5.27976 5.36277 5.46218 5.47098 5.51804 5.65786 5.69610 5.80689 6.07530 6.21334 6.47546 6.55759 6.83513 7.25002 7.37218 8.89237 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.003014 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.245210 B = 9286.874513 C =10449.558273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.576 6.576 16 N -0.720 5.720 17 C 0.119 3.881 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.108 4.108 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.352 0.648 30 H 0.343 0.657 31 H 0.414 0.586 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.337 -17.895 11.501 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.362 5.362 14 C 0.310 3.690 15 O -0.455 6.455 16 N -0.372 5.372 17 C -0.004 4.004 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.127 4.127 21 C -0.180 4.180 22 C -0.182 4.182 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.250 0.750 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.200 -18.963 11.090 24.658 hybrid contribution 0.426 2.233 -0.104 2.276 sum 11.626 -16.730 10.986 23.146 Atomic orbital electron populations 1.70055 1.07498 1.27845 1.51265 1.25872 0.95742 1.02995 0.94734 0.85592 0.78373 0.78598 0.79042 1.19686 1.20820 1.19130 1.21598 0.93358 0.92478 1.50986 0.92703 1.18967 0.94037 0.91984 0.95744 1.22124 0.98772 0.93709 1.01386 1.21426 0.94806 0.91338 0.95942 0.87190 1.58765 1.18419 1.55630 1.03401 1.20754 0.80973 0.84099 0.83138 1.90616 1.61636 1.54682 1.38536 1.45940 1.46148 1.35702 1.09454 1.21421 0.91648 0.88874 0.98446 1.21716 1.00296 1.00259 0.93388 1.21455 0.98615 0.97820 0.96248 1.22546 0.97013 0.96867 0.96251 1.23044 0.97802 0.97056 1.00098 1.22862 1.00145 0.96564 0.98612 1.22955 0.98202 0.96804 0.99690 0.92711 0.97991 0.97869 0.91473 0.93849 0.83256 0.84383 0.74988 0.92334 0.92865 0.90797 0.90230 0.91374 0.91834 0.88910 0.90385 0.91648 0.89915 0.91435 0.91245 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 2 C 0.01 0.28 5.46 84.65 0.46 0.75 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.55 -29.99 9.11 25.60 0.23 -29.76 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.46 4.74 29.84 0.14 1.60 16 10 C -0.12 -4.69 4.78 30.59 0.15 -4.54 16 11 C 0.08 2.71 3.21 44.17 0.14 2.85 16 12 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 13 N -0.83 -29.20 8.94 -171.79 -1.54 -30.73 16 14 C 0.52 17.28 7.08 87.66 0.62 17.90 16 15 O -0.58 -22.97 16.25 -3.04 -0.05 -23.02 16 16 N -0.72 -17.70 5.56 -463.06 -2.57 -20.28 16 17 C 0.12 2.54 5.67 86.38 0.49 3.03 16 18 C -0.12 -1.72 5.32 30.59 0.16 -1.56 16 19 C -0.10 -1.35 5.04 30.60 0.15 -1.20 16 20 C -0.11 -1.30 3.64 -10.27 -0.04 -1.33 16 21 C -0.14 -1.78 7.65 31.18 0.24 -1.54 16 22 C -0.14 -1.62 8.09 31.18 0.25 -1.37 16 23 C -0.14 -1.57 7.65 31.12 0.24 -1.33 16 24 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.00 0.09 6.87 -2.39 -0.02 0.08 16 26 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.35 12.48 7.55 -89.69 -0.68 11.80 16 30 H 0.34 12.35 8.58 -89.70 -0.77 11.58 16 31 H 0.41 8.15 8.47 -92.71 -0.79 7.36 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.02 7.92 -2.39 -0.02 1.00 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.91 8.10 -2.38 -0.02 0.89 16 Total: -1.00 -65.68 357.71 0.15 -65.53 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -1.25 Total: 33.77 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 3.24 Total: -16.50 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.82 Total: -105.09 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.68 0.15 -65.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595256737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.653 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds