Wall clock time and date at job start Mon Mar 30 2020 01:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47170 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47479 * 179.97438 * 19 18 17 21 21 C 1.53777 * 113.61847 * 274.13620 * 20 19 18 22 22 C 1.53954 * 87.02204 * 220.04525 * 21 20 19 23 23 C 1.53779 * 113.61938 * 176.52376 * 20 19 18 24 24 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 30 30 H 1.00908 * 110.99704 * 63.95534 * 13 11 10 31 31 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 32 32 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 33 33 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 34 34 H 1.09006 * 109.46893 * 299.99771 * 18 17 16 35 35 H 1.08995 * 109.47255 * 59.99639 * 18 17 16 36 36 H 1.09005 * 109.47123 * 299.99683 * 19 18 17 37 37 H 1.08995 * 109.47559 * 59.99985 * 19 18 17 38 38 H 1.09004 * 112.84759 * 45.33140 * 20 19 18 39 39 H 1.09000 * 113.61172 * 334.56385 * 21 20 19 40 40 H 1.09004 * 113.61630 * 105.46300 * 21 20 19 41 41 H 1.09000 * 113.53393 * 270.80944 * 22 21 20 42 42 H 1.08995 * 113.74417 * 139.94223 * 22 21 20 43 43 H 1.08993 * 113.61979 * 254.53281 * 23 20 19 44 44 H 1.09004 * 113.61209 * 25.35097 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5073 -6.4647 2.9212 19 6 7.0183 -7.9011 3.0482 20 6 6.9510 -8.3388 4.5127 21 6 8.1905 -7.9421 5.3319 22 6 8.0858 -9.3213 6.0081 23 6 7.3648 -9.8027 4.7380 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1497 0.8925 29 1 5.7193 -2.5811 -2.0477 30 1 5.7729 -1.0824 -1.3287 31 1 5.7864 -4.1716 2.1231 32 1 5.9551 -6.6876 0.8512 33 1 7.6072 -6.0778 1.1094 34 1 7.1274 -5.8039 3.5271 35 1 5.4753 -6.4137 3.2681 36 1 6.3986 -8.5622 2.4423 37 1 8.0504 -7.9517 2.7015 38 1 6.0082 -8.0731 4.9910 39 1 9.0906 -7.8184 4.7297 40 1 8.0163 -7.1075 6.0110 41 1 7.4540 -9.3237 6.8963 42 1 9.0492 -9.8037 6.1727 43 1 6.5250 -10.4680 4.9382 44 1 8.0375 -10.1890 3.9722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595256738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:58 Heat of formation + Delta-G solvation = -52.934843 kcal Electronic energy + Delta-G solvation = -19935.996306 eV Core-core repulsion = 16887.404383 eV Total energy + Delta-G solvation = -3048.591923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.71224 -39.22684 -36.01899 -35.28418 -32.82105 -32.64364 -30.31472 -28.22041 -26.49391 -25.92983 -24.13312 -22.79217 -21.57815 -20.50200 -19.75126 -19.69514 -17.36640 -16.64200 -16.25148 -15.99425 -15.60861 -14.97232 -14.69944 -14.41140 -14.26114 -14.04245 -13.48192 -13.15968 -13.01322 -12.78033 -12.70067 -12.66562 -12.29428 -11.92282 -11.75389 -11.58002 -11.33554 -11.07164 -10.98297 -10.86545 -10.47421 -10.39563 -10.30880 -10.10869 -9.87097 -9.38348 -9.31794 -8.97963 -8.62476 -8.30884 -6.12061 -4.11608 2.91097 3.24851 3.25918 3.33068 3.34410 4.23807 4.31259 4.36515 4.37326 4.52189 4.75103 4.81580 4.97367 5.06971 5.08223 5.20941 5.28204 5.34656 5.40981 5.43013 5.47135 5.50390 5.52526 5.57567 5.61925 5.65270 5.75143 5.88930 5.99619 6.04940 6.14276 6.20296 6.33563 6.52763 6.66121 7.08835 7.21968 7.34479 7.65621 7.67460 7.78813 8.43514 8.45412 8.91965 9.49183 11.01165 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.002886 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.932128 B = 9698.519912 C =10305.717755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.071 3.929 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.539 6.539 16 N -0.735 5.735 17 C 0.120 3.880 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.139 4.139 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.348 0.652 30 H 0.350 0.650 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.041 -14.998 10.529 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.044 4.044 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.414 6.414 16 N -0.388 5.388 17 C -0.004 4.004 18 C -0.168 4.168 19 C -0.144 4.144 20 C -0.129 4.129 21 C -0.176 4.176 22 C -0.182 4.182 23 C -0.177 4.177 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.898 -15.481 10.079 25.036 hybrid contribution -0.946 1.279 0.226 1.607 sum 15.951 -14.202 10.305 23.714 Atomic orbital electron populations 1.69912 1.06339 1.27011 1.50690 1.25051 0.94768 0.99248 0.94430 0.86761 0.80307 0.83510 0.78584 1.20217 1.21335 1.18961 1.21070 0.89244 0.94528 1.51313 0.91080 1.19575 0.97539 0.91396 0.96301 1.22196 0.91294 1.01062 1.02344 1.21513 0.95638 0.91781 0.95467 0.88589 1.58737 1.66732 1.07386 1.03424 1.20784 0.76779 0.88720 0.82592 1.90638 1.47386 1.66232 1.37190 1.46004 1.67372 1.15377 1.10077 1.21304 0.99700 0.82836 0.96522 1.21788 1.02297 0.97161 0.95568 1.21480 1.01601 0.95485 0.95864 1.22560 0.98636 0.96123 0.95539 1.23018 0.98314 0.97136 0.99118 1.22842 1.00732 0.97240 0.97401 1.22946 1.00354 0.96389 0.97977 0.92630 0.96354 0.97034 0.92080 0.91903 0.83849 0.83551 0.76464 0.91764 0.91837 0.91245 0.91113 0.91484 0.91607 0.89187 0.90129 0.91591 0.90345 0.91659 0.91627 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.24 3.81 -27.89 -0.11 -0.35 16 10 C -0.13 -2.44 4.78 -26.73 -0.13 -2.57 16 11 C 0.07 1.15 3.21 -68.86 -0.22 0.93 16 12 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 13 N -0.83 -13.62 8.94 -5.66 -0.05 -13.67 16 14 C 0.52 8.54 7.08 -10.99 -0.08 8.46 16 15 O -0.54 -10.52 16.25 5.55 0.09 -10.43 16 16 N -0.74 -9.23 5.56 -60.30 -0.33 -9.57 16 17 C 0.12 1.32 5.67 -4.04 -0.02 1.29 16 18 C -0.13 -1.04 5.32 -26.73 -0.14 -1.18 16 19 C -0.11 -0.77 5.04 -26.73 -0.13 -0.90 16 20 C -0.11 -0.74 3.64 -89.81 -0.33 -1.07 16 21 C -0.14 -0.90 7.65 -25.83 -0.20 -1.10 16 22 C -0.14 -0.89 8.09 -25.83 -0.21 -1.10 16 23 C -0.14 -0.89 7.65 -25.92 -0.20 -1.09 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 26 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 30 H 0.35 5.50 7.55 -39.29 -0.30 5.21 16 31 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.14 354.11 -9.05 -41.19 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.00 Total: 9.07 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.19 Total: -11.72 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.39 Total: -49.87 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -9.05 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595256738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.741 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds