Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47330 * 299.99835 * 3 2 1 6 6 H 1.48505 * 109.47026 * 60.00103 * 3 2 1 7 7 C 1.37879 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99766 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.44310 * 111.00250 * 66.04535 * 10 9 7 12 12 C 1.53981 * 108.31287 * 221.34773 * 11 10 9 13 13 C 1.45870 * 112.67279 * 278.59036 * 12 11 10 14 14 C 1.54522 * 111.67005 * 61.49912 * 13 12 11 15 15 H 1.09004 * 109.57627 * 42.71210 * 14 13 12 16 16 N 1.46898 * 109.57612 * 162.95869 * 14 13 12 17 17 C 1.47015 * 110.99642 * 58.38523 * 16 14 13 18 18 C 1.53098 * 109.25723 * 177.60943 * 17 16 14 19 19 O 1.43023 * 109.25952 * 56.85124 * 18 17 16 20 20 C 1.43014 * 113.73189 * 301.32868 * 19 18 17 21 21 C 1.47016 * 110.99994 * 294.75521 * 16 14 13 22 22 C 1.50545 * 108.96606 * 282.83325 * 14 13 12 23 23 C 1.47946 * 111.00330 * 193.45484 * 10 9 7 24 24 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47114 * 59.99309 * 9 7 2 26 26 H 1.08995 * 109.47468 * 299.99731 * 9 7 2 27 27 H 1.09000 * 109.69592 * 101.64102 * 11 10 9 28 28 H 1.09000 * 109.69180 * 341.05217 * 11 10 9 29 29 H 1.09003 * 108.83892 * 157.76847 * 12 11 10 30 30 H 1.09003 * 108.75780 * 39.36080 * 12 11 10 31 31 H 1.09003 * 109.04180 * 300.93990 * 13 12 11 32 32 H 1.08995 * 109.04446 * 182.06413 * 13 12 11 33 33 H 1.08999 * 109.50673 * 297.54208 * 17 16 14 34 34 H 1.09004 * 109.50788 * 57.67624 * 17 16 14 35 35 H 1.08997 * 109.51060 * 296.91507 * 18 17 16 36 36 H 1.08998 * 109.54334 * 176.80599 * 18 17 16 37 37 H 1.08999 * 109.51224 * 298.73604 * 20 19 18 38 38 H 1.09005 * 109.53853 * 178.62625 * 20 19 18 39 39 H 1.09000 * 109.50136 * 302.32362 * 21 16 14 40 40 H 1.08995 * 109.50491 * 62.44945 * 21 16 14 41 41 H 1.08992 * 108.79023 * 212.57550 * 22 14 13 42 42 H 1.08994 * 108.78569 * 330.79664 * 22 14 13 43 43 H 1.08997 * 108.70870 * 313.18281 * 23 10 9 44 44 H 1.08997 * 108.71086 * 71.32049 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9574 -3.6534 1.2317 12 6 4.4247 -3.9750 0.8930 13 6 4.6556 -5.4012 0.6916 14 6 3.8289 -5.9516 -0.4922 15 1 3.8691 -5.2482 -1.3240 16 7 4.3778 -7.2466 -0.9159 17 6 4.3684 -8.2111 0.1936 18 6 4.8914 -9.5605 -0.3060 19 8 6.1986 -9.3842 -0.8591 20 6 6.2442 -8.4518 -1.9424 21 6 5.7349 -7.0912 -1.4595 22 6 2.4006 -6.1294 -0.0508 23 6 1.5291 -4.8916 -0.3208 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 2.5533 -4.4264 1.8854 28 1 2.8988 -2.6845 1.7277 29 1 5.0586 -3.6275 1.7087 30 1 4.6992 -3.4419 -0.0173 31 1 4.3783 -5.9380 1.5989 32 1 5.7146 -5.5654 0.4925 33 1 5.0086 -7.8476 0.9973 34 1 3.3501 -8.3300 0.5639 35 1 4.2213 -9.9495 -1.0725 36 1 4.9399 -10.2633 0.5258 37 1 5.6133 -8.8084 -2.7566 38 1 7.2710 -8.3519 -2.2945 39 1 5.7141 -6.3925 -2.2958 40 1 6.3968 -6.7097 -0.6821 41 1 1.9737 -6.9821 -0.5784 42 1 2.3873 -6.3386 1.0188 43 1 0.6204 -4.9656 0.2764 44 1 1.2540 -4.8855 -1.3755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595470836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -56.143018 kcal Electronic energy + Delta-G solvation = -21838.734113 eV Core-core repulsion = 18790.003073 eV Total energy + Delta-G solvation = -3048.731040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20217 -39.50497 -37.18831 -34.97562 -33.92302 -32.82127 -32.00230 -29.43101 -27.74496 -26.77379 -25.14944 -24.71617 -23.58659 -22.14790 -20.69670 -20.12753 -18.53274 -17.76985 -17.13888 -16.80479 -16.51737 -16.12984 -15.93385 -15.79840 -15.55682 -15.39062 -14.92843 -14.55457 -14.21867 -14.09143 -13.73346 -13.40493 -13.11421 -12.91939 -12.76031 -12.52839 -12.36405 -12.28803 -12.17394 -12.06275 -11.92273 -11.59339 -11.45383 -11.39425 -11.24042 -11.15347 -10.61942 -10.60473 -9.22630 -8.85219 -8.19577 -6.29504 1.40337 1.41114 1.54550 2.40164 2.78642 3.02198 3.12547 3.29909 3.67108 3.87669 4.00012 4.10339 4.13166 4.19621 4.27166 4.28931 4.34213 4.39754 4.52736 4.61958 4.65385 4.75795 4.78883 4.79978 4.82146 4.88715 4.96444 5.05034 5.08892 5.10652 5.18719 5.21110 5.26212 5.35909 5.37489 5.53370 5.68864 6.07543 6.07840 6.09746 6.22742 6.46953 6.75069 6.90026 7.40368 8.91308 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037924 B = 0.004075 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.140124 B = 6870.341984 C = 7163.896292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.549 5.549 11 C 0.074 3.926 12 C -0.100 4.100 13 C -0.131 4.131 14 C 0.102 3.898 15 H 0.074 0.926 16 N -0.534 5.534 17 C 0.012 3.988 18 C 0.064 3.936 19 O -0.405 6.405 20 C 0.066 3.934 21 C 0.013 3.987 22 C -0.095 4.095 23 C 0.064 3.936 24 H 0.264 0.736 25 H 0.000 1.000 26 H -0.041 1.041 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 -17.828 -0.207 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.085 3.915 10 N -0.274 5.274 11 C -0.055 4.055 12 C -0.139 4.139 13 C -0.169 4.169 14 C -0.006 4.006 15 H 0.093 0.907 16 N -0.258 5.258 17 C -0.116 4.116 18 C -0.013 4.013 19 O -0.324 6.324 20 C -0.011 4.011 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.064 4.064 24 H 0.072 0.928 25 H 0.018 0.982 26 H -0.023 1.023 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.206 -17.958 -0.875 21.186 hybrid contribution -0.570 1.635 1.165 2.087 sum 10.637 -16.323 0.289 19.485 Atomic orbital electron populations 1.70098 1.07750 1.27761 1.52091 1.25902 0.95696 1.03141 0.94951 0.85356 0.79015 0.78708 0.77675 1.18699 1.20466 1.20474 1.21485 0.93608 0.90938 1.49477 0.91878 1.19374 0.90073 0.88926 0.93113 1.60791 1.28321 1.03216 1.35095 1.21637 0.94179 0.99499 0.90175 1.20305 0.95438 0.96702 1.01435 1.21091 1.00332 0.96415 0.99104 1.21294 0.93502 0.89246 0.96556 0.90731 1.62621 1.21532 1.09294 1.32317 1.22858 1.02368 0.93473 0.92864 1.22783 0.83791 0.95724 0.99017 1.87944 1.30302 1.63173 1.50960 1.22747 1.02623 0.86879 0.88824 1.22842 0.89255 0.99099 1.00263 1.21264 0.94491 0.96494 1.01047 1.22311 0.94980 0.89023 1.00099 0.92751 0.98200 1.02300 0.94846 0.93155 0.91852 0.92927 0.92063 0.91696 0.94163 0.88946 0.92079 0.86925 0.92091 0.86937 0.89500 0.94004 0.89448 0.92281 0.96555 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.52 -29.41 8.12 25.60 0.21 -29.21 16 8 H 0.06 3.53 7.61 -2.91 -0.02 3.51 16 9 C 0.21 11.41 4.58 85.56 0.39 11.80 16 10 N -0.55 -23.63 4.00 -901.11 -3.60 -27.23 16 11 C 0.07 2.84 5.01 87.12 0.44 3.28 16 12 C -0.10 -3.17 5.38 28.74 0.15 -3.01 16 13 C -0.13 -3.38 3.70 28.93 0.11 -3.28 16 14 C 0.10 2.70 1.93 44.64 0.09 2.79 16 15 H 0.07 2.36 7.78 -2.39 -0.02 2.35 16 16 N -0.53 -11.93 4.60 -871.60 -4.01 -15.94 16 17 C 0.01 0.24 4.95 86.31 0.43 0.67 16 18 C 0.06 1.08 7.01 72.01 0.50 1.59 16 19 O -0.40 -8.36 10.83 -148.98 -1.61 -9.97 16 20 C 0.07 1.16 7.01 72.01 0.50 1.67 16 21 C 0.01 0.27 5.36 86.31 0.46 0.74 16 22 C -0.09 -2.58 3.65 30.06 0.11 -2.47 16 23 C 0.06 2.29 5.37 86.36 0.46 2.76 16 24 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.00 -0.01 8.04 -2.38 -0.02 -0.03 16 26 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 27 H 0.03 1.19 6.79 -2.39 -0.02 1.17 16 28 H 0.05 2.23 6.73 -2.39 -0.02 2.21 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.06 1.50 6.88 -2.39 -0.02 1.48 16 32 H 0.06 1.57 5.97 -2.39 -0.01 1.56 16 33 H 0.04 0.82 6.81 -2.39 -0.02 0.80 16 34 H 0.09 1.64 6.85 -2.38 -0.02 1.63 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 40 H 0.04 0.89 6.26 -2.39 -0.01 0.88 16 41 H 0.09 2.13 7.76 -2.39 -0.02 2.11 16 42 H 0.06 1.52 6.54 -2.39 -0.02 1.51 16 43 H 0.02 0.60 8.02 -2.39 -0.02 0.59 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -64.10 324.60 -1.64 -65.75 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.95 Total: 9.57 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.32 Total: -12.18 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -7.33 Total: -99.70 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.61 Total: -9.97 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -64.10 -1.64 -65.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595470836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.603 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds