Wall clock time and date at job start Mon Mar 30 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.87150 * 2 1 4 4 C 1.54163 * 109.89911 * 238.85403 * 2 1 3 5 5 C 1.54810 * 104.15662 * 242.63692 * 4 2 1 6 6 H 1.09002 * 110.90603 * 262.62238 * 5 4 2 7 7 N 1.46905 * 110.91048 * 139.06145 * 5 4 2 8 8 C 1.46948 * 111.00033 * 69.27096 * 7 5 4 9 9 C 1.53054 * 109.36649 * 183.19298 * 8 7 5 10 10 N 1.46966 * 109.36227 * 301.60486 * 9 8 7 11 11 C 1.46901 * 110.99739 * 183.18658 * 10 9 8 12 12 C 1.50698 * 109.46850 * 170.00249 * 11 10 9 13 13 H 1.08005 * 120.00100 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00070 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99926 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00252 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47226 * 59.99795 * 16 14 12 18 18 H 1.48503 * 109.47180 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47211 * 299.99890 * 16 14 12 20 20 C 1.46958 * 110.88046 * 59.31830 * 10 9 8 21 21 C 1.46954 * 111.00229 * 193.08160 * 7 5 4 22 22 C 1.54992 * 102.12884 * 20.84084 * 5 4 2 23 23 O 1.43748 * 109.87842 * 121.00822 * 2 1 3 24 24 H 1.09005 * 109.46912 * 300.45009 * 1 2 3 25 25 H 1.08996 * 109.46616 * 60.44868 * 1 2 3 26 26 H 1.08997 * 109.47513 * 180.45350 * 1 2 3 27 27 H 1.09000 * 109.46869 * 179.55832 * 3 2 1 28 28 H 1.09004 * 109.46852 * 299.55067 * 3 2 1 29 29 H 1.08991 * 109.47199 * 59.55425 * 3 2 1 30 30 H 1.08997 * 110.51934 * 123.95913 * 4 2 1 31 31 H 1.08998 * 110.48189 * 1.29137 * 4 2 1 32 32 H 1.09007 * 109.48945 * 63.22941 * 8 7 5 33 33 H 1.08997 * 109.51353 * 303.17243 * 8 7 5 34 34 H 1.08997 * 109.49379 * 181.63432 * 9 8 7 35 35 H 1.09005 * 109.50622 * 61.57425 * 9 8 7 36 36 H 1.09002 * 109.47229 * 49.99480 * 11 10 9 37 37 H 1.09000 * 109.47002 * 289.99885 * 11 10 9 38 38 H 0.96996 * 119.99961 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.49017 * 60.64460 * 20 10 9 40 40 H 1.09002 * 109.48471 * 180.71436 * 20 10 9 41 41 H 1.09004 * 109.48771 * 296.77313 * 21 7 5 42 42 H 1.08997 * 109.49248 * 56.83608 * 21 7 5 43 43 H 1.09001 * 110.61916 * 81.49469 * 22 5 4 44 44 H 1.08995 * 110.62229 * 204.33632 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0547 -0.7498 -1.2406 5 6 2.8324 -1.9534 -0.6548 6 1 3.9004 -1.7406 -0.6075 7 7 2.5774 -3.1720 -1.4346 8 6 3.1906 -3.0826 -2.7670 9 6 2.8359 -4.3338 -3.5740 10 7 3.3102 -5.5262 -2.8579 11 6 3.0551 -6.7448 -3.6377 12 6 3.7655 -7.9091 -2.9968 13 1 4.3485 -7.7588 -2.1002 14 6 3.6720 -9.1661 -3.5557 15 7 2.9624 -9.3490 -4.6479 16 14 4.5531 -10.6092 -2.7618 17 1 4.0511 -10.7943 -1.3766 18 1 4.2951 -11.8411 -3.5501 19 1 6.0130 -10.3396 -2.7274 20 6 2.6968 -5.6156 -1.5254 21 6 3.0516 -4.3644 -0.7185 22 6 2.2280 -2.0704 0.7676 23 8 2.0188 -0.6964 1.1586 24 1 -0.3633 0.5208 0.8860 25 1 -0.3632 0.5068 -0.8940 26 1 -0.3634 -1.0276 0.0081 27 1 3.1400 1.4312 0.0079 28 1 1.6969 1.9528 -0.8940 29 1 1.6839 1.9576 0.8859 30 1 2.7210 -0.1105 -1.8199 31 1 1.2247 -1.0953 -1.8568 32 1 4.2735 -3.0108 -2.6648 33 1 2.8146 -2.1988 -3.2823 34 1 3.3136 -4.2831 -4.5524 35 1 1.7546 -4.3913 -3.6998 36 1 3.4236 -6.6092 -4.6545 37 1 1.9835 -6.9423 -3.6629 38 1 2.8970 -10.2331 -5.0413 39 1 1.6140 -5.6874 -1.6276 40 1 3.0733 -6.4994 -1.0103 41 1 4.1329 -4.3071 -0.5930 42 1 2.5738 -4.4151 0.2599 43 1 1.2813 -2.6098 0.7393 44 1 2.9283 -2.5618 1.4430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595391350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:19 Heat of formation + Delta-G solvation = -60.117405 kcal Electronic energy + Delta-G solvation = -21481.880258 eV Core-core repulsion = 18432.976876 eV Total energy + Delta-G solvation = -3048.903382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23761 -39.66719 -36.59444 -34.59847 -34.08308 -31.93752 -31.67513 -29.09008 -28.28328 -27.03435 -26.32117 -24.24559 -23.49135 -21.80533 -20.91484 -20.65693 -18.48277 -17.86650 -17.05648 -16.67183 -16.25338 -15.93583 -15.83183 -15.58897 -15.28108 -15.10998 -14.78428 -14.27106 -14.15304 -13.91609 -13.62011 -13.36876 -13.08032 -13.00653 -12.81454 -12.72025 -12.62322 -12.49758 -12.35357 -12.21990 -12.08795 -11.93836 -11.64416 -11.47683 -11.40506 -11.16013 -10.62987 -10.61545 -9.40043 -9.04386 -8.21361 -6.32023 1.40907 1.44165 1.52099 2.39727 2.61769 3.06035 3.10882 3.28748 3.51893 3.75350 3.92489 3.96408 4.14741 4.17382 4.19448 4.26069 4.35413 4.43003 4.46110 4.63272 4.69739 4.70787 4.76119 4.81575 4.83138 4.89707 4.96862 4.98106 4.98987 5.00594 5.07225 5.10746 5.21440 5.26867 5.28483 5.39959 5.62632 5.92007 5.95843 6.04671 6.13928 6.33331 6.61119 6.83664 7.37869 8.89752 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043452 B = 0.003671 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.233998 B = 7626.009477 C = 7912.847022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 C -0.140 4.140 4 C -0.133 4.133 5 C 0.052 3.948 6 H 0.056 0.944 7 N -0.532 5.532 8 C 0.073 3.927 9 C 0.055 3.945 10 N -0.545 5.545 11 C 0.209 3.791 12 C -0.525 4.525 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.070 3.930 21 C 0.067 3.933 22 C 0.056 3.944 23 O -0.385 6.385 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.004 0.996 37 H -0.040 1.040 38 H 0.265 0.735 39 H 0.016 0.984 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 20.117 9.018 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 C -0.197 4.197 4 C -0.170 4.170 5 C -0.056 4.056 6 H 0.074 0.926 7 N -0.258 5.258 8 C -0.055 4.055 9 C -0.074 4.074 10 N -0.270 5.270 11 C 0.083 3.917 12 C -0.563 4.563 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.059 4.059 21 C -0.061 4.061 22 C -0.021 4.021 23 O -0.305 6.305 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.022 0.978 37 H -0.023 1.023 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.430 20.102 9.104 22.201 hybrid contribution 0.179 -1.381 -0.325 1.430 sum -2.251 18.721 8.780 20.800 Atomic orbital electron populations 1.22227 0.94241 1.02199 1.03040 1.22294 0.94285 0.93707 0.84442 1.21909 1.01525 0.93052 1.03263 1.23060 1.00836 0.95358 0.97792 1.23171 0.98453 0.90177 0.93849 0.92617 1.62240 1.58631 1.01869 1.03064 1.22067 0.97080 0.97182 0.89215 1.22161 0.97328 0.90548 0.97363 1.62224 1.58131 1.03033 1.03618 1.19341 0.92538 0.87217 0.92613 1.21425 1.30534 0.92959 1.11406 0.91849 1.25936 0.96228 1.01990 0.95511 1.70085 1.41913 1.23843 1.21718 0.85420 0.79047 0.77538 0.78521 1.19108 1.20851 1.19295 1.21964 0.95675 0.97846 0.90390 1.22143 0.98326 0.88651 0.96996 1.23548 1.00437 0.83983 0.94113 1.88880 1.86289 1.20948 1.34348 0.91938 0.90137 0.93170 0.92175 0.89526 0.91932 0.89263 0.89638 0.94426 0.88347 0.91036 0.95988 0.97833 1.02269 0.92643 0.96567 0.91263 0.94373 0.88760 0.91616 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.61 71.98 0.62 -2.03 16 2 C 0.09 1.67 1.19 -10.40 -0.01 1.66 16 3 C -0.14 -2.00 8.68 71.98 0.62 -1.38 16 4 C -0.13 -2.44 5.05 31.61 0.16 -2.28 16 5 C 0.05 1.15 2.80 46.21 0.13 1.28 16 6 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 7 N -0.53 -14.41 4.55 -862.90 -3.93 -18.34 16 8 C 0.07 2.04 5.50 86.31 0.47 2.51 16 9 C 0.05 1.99 5.61 86.31 0.48 2.48 16 10 N -0.55 -24.09 4.70 -900.25 -4.23 -28.33 16 11 C 0.21 11.42 4.72 85.56 0.40 11.82 16 12 C -0.53 -30.08 8.47 25.60 0.22 -29.87 16 13 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16 16 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.07 2.75 5.43 86.31 0.47 3.22 16 21 C 0.07 2.00 5.35 86.31 0.46 2.46 16 22 C 0.06 1.22 5.73 72.66 0.42 1.63 16 23 O -0.39 -8.83 10.86 -148.98 -1.62 -10.45 16 24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.39 7.70 -2.39 -0.02 1.37 16 31 H 0.09 1.66 7.61 -2.39 -0.02 1.65 16 32 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.10 2.24 7.39 -2.39 -0.02 2.23 16 34 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 35 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.00 0.21 8.03 -2.39 -0.02 0.19 16 37 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 2.94 6.79 -2.39 -0.02 2.92 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 2.40 6.73 -2.39 -0.02 2.39 16 43 H 0.07 1.49 8.06 -2.39 -0.02 1.47 16 44 H 0.10 1.94 7.98 -2.39 -0.02 1.93 16 Total: -1.00 -64.97 338.32 -1.62 -66.59 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.93 Total: 8.64 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.91 Total: -7.95 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -7.87 Total: -103.26 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.62 Total: -10.45 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.97 -1.62 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.476 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds