Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48501 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00463 * 3 2 1 6 6 H 1.48506 * 109.47005 * 60.00186 * 3 2 1 7 7 C 1.37880 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99545 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46792 * 180.02562 * 9 7 2 11 11 C 1.46962 * 110.99929 * 170.00093 * 10 9 7 12 12 C 1.53051 * 109.36216 * 183.18405 * 11 10 9 13 13 N 1.46952 * 109.36723 * 301.60009 * 12 11 10 14 14 C 1.46898 * 110.99999 * 183.19113 * 13 12 11 15 15 H 1.09001 * 109.47520 * 54.99948 * 14 13 12 16 16 C 1.53006 * 109.47148 * 294.99386 * 14 13 12 17 17 C 1.53002 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46806 * 60.00282 * 17 16 14 19 19 C 1.52996 * 109.47518 * 299.99991 * 18 17 16 20 20 C 1.52997 * 109.47131 * 59.99828 * 19 18 17 21 21 H 1.09001 * 109.47289 * 60.00050 * 20 19 18 22 22 O 1.42905 * 109.47264 * 180.02562 * 20 19 18 23 23 C 1.46949 * 110.88207 * 59.31883 * 13 12 11 24 24 C 1.46962 * 110.99895 * 293.79612 * 10 9 7 25 25 H 0.96995 * 120.00045 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47431 * 60.00103 * 9 7 2 27 27 H 1.08996 * 109.47021 * 299.99549 * 9 7 2 28 28 H 1.09002 * 109.48678 * 63.22268 * 11 10 9 29 29 H 1.08993 * 109.50552 * 303.16267 * 11 10 9 30 30 H 1.09000 * 109.48852 * 181.63208 * 12 11 10 31 31 H 1.08997 * 109.48902 * 61.56822 * 12 11 10 32 32 H 1.08988 * 109.47058 * 300.00656 * 16 14 13 33 33 H 1.09001 * 109.46289 * 60.00163 * 16 14 13 34 34 H 1.09002 * 109.47097 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47142 * 300.00375 * 17 16 14 36 36 H 1.09001 * 109.47194 * 60.00125 * 18 17 16 37 37 H 1.09004 * 109.46724 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.46997 * 300.00254 * 19 18 17 39 39 H 1.08992 * 109.47534 * 180.02562 * 19 18 17 40 40 H 0.96702 * 113.99404 * 300.00214 * 22 20 19 41 41 H 1.09001 * 109.48966 * 60.64984 * 23 13 12 42 42 H 1.09005 * 109.49296 * 180.71323 * 23 13 12 43 43 H 1.08997 * 109.49123 * 296.78315 * 24 10 9 44 44 H 1.08999 * 109.48784 * 56.82805 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5210 -4.8940 0.2377 12 6 2.5565 -6.0187 0.3092 13 7 3.3195 -6.0592 -0.9460 14 6 4.2741 -7.1757 -0.9461 15 1 3.7440 -8.1070 -0.7465 16 6 5.3279 -6.9459 0.1392 17 6 6.3217 -8.1092 0.1396 18 6 7.0064 -8.1953 -1.2260 19 6 5.9528 -8.4251 -2.3113 20 6 4.9589 -7.2619 -2.3116 21 1 5.4893 -6.3308 -2.5114 22 8 3.9745 -7.4767 -3.3250 23 6 4.0042 -4.7809 -1.1843 24 6 2.9687 -3.6562 -1.2559 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5570 0.8897 28 1 0.8254 -5.0915 -0.5780 29 1 0.9732 -4.8436 1.1786 30 1 2.0487 -6.9718 0.4570 31 1 3.2356 -5.8353 1.1418 32 1 5.8578 -6.0147 -0.0604 33 1 4.8400 -6.8850 1.1120 34 1 7.0722 -7.9457 0.9130 35 1 5.7913 -9.0402 0.3394 36 1 7.5369 -7.2643 -1.4258 37 1 7.7148 -9.0238 -1.2256 38 1 5.4224 -9.3561 -2.1114 39 1 6.4406 -8.4869 -3.2840 40 1 4.3379 -7.5419 -4.2187 41 1 4.6998 -4.5834 -0.3687 42 1 4.5518 -4.8315 -2.1254 43 1 2.2896 -3.8396 -2.0885 44 1 3.4763 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595393066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -74.087939 kcal Electronic energy + Delta-G solvation = -21815.225126 eV Core-core repulsion = 18765.715936 eV Total energy + Delta-G solvation = -3049.509190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12980 -39.06332 -36.65881 -35.91394 -34.47572 -31.92130 -31.12632 -30.41070 -28.71342 -26.34011 -24.73535 -23.93921 -23.20099 -22.37708 -21.08923 -19.88924 -18.50127 -18.10071 -17.56463 -16.61670 -16.22118 -15.93000 -15.72006 -15.58012 -15.21434 -15.02246 -14.90184 -14.43308 -14.12470 -13.92371 -13.77297 -13.50928 -13.09499 -12.97853 -12.75602 -12.56450 -12.52545 -12.38557 -12.23153 -11.95869 -11.85721 -11.73777 -11.57866 -11.44863 -11.18378 -10.89582 -10.66971 -10.62262 -9.18130 -9.00875 -8.21518 -6.32290 1.40507 1.41150 1.55044 2.39697 2.89050 3.10568 3.26789 3.31171 3.75723 3.86632 4.05599 4.08128 4.14274 4.20762 4.24116 4.36138 4.39349 4.42098 4.44347 4.48992 4.57371 4.66317 4.79946 4.83917 4.89580 4.97431 5.02810 5.04102 5.14307 5.16285 5.18408 5.20457 5.26185 5.28373 5.32155 5.49358 5.62937 6.01151 6.11121 6.17071 6.34967 6.60418 6.83608 7.02239 7.37599 8.90294 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.004191 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.427415 B = 6679.099941 C = 6822.703182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.540 5.540 11 C 0.055 3.945 12 C 0.070 3.930 13 N -0.536 5.536 14 C 0.095 3.905 15 H 0.081 0.919 16 C -0.149 4.149 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.142 4.142 20 C 0.113 3.887 21 H 0.051 0.949 22 O -0.573 6.573 23 C 0.071 3.929 24 C 0.071 3.929 25 H 0.265 0.735 26 H -0.043 1.043 27 H 0.004 0.996 28 H 0.015 0.985 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.386 0.614 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.009 0.991 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.068 -18.403 -3.311 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.265 5.265 11 C -0.074 4.074 12 C -0.058 4.058 13 N -0.259 5.259 14 C -0.013 4.013 15 H 0.100 0.900 16 C -0.188 4.188 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.181 4.181 20 C 0.054 3.946 21 H 0.069 0.931 22 O -0.380 6.380 23 C -0.057 4.057 24 C -0.058 4.058 25 H 0.074 0.926 26 H -0.025 1.025 27 H 0.022 0.978 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.234 0.766 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.027 0.973 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.501 -18.273 -2.798 23.495 hybrid contribution -0.071 1.162 -0.441 1.245 sum 14.429 -17.111 -3.239 22.616 Atomic orbital electron populations 1.70104 1.07859 1.27905 1.51780 1.25959 0.95755 1.03340 0.94681 0.85285 0.78956 0.78298 0.77766 1.18576 1.20370 1.20273 1.21461 0.93581 0.90920 1.50095 0.91833 1.19371 0.90145 0.89166 0.93211 1.62243 1.27136 1.02934 1.34228 1.22157 0.95746 0.89739 0.99759 1.22069 0.95340 0.97730 0.90703 1.62292 1.26214 1.03203 1.34203 1.21742 0.91656 0.94045 0.93898 0.90035 1.22170 0.97711 0.99982 0.98916 1.21491 0.97940 0.97709 0.97949 1.21505 0.97482 1.02638 0.93741 1.22209 0.96874 0.98449 1.00523 1.21845 0.88280 0.97108 0.87401 0.93133 1.86632 1.36520 1.95632 1.19210 1.22090 0.94771 0.88033 1.00846 1.21957 0.95693 0.98439 0.89704 0.92644 1.02537 0.97785 0.96644 0.91016 0.89196 0.93745 0.92021 0.91712 0.90938 0.91361 0.91872 0.90068 0.91258 0.90003 0.76573 0.93990 0.89664 0.97270 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.52 -30.60 8.47 25.60 0.22 -30.38 16 8 H 0.06 3.64 7.13 -2.91 -0.02 3.62 16 9 C 0.21 11.73 4.72 85.56 0.40 12.13 16 10 N -0.54 -25.15 4.70 -900.28 -4.23 -29.39 16 11 C 0.05 2.17 5.61 86.31 0.48 2.65 16 12 C 0.07 2.18 5.25 86.31 0.45 2.63 16 13 N -0.54 -16.42 4.57 -870.49 -3.97 -20.40 16 14 C 0.09 2.23 1.92 44.92 0.09 2.32 16 15 H 0.08 1.96 8.11 -2.39 -0.02 1.94 16 16 C -0.15 -3.00 4.50 30.60 0.14 -2.86 16 17 C -0.11 -1.65 5.92 30.60 0.18 -1.47 16 18 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 19 C -0.14 -2.00 5.54 30.59 0.17 -1.83 16 20 C 0.11 2.28 2.60 30.60 0.08 2.36 16 21 H 0.05 1.06 6.36 -2.39 -0.02 1.04 16 22 O -0.57 -13.24 13.18 -148.98 -1.96 -15.21 16 23 C 0.07 2.31 4.81 86.31 0.42 2.73 16 24 C 0.07 2.99 5.43 86.31 0.47 3.46 16 25 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.04 -2.67 8.12 -2.39 -0.02 -2.69 16 27 H 0.00 0.24 8.03 -2.39 -0.02 0.23 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 2.77 8.07 -2.39 -0.02 2.75 16 30 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 31 H 0.04 1.37 6.60 -2.39 -0.02 1.35 16 32 H 0.06 1.35 6.45 -2.39 -0.02 1.34 16 33 H 0.06 1.40 6.59 -2.39 -0.02 1.38 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.39 5.45 9.08 -74.06 -0.67 4.77 16 41 H 0.04 1.36 6.46 -2.39 -0.02 1.35 16 42 H 0.09 2.50 6.18 -2.38 -0.01 2.49 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 3.06 6.79 -2.39 -0.02 3.04 16 Total: -1.00 -69.29 328.30 -3.82 -73.11 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.30 Total: 11.45 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 3.74 Total: -9.06 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -7.92 Total: -107.33 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.96 Total: -15.21 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.29 -3.82 -73.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595393066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.977 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds