Wall clock time and date at job start Mon Mar 30 2020 01:39:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.87150 * 2 1
4 4 C 1.54163 * 109.89911 * 238.85403 * 2 1 3
5 5 C 1.54810 * 104.15662 * 242.63692 * 4 2 1
6 6 H 1.09002 * 110.90603 * 262.62238 * 5 4 2
7 7 N 1.46905 * 110.91048 * 139.06145 * 5 4 2
8 8 C 1.46948 * 111.00033 * 69.27096 * 7 5 4
9 9 C 1.53054 * 109.36649 * 183.19298 * 8 7 5
10 10 N 1.46966 * 109.36227 * 301.60486 * 9 8 7
11 11 C 1.46901 * 110.99739 * 183.18658 * 10 9 8
12 12 C 1.50698 * 109.46850 * 170.00249 * 11 10 9
13 13 H 1.08005 * 120.00100 * 359.97438 * 12 11 10
14 14 C 1.37878 * 120.00070 * 180.02562 * 12 11 10
15 15 N 1.31522 * 119.99926 * 359.97438 * 14 12 11
16 16 Si 1.86796 * 120.00252 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.47226 * 59.99795 * 16 14 12
18 18 H 1.48503 * 109.47180 * 179.97438 * 16 14 12
19 19 H 1.48501 * 109.47211 * 299.99890 * 16 14 12
20 20 C 1.46958 * 110.88046 * 59.31830 * 10 9 8
21 21 C 1.46954 * 111.00229 * 193.08160 * 7 5 4
22 22 C 1.54992 * 102.12884 * 20.84084 * 5 4 2
23 23 O 1.43748 * 109.87842 * 121.00822 * 2 1 3
24 24 H 1.09005 * 109.46912 * 300.45009 * 1 2 3
25 25 H 1.08996 * 109.46616 * 60.44868 * 1 2 3
26 26 H 1.08997 * 109.47513 * 180.45350 * 1 2 3
27 27 H 1.09000 * 109.46869 * 179.55832 * 3 2 1
28 28 H 1.09004 * 109.46852 * 299.55067 * 3 2 1
29 29 H 1.08991 * 109.47199 * 59.55425 * 3 2 1
30 30 H 1.08997 * 110.51934 * 123.95913 * 4 2 1
31 31 H 1.08998 * 110.48189 * 1.29137 * 4 2 1
32 32 H 1.09007 * 109.48945 * 63.22941 * 8 7 5
33 33 H 1.08997 * 109.51353 * 303.17243 * 8 7 5
34 34 H 1.08997 * 109.49379 * 181.63432 * 9 8 7
35 35 H 1.09005 * 109.50622 * 61.57425 * 9 8 7
36 36 H 1.09002 * 109.47229 * 49.99480 * 11 10 9
37 37 H 1.09000 * 109.47002 * 289.99885 * 11 10 9
38 38 H 0.96996 * 119.99961 * 179.97438 * 15 14 12
39 39 H 1.08994 * 109.49017 * 60.64460 * 20 10 9
40 40 H 1.09002 * 109.48471 * 180.71436 * 20 10 9
41 41 H 1.09004 * 109.48771 * 296.77313 * 21 7 5
42 42 H 1.08997 * 109.49248 * 56.83608 * 21 7 5
43 43 H 1.09001 * 110.61916 * 81.49469 * 22 5 4
44 44 H 1.08995 * 110.62229 * 204.33632 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0501 1.4389 0.0000
4 6 2.0547 -0.7498 -1.2406
5 6 2.8324 -1.9534 -0.6548
6 1 3.9004 -1.7406 -0.6075
7 7 2.5774 -3.1720 -1.4346
8 6 3.1906 -3.0826 -2.7670
9 6 2.8359 -4.3338 -3.5740
10 7 3.3102 -5.5262 -2.8579
11 6 3.0551 -6.7448 -3.6377
12 6 3.7655 -7.9091 -2.9968
13 1 4.3485 -7.7588 -2.1002
14 6 3.6720 -9.1661 -3.5557
15 7 2.9624 -9.3490 -4.6479
16 14 4.5531 -10.6092 -2.7618
17 1 4.0511 -10.7943 -1.3766
18 1 4.2951 -11.8411 -3.5501
19 1 6.0130 -10.3396 -2.7274
20 6 2.6968 -5.6156 -1.5254
21 6 3.0516 -4.3644 -0.7185
22 6 2.2280 -2.0704 0.7676
23 8 2.0188 -0.6964 1.1586
24 1 -0.3633 0.5208 0.8860
25 1 -0.3632 0.5068 -0.8940
26 1 -0.3634 -1.0276 0.0081
27 1 3.1400 1.4312 0.0079
28 1 1.6969 1.9528 -0.8940
29 1 1.6839 1.9576 0.8859
30 1 2.7210 -0.1105 -1.8199
31 1 1.2247 -1.0953 -1.8568
32 1 4.2735 -3.0108 -2.6648
33 1 2.8146 -2.1988 -3.2823
34 1 3.3136 -4.2831 -4.5524
35 1 1.7546 -4.3913 -3.6998
36 1 3.4236 -6.6092 -4.6545
37 1 1.9835 -6.9423 -3.6629
38 1 2.8970 -10.2331 -5.0413
39 1 1.6140 -5.6874 -1.6276
40 1 3.0733 -6.4994 -1.0103
41 1 4.1329 -4.3071 -0.5930
42 1 2.5738 -4.4151 0.2599
43 1 1.2813 -2.6098 0.7393
44 1 2.9283 -2.5618 1.4430
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595391350.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:39:19
Heat of formation + Delta-G solvation = -60.117405 kcal
Electronic energy + Delta-G solvation = -21481.880258 eV
Core-core repulsion = 18432.976876 eV
Total energy + Delta-G solvation = -3048.903382 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.23761 -39.66719 -36.59444 -34.59847 -34.08308 -31.93752 -31.67513 -29.09008
-28.28328 -27.03435 -26.32117 -24.24559 -23.49135 -21.80533 -20.91484 -20.65693
-18.48277 -17.86650 -17.05648 -16.67183 -16.25338 -15.93583 -15.83183 -15.58897
-15.28108 -15.10998 -14.78428 -14.27106 -14.15304 -13.91609 -13.62011 -13.36876
-13.08032 -13.00653 -12.81454 -12.72025 -12.62322 -12.49758 -12.35357 -12.21990
-12.08795 -11.93836 -11.64416 -11.47683 -11.40506 -11.16013 -10.62987 -10.61545
-9.40043 -9.04386 -8.21361 -6.32023 1.40907 1.44165 1.52099 2.39727
2.61769 3.06035 3.10882 3.28748 3.51893 3.75350 3.92489 3.96408
4.14741 4.17382 4.19448 4.26069 4.35413 4.43003 4.46110 4.63272
4.69739 4.70787 4.76119 4.81575 4.83138 4.89707 4.96862 4.98106
4.98987 5.00594 5.07225 5.10746 5.21440 5.26867 5.28483 5.39959
5.62632 5.92007 5.95843 6.04671 6.13928 6.33331 6.61119 6.83664
7.37869 8.89752
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.043452 B = 0.003671 C = 0.003538
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 644.233998 B = 7626.009477 C = 7912.847022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.092 3.908
3 C -0.140 4.140
4 C -0.133 4.133
5 C 0.052 3.948
6 H 0.056 0.944
7 N -0.532 5.532
8 C 0.073 3.927
9 C 0.055 3.945
10 N -0.545 5.545
11 C 0.209 3.791
12 C -0.525 4.525
13 H 0.063 0.937
14 C 0.001 3.999
15 N -0.935 5.935
16 Si 0.970 3.030
17 H -0.266 1.266
18 H -0.283 1.283
19 H -0.268 1.268
20 C 0.070 3.930
21 C 0.067 3.933
22 C 0.056 3.944
23 O -0.385 6.385
24 H 0.062 0.938
25 H 0.080 0.920
26 H 0.049 0.951
27 H 0.059 0.941
28 H 0.086 0.914
29 H 0.062 0.938
30 H 0.089 0.911
31 H 0.085 0.915
32 H 0.037 0.963
33 H 0.098 0.902
34 H 0.071 0.929
35 H 0.022 0.978
36 H 0.004 0.996
37 H -0.040 1.040
38 H 0.265 0.735
39 H 0.016 0.984
40 H 0.069 0.931
41 H 0.038 0.962
42 H 0.094 0.906
43 H 0.066 0.934
44 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.406 20.117 9.018 22.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.053 3.947
3 C -0.197 4.197
4 C -0.170 4.170
5 C -0.056 4.056
6 H 0.074 0.926
7 N -0.258 5.258
8 C -0.055 4.055
9 C -0.074 4.074
10 N -0.270 5.270
11 C 0.083 3.917
12 C -0.563 4.563
13 H 0.082 0.918
14 C -0.197 4.197
15 N -0.576 5.576
16 Si 0.795 3.205
17 H -0.191 1.191
18 H -0.209 1.209
19 H -0.193 1.193
20 C -0.059 4.059
21 C -0.061 4.061
22 C -0.021 4.021
23 O -0.305 6.305
24 H 0.081 0.919
25 H 0.099 0.901
26 H 0.068 0.932
27 H 0.078 0.922
28 H 0.105 0.895
29 H 0.081 0.919
30 H 0.107 0.893
31 H 0.104 0.896
32 H 0.056 0.944
33 H 0.117 0.883
34 H 0.090 0.910
35 H 0.040 0.960
36 H 0.022 0.978
37 H -0.023 1.023
38 H 0.074 0.926
39 H 0.034 0.966
40 H 0.087 0.913
41 H 0.056 0.944
42 H 0.112 0.888
43 H 0.084 0.916
44 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -2.430 20.102 9.104 22.201
hybrid contribution 0.179 -1.381 -0.325 1.430
sum -2.251 18.721 8.780 20.800
Atomic orbital electron populations
1.22227 0.94241 1.02199 1.03040 1.22294 0.94285 0.93707 0.84442
1.21909 1.01525 0.93052 1.03263 1.23060 1.00836 0.95358 0.97792
1.23171 0.98453 0.90177 0.93849 0.92617 1.62240 1.58631 1.01869
1.03064 1.22067 0.97080 0.97182 0.89215 1.22161 0.97328 0.90548
0.97363 1.62224 1.58131 1.03033 1.03618 1.19341 0.92538 0.87217
0.92613 1.21425 1.30534 0.92959 1.11406 0.91849 1.25936 0.96228
1.01990 0.95511 1.70085 1.41913 1.23843 1.21718 0.85420 0.79047
0.77538 0.78521 1.19108 1.20851 1.19295 1.21964 0.95675 0.97846
0.90390 1.22143 0.98326 0.88651 0.96996 1.23548 1.00437 0.83983
0.94113 1.88880 1.86289 1.20948 1.34348 0.91938 0.90137 0.93170
0.92175 0.89526 0.91932 0.89263 0.89638 0.94426 0.88347 0.91036
0.95988 0.97833 1.02269 0.92643 0.96567 0.91263 0.94373 0.88760
0.91616 0.88428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.65 8.61 71.98 0.62 -2.03 16
2 C 0.09 1.67 1.19 -10.40 -0.01 1.66 16
3 C -0.14 -2.00 8.68 71.98 0.62 -1.38 16
4 C -0.13 -2.44 5.05 31.61 0.16 -2.28 16
5 C 0.05 1.15 2.80 46.21 0.13 1.28 16
6 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
7 N -0.53 -14.41 4.55 -862.90 -3.93 -18.34 16
8 C 0.07 2.04 5.50 86.31 0.47 2.51 16
9 C 0.05 1.99 5.61 86.31 0.48 2.48 16
10 N -0.55 -24.09 4.70 -900.25 -4.23 -28.33 16
11 C 0.21 11.42 4.72 85.56 0.40 11.82 16
12 C -0.53 -30.08 8.47 25.60 0.22 -29.87 16
13 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16
14 C 0.00 0.08 5.46 84.65 0.46 0.54 16
15 N -0.94 -56.88 13.29 21.45 0.28 -56.59 16
16 Si 0.97 44.40 29.54 68.60 2.03 46.43 16
17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16
18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
20 C 0.07 2.75 5.43 86.31 0.47 3.22 16
21 C 0.07 2.00 5.35 86.31 0.46 2.46 16
22 C 0.06 1.22 5.73 72.66 0.42 1.63 16
23 O -0.39 -8.83 10.86 -148.98 -1.62 -10.45 16
24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16
25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
26 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16
27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.09 1.39 7.70 -2.39 -0.02 1.37 16
31 H 0.09 1.66 7.61 -2.39 -0.02 1.65 16
32 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16
33 H 0.10 2.24 7.39 -2.39 -0.02 2.23 16
34 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16
35 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16
36 H 0.00 0.21 8.03 -2.39 -0.02 0.19 16
37 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16
38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16
39 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16
40 H 0.07 2.94 6.79 -2.39 -0.02 2.92 16
41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
42 H 0.09 2.40 6.73 -2.39 -0.02 2.39 16
43 H 0.07 1.49 8.06 -2.39 -0.02 1.47 16
44 H 0.10 1.94 7.98 -2.39 -0.02 1.93 16
Total: -1.00 -64.97 338.32 -1.62 -66.59
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: 0.93 Total: 8.64 kcal
Atomic # 6 Polarization: -12.86 SS G_CDS: 4.91 Total: -7.95 kcal
Atomic # 7 Polarization: -95.39 SS G_CDS: -7.87 Total: -103.26 kcal
Atomic # 8 Polarization: -8.83 SS G_CDS: -1.62 Total: -10.45 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal
Total: -64.97 -1.62 -66.59 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595391350.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.476 kcal
(2) G-P(sol) polarization free energy of solvation -64.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds