Wall clock time and date at job start Mon Mar 30 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.87150 * 2 1 4 4 C 1.54163 * 109.89911 * 238.85403 * 2 1 3 5 5 C 1.54810 * 104.15662 * 242.63692 * 4 2 1 6 6 H 1.09002 * 110.90603 * 262.62238 * 5 4 2 7 7 N 1.46905 * 110.91048 * 139.06145 * 5 4 2 8 8 C 1.46948 * 111.00033 * 69.27096 * 7 5 4 9 9 C 1.53054 * 109.36649 * 183.19298 * 8 7 5 10 10 N 1.46966 * 109.36227 * 301.60486 * 9 8 7 11 11 C 1.46901 * 110.99739 * 183.18658 * 10 9 8 12 12 C 1.50698 * 109.46850 * 170.00249 * 11 10 9 13 13 H 1.08005 * 120.00100 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00070 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99926 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00252 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47226 * 59.99795 * 16 14 12 18 18 H 1.48503 * 109.47180 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47211 * 299.99890 * 16 14 12 20 20 C 1.46958 * 110.88046 * 59.31830 * 10 9 8 21 21 C 1.46954 * 111.00229 * 193.08160 * 7 5 4 22 22 C 1.54992 * 102.12884 * 20.84084 * 5 4 2 23 23 O 1.43748 * 109.87842 * 121.00822 * 2 1 3 24 24 H 1.09005 * 109.46912 * 300.45009 * 1 2 3 25 25 H 1.08996 * 109.46616 * 60.44868 * 1 2 3 26 26 H 1.08997 * 109.47513 * 180.45350 * 1 2 3 27 27 H 1.09000 * 109.46869 * 179.55832 * 3 2 1 28 28 H 1.09004 * 109.46852 * 299.55067 * 3 2 1 29 29 H 1.08991 * 109.47199 * 59.55425 * 3 2 1 30 30 H 1.08997 * 110.51934 * 123.95913 * 4 2 1 31 31 H 1.08998 * 110.48189 * 1.29137 * 4 2 1 32 32 H 1.09007 * 109.48945 * 63.22941 * 8 7 5 33 33 H 1.08997 * 109.51353 * 303.17243 * 8 7 5 34 34 H 1.08997 * 109.49379 * 181.63432 * 9 8 7 35 35 H 1.09005 * 109.50622 * 61.57425 * 9 8 7 36 36 H 1.09002 * 109.47229 * 49.99480 * 11 10 9 37 37 H 1.09000 * 109.47002 * 289.99885 * 11 10 9 38 38 H 0.96996 * 119.99961 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.49017 * 60.64460 * 20 10 9 40 40 H 1.09002 * 109.48471 * 180.71436 * 20 10 9 41 41 H 1.09004 * 109.48771 * 296.77313 * 21 7 5 42 42 H 1.08997 * 109.49248 * 56.83608 * 21 7 5 43 43 H 1.09001 * 110.61916 * 81.49469 * 22 5 4 44 44 H 1.08995 * 110.62229 * 204.33632 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0547 -0.7498 -1.2406 5 6 2.8324 -1.9534 -0.6548 6 1 3.9004 -1.7406 -0.6075 7 7 2.5774 -3.1720 -1.4346 8 6 3.1906 -3.0826 -2.7670 9 6 2.8359 -4.3338 -3.5740 10 7 3.3102 -5.5262 -2.8579 11 6 3.0551 -6.7448 -3.6377 12 6 3.7655 -7.9091 -2.9968 13 1 4.3485 -7.7588 -2.1002 14 6 3.6720 -9.1661 -3.5557 15 7 2.9624 -9.3490 -4.6479 16 14 4.5531 -10.6092 -2.7618 17 1 4.0511 -10.7943 -1.3766 18 1 4.2951 -11.8411 -3.5501 19 1 6.0130 -10.3396 -2.7274 20 6 2.6968 -5.6156 -1.5254 21 6 3.0516 -4.3644 -0.7185 22 6 2.2280 -2.0704 0.7676 23 8 2.0188 -0.6964 1.1586 24 1 -0.3633 0.5208 0.8860 25 1 -0.3632 0.5068 -0.8940 26 1 -0.3634 -1.0276 0.0081 27 1 3.1400 1.4312 0.0079 28 1 1.6969 1.9528 -0.8940 29 1 1.6839 1.9576 0.8859 30 1 2.7210 -0.1105 -1.8199 31 1 1.2247 -1.0953 -1.8568 32 1 4.2735 -3.0108 -2.6648 33 1 2.8146 -2.1988 -3.2823 34 1 3.3136 -4.2831 -4.5524 35 1 1.7546 -4.3913 -3.6998 36 1 3.4236 -6.6092 -4.6545 37 1 1.9835 -6.9423 -3.6629 38 1 2.8970 -10.2331 -5.0413 39 1 1.6140 -5.6874 -1.6276 40 1 3.0733 -6.4994 -1.0103 41 1 4.1329 -4.3071 -0.5930 42 1 2.5738 -4.4151 0.2599 43 1 1.2813 -2.6098 0.7393 44 1 2.9283 -2.5618 1.4430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595391350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:19 Heat of formation + Delta-G solvation = -39.332277 kcal Electronic energy + Delta-G solvation = -21480.978948 eV Core-core repulsion = 18432.976876 eV Total energy + Delta-G solvation = -3048.002072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27086 -38.32383 -35.08169 -33.28034 -32.56911 -30.53898 -30.41602 -27.59703 -27.30026 -26.07434 -24.69372 -22.87237 -21.68431 -20.66835 -20.08724 -19.23290 -16.77270 -16.30982 -16.11855 -15.32905 -14.95956 -14.62228 -14.32184 -14.16404 -14.03419 -13.72188 -13.54791 -13.27688 -12.99183 -12.63107 -12.35949 -12.10410 -12.04860 -11.81265 -11.66339 -11.43144 -11.14725 -10.99246 -10.83912 -10.79622 -10.73434 -10.56881 -10.33625 -10.22978 -9.78178 -9.68988 -9.19550 -8.44198 -8.21108 -7.24044 -6.03045 -4.04705 3.33016 3.37118 3.39913 3.58693 4.06918 4.41223 4.41818 4.58776 4.70776 4.91299 4.94319 5.07237 5.14622 5.28662 5.32593 5.39897 5.47337 5.48632 5.52501 5.64401 5.65582 5.68336 5.71414 5.78859 5.84031 5.87475 5.91822 5.97891 6.03991 6.11034 6.18567 6.41523 6.57233 6.66931 6.81596 7.14370 7.22248 7.33594 7.36254 7.79053 8.08378 8.19971 8.54441 9.02516 9.59540 11.07813 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043452 B = 0.003671 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.233998 B = 7626.009477 C = 7912.847022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 C -0.143 4.143 4 C -0.137 4.137 5 C 0.051 3.949 6 H 0.055 0.945 7 N -0.528 5.528 8 C 0.062 3.938 9 C 0.057 3.943 10 N -0.539 5.539 11 C 0.194 3.806 12 C -0.508 4.508 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.068 3.932 21 C 0.055 3.945 22 C 0.055 3.945 23 O -0.370 6.370 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.029 0.971 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.029 0.971 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 18.756 7.888 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 C -0.200 4.200 4 C -0.175 4.175 5 C -0.059 4.059 6 H 0.073 0.927 7 N -0.254 5.254 8 C -0.066 4.066 9 C -0.072 4.072 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.547 4.547 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.061 4.061 21 C -0.073 4.073 22 C -0.022 4.022 23 O -0.289 6.289 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.002 18.706 7.960 20.550 hybrid contribution 0.409 -1.016 0.048 1.097 sum -2.594 17.690 8.007 19.590 Atomic orbital electron populations 1.22236 0.94793 1.02727 1.02134 1.22095 0.93763 0.92985 0.85302 1.21900 1.01644 0.94174 1.02263 1.23063 1.00940 0.95940 0.97599 1.23148 0.98091 0.90856 0.93756 0.92725 1.62269 1.58722 1.01315 1.03073 1.22161 0.97060 0.98278 0.89124 1.22063 0.97944 0.90440 0.96786 1.62289 1.57469 1.03693 1.02941 1.19694 0.94960 0.85189 0.93259 1.21117 1.30360 0.91988 1.11236 0.91984 1.24991 0.95590 0.98934 0.95073 1.69951 1.40614 1.22987 1.20278 0.86560 0.80158 0.81469 0.79216 1.20257 1.21358 1.20187 1.21984 0.96764 0.96120 0.91201 1.22301 0.98242 0.89974 0.96803 1.23566 1.00538 0.83896 0.94218 1.88886 1.86069 1.20782 1.33185 0.92149 0.91680 0.91954 0.92008 0.91358 0.92023 0.90754 0.89293 0.94281 0.91186 0.91005 0.95140 0.95248 0.99061 0.92860 0.95292 0.89493 0.94205 0.91048 0.91106 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.61 37.16 0.32 -1.19 16 2 C 0.10 1.01 1.19 -90.01 -0.11 0.90 16 3 C -0.14 -1.21 8.68 37.16 0.32 -0.89 16 4 C -0.14 -1.45 5.05 -25.17 -0.13 -1.58 16 5 C 0.05 0.62 2.80 -65.70 -0.18 0.43 16 6 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 7 N -0.53 -7.60 4.55 -224.09 -1.02 -8.62 16 8 C 0.06 0.92 5.50 -3.77 -0.02 0.90 16 9 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 10 N -0.54 -11.66 4.70 -235.90 -1.11 -12.77 16 11 C 0.19 5.08 4.72 -4.98 -0.02 5.05 16 12 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 13 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 21 C 0.05 0.85 5.35 -3.77 -0.02 0.83 16 22 C 0.05 0.65 5.73 38.21 0.22 0.87 16 23 O -0.37 -4.61 10.86 -35.23 -0.38 -4.99 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 31 H 0.09 0.99 7.61 -51.93 -0.40 0.59 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.90 7.39 -51.93 -0.38 0.51 16 34 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 37 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.81 6.79 -51.93 -0.35 1.45 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.97 6.73 -51.93 -0.35 0.62 16 43 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 44 H 0.09 0.99 7.98 -51.93 -0.41 0.58 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -29.86 338.32 -9.88 -39.74 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -8.13 Total: -3.59 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.05 Total: -5.43 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -1.39 Total: -47.41 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.38 Total: -4.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.86 -9.88 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.409 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds