Wall clock time and date at job start Mon Mar 30 2020 01:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47170 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47479 * 179.97438 * 19 18 17 21 21 C 1.53777 * 113.61847 * 274.13620 * 20 19 18 22 22 C 1.53954 * 87.02204 * 220.04525 * 21 20 19 23 23 C 1.53779 * 113.61938 * 176.52376 * 20 19 18 24 24 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 30 30 H 1.00908 * 110.99704 * 63.95534 * 13 11 10 31 31 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 32 32 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 33 33 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 34 34 H 1.09006 * 109.46893 * 299.99771 * 18 17 16 35 35 H 1.08995 * 109.47255 * 59.99639 * 18 17 16 36 36 H 1.09005 * 109.47123 * 299.99683 * 19 18 17 37 37 H 1.08995 * 109.47559 * 59.99985 * 19 18 17 38 38 H 1.09004 * 112.84759 * 45.33140 * 20 19 18 39 39 H 1.09000 * 113.61172 * 334.56385 * 21 20 19 40 40 H 1.09004 * 113.61630 * 105.46300 * 21 20 19 41 41 H 1.09000 * 113.53393 * 270.80944 * 22 21 20 42 42 H 1.08995 * 113.74417 * 139.94223 * 22 21 20 43 43 H 1.08993 * 113.61979 * 254.53281 * 23 20 19 44 44 H 1.09004 * 113.61209 * 25.35097 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5073 -6.4647 2.9212 19 6 7.0183 -7.9011 3.0482 20 6 6.9510 -8.3388 4.5127 21 6 8.1905 -7.9421 5.3319 22 6 8.0858 -9.3213 6.0081 23 6 7.3648 -9.8027 4.7380 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1497 0.8925 29 1 5.7193 -2.5811 -2.0477 30 1 5.7729 -1.0824 -1.3287 31 1 5.7864 -4.1716 2.1231 32 1 5.9551 -6.6876 0.8512 33 1 7.6072 -6.0778 1.1094 34 1 7.1274 -5.8039 3.5271 35 1 5.4753 -6.4137 3.2681 36 1 6.3986 -8.5622 2.4423 37 1 8.0504 -7.9517 2.7015 38 1 6.0082 -8.0731 4.9910 39 1 9.0906 -7.8184 4.7297 40 1 8.0163 -7.1075 6.0110 41 1 7.4540 -9.3237 6.8963 42 1 9.0492 -9.8037 6.1727 43 1 6.5250 -10.4680 4.9382 44 1 8.0375 -10.1890 3.9722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595256738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:58 Heat of formation + Delta-G solvation = -75.173361 kcal Electronic energy + Delta-G solvation = -19936.960641 eV Core-core repulsion = 16887.404383 eV Total energy + Delta-G solvation = -3049.556258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92718 -39.80384 -37.30342 -36.49441 -34.80834 -33.52272 -32.07788 -29.24533 -27.84416 -26.44382 -25.50166 -23.78570 -22.33208 -22.13534 -20.99818 -20.20703 -19.10188 -18.27680 -17.24921 -16.77852 -16.34524 -16.29473 -16.01190 -15.70367 -15.54180 -15.27474 -14.79846 -14.55649 -14.36166 -13.87898 -13.66974 -13.52356 -13.26908 -13.06128 -12.97743 -12.66274 -12.47139 -12.18822 -12.06322 -11.91218 -11.70554 -11.66346 -11.40744 -11.37227 -11.03638 -10.93347 -10.77620 -10.68949 -10.09216 -9.65521 -8.29860 -6.35483 1.38983 1.40212 1.51800 1.62018 2.17537 2.36445 3.05737 3.67552 3.73321 3.77706 3.78733 3.84979 4.01604 4.09497 4.13825 4.15166 4.19946 4.39681 4.57872 4.64569 4.70912 4.76698 4.78782 4.85126 4.92371 4.94972 4.96118 5.04717 5.11571 5.13108 5.27260 5.35305 5.36445 5.45736 5.48070 5.51934 5.62749 5.69250 6.06622 6.25178 6.48979 6.56126 6.73147 7.25271 7.29362 8.86940 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.002886 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.932128 B = 9698.519912 C =10305.717755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.118 4.118 11 C 0.080 3.920 12 H 0.121 0.879 13 N -0.831 5.831 14 C 0.521 3.479 15 O -0.576 6.576 16 N -0.720 5.720 17 C 0.119 3.881 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.266 0.734 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.344 0.656 30 H 0.355 0.645 31 H 0.414 0.586 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.198 -14.193 11.739 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.158 4.158 11 C -0.035 4.035 12 H 0.139 0.861 13 N -0.363 5.363 14 C 0.308 3.692 15 O -0.455 6.455 16 N -0.373 5.373 17 C -0.004 4.004 18 C -0.157 4.157 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.176 4.176 22 C -0.182 4.182 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.170 0.830 31 H 0.251 0.749 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.072 -14.694 11.331 26.610 hybrid contribution -1.683 0.914 -0.140 1.921 sum 17.389 -13.780 11.191 24.850 Atomic orbital electron populations 1.70083 1.08553 1.28243 1.52501 1.26101 0.95643 1.03839 0.93984 0.85592 0.79774 0.77664 0.79199 1.19366 1.21406 1.15873 1.21444 0.92234 0.92893 1.50700 0.95586 1.19505 0.93774 0.93824 0.97261 1.22019 0.93510 0.98728 1.01564 1.21453 0.93272 0.92429 0.96334 0.86149 1.58758 1.66506 1.07655 1.03366 1.20811 0.76645 0.88671 0.83086 1.90626 1.49357 1.66927 1.38609 1.45945 1.65946 1.15910 1.09488 1.21407 0.98992 0.81632 0.98372 1.21712 1.02784 0.97748 0.93408 1.21454 1.01582 0.94845 0.96271 1.22549 0.98800 0.96451 0.95072 1.23028 0.98120 0.97361 0.99104 1.22857 1.00965 0.97018 0.97352 1.22967 1.00472 0.96182 0.98218 0.92523 0.94872 0.95858 0.94124 0.91647 0.84242 0.83016 0.74920 0.93041 0.92259 0.90180 0.90829 0.91849 0.91425 0.89251 0.90044 0.91466 0.90065 0.91277 0.91572 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 2 C 0.00 0.05 5.47 84.65 0.46 0.52 16 3 Si 0.95 42.42 27.47 68.60 1.88 44.31 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 7 C -0.53 -29.97 9.66 25.60 0.25 -29.72 16 8 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 9 C -0.01 -0.27 3.81 29.85 0.11 -0.15 16 10 C -0.12 -4.33 4.78 30.59 0.15 -4.19 16 11 C 0.08 2.43 3.21 44.17 0.14 2.57 16 12 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 13 N -0.83 -25.58 8.94 -171.81 -1.54 -27.11 16 14 C 0.52 16.22 7.08 87.66 0.62 16.84 16 15 O -0.58 -22.17 16.25 -3.04 -0.05 -22.22 16 16 N -0.72 -16.78 5.56 -463.08 -2.57 -19.35 16 17 C 0.12 2.46 5.67 86.38 0.49 2.95 16 18 C -0.12 -1.68 5.32 30.59 0.16 -1.51 16 19 C -0.10 -1.34 5.04 30.59 0.15 -1.19 16 20 C -0.11 -1.32 3.64 -10.27 -0.04 -1.36 16 21 C -0.14 -1.56 7.65 31.18 0.24 -1.33 16 22 C -0.14 -1.55 8.09 31.18 0.25 -1.30 16 23 C -0.14 -1.61 7.65 31.12 0.24 -1.37 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 26 H 0.02 0.95 6.30 -2.39 -0.02 0.94 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.34 11.19 8.58 -89.69 -0.77 10.42 16 30 H 0.35 10.19 7.55 -89.69 -0.68 9.51 16 31 H 0.41 7.50 8.47 -92.70 -0.79 6.71 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.91 7.92 -2.39 -0.02 0.89 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.91 8.10 -2.38 -0.02 0.89 16 Total: -1.00 -69.98 354.11 -0.05 -70.03 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -1.30 Total: 32.55 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 3.23 Total: -19.24 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.81 Total: -105.43 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.31 kcal Total: -69.98 -0.05 -70.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595256738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds