Wall clock time and date at job start Mon Mar 30 2020 01:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47330 * 299.99835 * 3 2 1 6 6 H 1.48505 * 109.47026 * 60.00103 * 3 2 1 7 7 C 1.37879 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99766 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.44310 * 111.00250 * 66.04535 * 10 9 7 12 12 C 1.53981 * 108.31287 * 221.34773 * 11 10 9 13 13 C 1.45870 * 112.67279 * 278.59036 * 12 11 10 14 14 C 1.54522 * 111.67005 * 61.49912 * 13 12 11 15 15 H 1.09004 * 109.57627 * 42.71210 * 14 13 12 16 16 N 1.46898 * 109.57612 * 162.95869 * 14 13 12 17 17 C 1.47015 * 110.99642 * 58.38523 * 16 14 13 18 18 C 1.53098 * 109.25723 * 177.60943 * 17 16 14 19 19 O 1.43023 * 109.25952 * 56.85124 * 18 17 16 20 20 C 1.43014 * 113.73189 * 301.32868 * 19 18 17 21 21 C 1.47016 * 110.99994 * 294.75521 * 16 14 13 22 22 C 1.50545 * 108.96606 * 282.83325 * 14 13 12 23 23 C 1.47946 * 111.00330 * 193.45484 * 10 9 7 24 24 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47114 * 59.99309 * 9 7 2 26 26 H 1.08995 * 109.47468 * 299.99731 * 9 7 2 27 27 H 1.09000 * 109.69592 * 101.64102 * 11 10 9 28 28 H 1.09000 * 109.69180 * 341.05217 * 11 10 9 29 29 H 1.09003 * 108.83892 * 157.76847 * 12 11 10 30 30 H 1.09003 * 108.75780 * 39.36080 * 12 11 10 31 31 H 1.09003 * 109.04180 * 300.93990 * 13 12 11 32 32 H 1.08995 * 109.04446 * 182.06413 * 13 12 11 33 33 H 1.08999 * 109.50673 * 297.54208 * 17 16 14 34 34 H 1.09004 * 109.50788 * 57.67624 * 17 16 14 35 35 H 1.08997 * 109.51060 * 296.91507 * 18 17 16 36 36 H 1.08998 * 109.54334 * 176.80599 * 18 17 16 37 37 H 1.08999 * 109.51224 * 298.73604 * 20 19 18 38 38 H 1.09005 * 109.53853 * 178.62625 * 20 19 18 39 39 H 1.09000 * 109.50136 * 302.32362 * 21 16 14 40 40 H 1.08995 * 109.50491 * 62.44945 * 21 16 14 41 41 H 1.08992 * 108.79023 * 212.57550 * 22 14 13 42 42 H 1.08994 * 108.78569 * 330.79664 * 22 14 13 43 43 H 1.08997 * 108.70870 * 313.18281 * 23 10 9 44 44 H 1.08997 * 108.71086 * 71.32049 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9574 -3.6534 1.2317 12 6 4.4247 -3.9750 0.8930 13 6 4.6556 -5.4012 0.6916 14 6 3.8289 -5.9516 -0.4922 15 1 3.8691 -5.2482 -1.3240 16 7 4.3778 -7.2466 -0.9159 17 6 4.3684 -8.2111 0.1936 18 6 4.8914 -9.5605 -0.3060 19 8 6.1986 -9.3842 -0.8591 20 6 6.2442 -8.4518 -1.9424 21 6 5.7349 -7.0912 -1.4595 22 6 2.4006 -6.1294 -0.0508 23 6 1.5291 -4.8916 -0.3208 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 2.5533 -4.4264 1.8854 28 1 2.8988 -2.6845 1.7277 29 1 5.0586 -3.6275 1.7087 30 1 4.6992 -3.4419 -0.0173 31 1 4.3783 -5.9380 1.5989 32 1 5.7146 -5.5654 0.4925 33 1 5.0086 -7.8476 0.9973 34 1 3.3501 -8.3300 0.5639 35 1 4.2213 -9.9495 -1.0725 36 1 4.9399 -10.2633 0.5258 37 1 5.6133 -8.8084 -2.7566 38 1 7.2710 -8.3519 -2.2945 39 1 5.7141 -6.3925 -2.2958 40 1 6.3968 -6.7097 -0.6821 41 1 1.9737 -6.9821 -0.5784 42 1 2.3873 -6.3386 1.0188 43 1 0.6204 -4.9656 0.2764 44 1 1.2540 -4.8855 -1.3755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595470836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:34 Heat of formation + Delta-G solvation = -35.771898 kcal Electronic energy + Delta-G solvation = -21837.850755 eV Core-core repulsion = 18790.003073 eV Total energy + Delta-G solvation = -3047.847682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16862 -38.29024 -35.90085 -33.23251 -32.32132 -31.56376 -31.05969 -27.81378 -26.40162 -25.22892 -24.09960 -23.56568 -21.72816 -21.11672 -19.40341 -18.88205 -16.79991 -16.42066 -16.20477 -15.33419 -15.18300 -15.08256 -14.80250 -14.48185 -14.40985 -14.02439 -13.49444 -13.19865 -12.68026 -12.49353 -12.47786 -12.07574 -11.76599 -11.48480 -11.44859 -11.26164 -10.96999 -10.78805 -10.75930 -10.53605 -10.39403 -10.29296 -10.19683 -10.00053 -9.76155 -9.65797 -9.16191 -8.43653 -8.25196 -7.09375 -6.02138 -4.03206 3.30620 3.38227 3.42929 3.66203 3.84920 4.42349 4.74596 4.82787 4.86565 4.97546 5.02564 5.05202 5.17866 5.23687 5.33124 5.42314 5.49039 5.49297 5.56060 5.66570 5.72199 5.73465 5.80007 5.83527 5.98610 6.13794 6.23825 6.29066 6.35579 6.40679 6.49708 6.59228 6.77348 6.87322 6.95591 7.06970 7.11249 7.34021 7.40146 7.85066 8.16031 8.34345 8.59727 9.05994 9.61155 11.08559 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037924 B = 0.004075 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.140124 B = 6870.341984 C = 7163.896292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.196 3.804 10 N -0.547 5.547 11 C 0.073 3.927 12 C -0.112 4.112 13 C -0.137 4.137 14 C 0.095 3.905 15 H 0.098 0.902 16 N -0.531 5.531 17 C 0.013 3.987 18 C 0.064 3.936 19 O -0.389 6.389 20 C 0.064 3.936 21 C 0.014 3.986 22 C -0.108 4.108 23 C 0.065 3.935 24 H 0.260 0.740 25 H 0.028 0.972 26 H -0.011 1.011 27 H 0.020 0.980 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.023 0.977 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -16.718 -0.407 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.272 5.272 11 C -0.056 4.056 12 C -0.151 4.151 13 C -0.176 4.176 14 C -0.013 4.013 15 H 0.116 0.884 16 N -0.255 5.255 17 C -0.116 4.116 18 C -0.013 4.013 19 O -0.308 6.308 20 C -0.013 4.013 21 C -0.114 4.114 22 C -0.146 4.146 23 C -0.063 4.063 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.007 0.993 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.449 -16.820 -1.076 19.323 hybrid contribution 0.002 1.343 1.234 1.824 sum 9.451 -15.477 0.159 18.135 Atomic orbital electron populations 1.69972 1.06067 1.26606 1.51257 1.24991 0.94833 0.99280 0.95560 0.86472 0.80101 0.83549 0.77479 1.19671 1.21040 1.21174 1.21218 0.93569 0.89880 1.49594 0.91784 1.19724 0.90027 0.87186 0.95911 1.60833 1.29409 1.02984 1.33980 1.21631 0.92422 1.00613 0.90923 1.20430 0.97696 0.95102 1.01866 1.21179 0.99542 0.98231 0.98672 1.21506 0.93683 0.88585 0.97487 0.88362 1.62646 1.20756 1.10254 1.31820 1.22789 1.01947 0.93355 0.93477 1.22669 0.84351 0.96047 0.98264 1.87958 1.29385 1.62910 1.50523 1.22666 1.01474 0.87963 0.89164 1.22792 0.90013 0.98177 1.00419 1.21387 0.94704 0.98239 1.00285 1.22231 0.94480 0.89000 1.00584 0.93025 0.95428 0.99313 0.96162 0.90188 0.93295 0.91061 0.93096 0.92897 0.93724 0.89636 0.92454 0.88837 0.92402 0.88725 0.89528 0.93561 0.91081 0.93153 0.95854 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.50 -13.99 8.12 -34.44 -0.28 -14.27 16 8 H 0.06 1.76 7.61 -52.49 -0.40 1.37 16 9 C 0.20 5.08 4.58 -4.98 -0.02 5.05 16 10 N -0.55 -11.49 4.00 -236.17 -0.94 -12.43 16 11 C 0.07 1.41 5.01 -4.70 -0.02 1.38 16 12 C -0.11 -1.83 5.38 -29.59 -0.16 -1.99 16 13 C -0.14 -1.92 3.70 -29.31 -0.11 -2.03 16 14 C 0.10 1.33 1.93 -68.14 -0.13 1.20 16 15 H 0.10 1.59 7.78 -51.93 -0.40 1.19 16 16 N -0.53 -6.50 4.60 -226.84 -1.04 -7.55 16 17 C 0.01 0.14 4.95 -3.71 -0.02 0.12 16 18 C 0.06 0.63 7.01 37.21 0.26 0.89 16 19 O -0.39 -4.52 10.83 -35.23 -0.38 -4.90 16 20 C 0.06 0.64 7.01 37.21 0.26 0.90 16 21 C 0.01 0.16 5.36 -3.71 -0.02 0.14 16 22 C -0.11 -1.55 3.65 -27.56 -0.10 -1.65 16 23 C 0.07 1.17 5.37 -2.85 -0.02 1.15 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 26 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 27 H 0.02 0.37 6.79 -51.93 -0.35 0.01 16 28 H 0.08 1.73 6.73 -51.93 -0.35 1.38 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 31 H 0.05 0.70 6.88 -51.93 -0.36 0.34 16 32 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 33 H 0.04 0.52 6.81 -51.93 -0.35 0.17 16 34 H 0.09 0.89 6.85 -51.93 -0.36 0.54 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 40 H 0.05 0.54 6.26 -51.93 -0.33 0.22 16 41 H 0.07 0.95 7.76 -51.93 -0.40 0.54 16 42 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 43 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -29.48 324.60 -9.93 -39.41 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.72 Total: -2.36 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.45 Total: -7.67 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -1.25 Total: -45.93 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.38 Total: -4.90 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.48 -9.93 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595470836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.642 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds