Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48504 * 109.46912 * 239.99536 * 3 2 1 5 5 H 1.48497 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47242 * 119.99804 * 3 2 1 7 7 C 1.37881 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00439 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99839 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47180 * 180.02562 * 9 7 2 11 11 C 1.47999 * 111.00062 * 293.95190 * 10 9 7 12 12 C 1.50446 * 112.82370 * 191.34947 * 11 10 9 13 13 C 1.54306 * 108.49593 * 93.73241 * 12 11 10 14 14 C 1.45874 * 112.19234 * 281.45289 * 13 12 11 15 15 H 1.09001 * 108.94287 * 300.42266 * 14 13 12 16 16 N 1.46901 * 108.94114 * 181.81590 * 14 13 12 17 17 C 1.47010 * 111.00191 * 68.78469 * 16 14 13 18 18 C 1.53103 * 109.25852 * 177.60858 * 17 16 14 19 19 O 1.43018 * 109.25445 * 56.84812 * 18 17 16 20 20 C 1.43015 * 113.74006 * 301.32939 * 19 18 17 21 21 C 1.47014 * 110.99639 * 305.14799 * 16 14 13 22 22 C 1.54317 * 112.18330 * 61.11475 * 14 13 12 23 23 C 1.48205 * 110.83143 * 165.18240 * 10 9 7 24 24 H 0.96992 * 119.99490 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47260 * 59.99944 * 9 7 2 26 26 H 1.09002 * 109.47349 * 299.99804 * 9 7 2 27 27 H 1.08998 * 108.81322 * 70.48152 * 11 10 9 28 28 H 1.09000 * 108.81037 * 312.21014 * 11 10 9 29 29 H 1.09000 * 109.62834 * 334.02936 * 12 11 10 30 30 H 1.08998 * 109.79618 * 213.53645 * 12 11 10 31 31 H 1.08995 * 108.93628 * 160.75406 * 13 12 11 32 32 H 1.09005 * 108.93475 * 42.14930 * 13 12 11 33 33 H 1.09002 * 109.50786 * 297.54514 * 17 16 14 34 34 H 1.09003 * 109.50581 * 57.67809 * 17 16 14 35 35 H 1.08991 * 109.50670 * 296.91734 * 18 17 16 36 36 H 1.09001 * 109.50501 * 176.78402 * 18 17 16 37 37 H 1.08998 * 109.50626 * 298.73361 * 20 19 18 38 38 H 1.09003 * 109.53585 * 178.62781 * 20 19 18 39 39 H 1.09001 * 109.50939 * 302.32863 * 21 16 14 40 40 H 1.09004 * 109.50303 * 62.45855 * 21 16 14 41 41 H 1.09003 * 109.63030 * 41.18754 * 22 14 13 42 42 H 1.09003 * 109.63115 * 161.57616 * 22 14 13 43 43 H 1.09003 * 109.12558 * 324.09710 * 23 10 9 44 44 H 1.09003 * 108.61315 * 205.76352 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9776 -3.6549 -1.2603 12 6 3.7666 -4.9256 -1.4225 13 6 2.9197 -5.9273 -2.2351 14 6 1.8966 -6.5726 -1.4196 15 1 2.3807 -7.1064 -0.6018 16 7 1.1647 -7.5388 -2.2495 17 6 2.0208 -8.6778 -2.6111 18 6 1.2034 -9.6861 -3.4230 19 8 0.6565 -9.0336 -4.5721 20 6 -0.1831 -7.9196 -4.2565 21 6 0.6202 -6.8935 -3.4530 22 6 0.8946 -5.5572 -0.8312 23 6 1.5300 -4.8863 0.3561 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 3.6652 -2.8094 -1.2782 28 1 2.2866 -3.5609 -2.0980 29 1 3.9899 -5.3456 -0.4418 30 1 4.6963 -4.7177 -1.9522 31 1 3.5768 -6.6923 -2.6487 32 1 2.4359 -5.3975 -3.0557 33 1 2.8618 -8.3259 -3.2085 34 1 2.3921 -9.1562 -1.7047 35 1 0.3939 -10.0782 -2.8075 36 1 1.8485 -10.5049 -3.7419 37 1 -1.0330 -8.2604 -3.6653 38 1 -0.5414 -7.4606 -5.1780 39 1 -0.0307 -6.0693 -3.1613 40 1 1.4389 -6.5130 -4.0639 41 1 0.6457 -4.8097 -1.5844 42 1 -0.0111 -6.0763 -0.5173 43 1 0.7594 -4.6856 1.1005 44 1 2.2665 -5.5629 0.7896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595470837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -31.420742 kcal Electronic energy + Delta-G solvation = -21897.257383 eV Core-core repulsion = 18849.598381 eV Total energy + Delta-G solvation = -3047.659002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40714 -38.39309 -35.90248 -33.17543 -32.08106 -31.48897 -31.13057 -27.99105 -26.36136 -25.18338 -24.25144 -23.53882 -21.90570 -21.26555 -19.34027 -18.90102 -16.94166 -16.38672 -16.30949 -15.43383 -15.24187 -15.08615 -14.72477 -14.67744 -14.41916 -13.64665 -13.48763 -13.28713 -12.73503 -12.65230 -12.35540 -12.06697 -11.81332 -11.62789 -11.45230 -11.33876 -10.94774 -10.82910 -10.78968 -10.54421 -10.46781 -10.38316 -10.33911 -10.00465 -9.79441 -9.64777 -9.16242 -8.41176 -8.34561 -7.06457 -6.00236 -4.01547 3.34221 3.38232 3.41246 3.62464 3.79309 4.43802 4.65815 4.78264 4.79697 4.93906 4.99877 5.05164 5.10797 5.16710 5.27546 5.34770 5.40099 5.46170 5.55210 5.62266 5.64083 5.71286 5.75229 5.86651 5.91027 6.07502 6.12768 6.16269 6.24894 6.31242 6.47940 6.58095 6.74548 6.80011 6.91235 6.99386 7.01658 7.34859 7.40213 7.84647 8.15840 8.25722 8.61183 9.06371 9.62718 11.10315 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034400 B = 0.004135 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.767836 B = 6769.277227 C = 6985.212652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.197 3.803 10 N -0.547 5.547 11 C 0.075 3.925 12 C -0.114 4.114 13 C -0.153 4.153 14 C 0.092 3.908 15 H 0.078 0.922 16 N -0.532 5.532 17 C 0.013 3.987 18 C 0.065 3.935 19 O -0.389 6.389 20 C 0.064 3.936 21 C 0.012 3.988 22 C -0.134 4.134 23 C 0.061 3.939 24 H 0.261 0.739 25 H -0.012 1.012 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -17.488 -6.156 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.272 5.272 11 C -0.052 4.052 12 C -0.153 4.153 13 C -0.192 4.192 14 C -0.015 4.015 15 H 0.096 0.904 16 N -0.257 5.257 17 C -0.115 4.115 18 C -0.012 4.012 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.117 4.117 22 C -0.174 4.174 23 C -0.068 4.068 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.436 -17.534 -5.723 18.605 hybrid contribution 0.447 1.266 -0.855 1.592 sum 2.884 -16.268 -6.578 17.783 Atomic orbital electron populations 1.69947 1.06038 1.26792 1.51166 1.24986 0.94845 0.99237 0.95537 0.86587 0.79460 0.82888 0.78616 1.20356 1.21386 1.20175 1.21171 0.93459 0.90090 1.49847 0.92047 1.19711 0.89895 0.87347 0.95823 1.62047 1.29068 1.03181 1.32893 1.21535 0.96436 0.96471 0.90794 1.21380 0.97773 0.95970 1.00127 1.21325 0.98415 0.99450 0.99990 1.20721 0.93227 0.92443 0.95143 0.90394 1.62615 1.35852 1.09164 1.18024 1.22804 0.95380 0.93279 1.00019 1.22643 0.97054 0.94222 0.87308 1.87962 1.66013 1.45540 1.31207 1.22683 0.92516 0.86505 0.99577 1.22839 0.99438 0.97790 0.91592 1.21956 0.98330 0.97384 0.99699 1.21824 0.97019 0.91929 0.95986 0.92937 0.99387 0.95348 0.90999 0.95979 0.91043 0.91901 0.92715 0.91773 0.93793 0.89824 0.92396 0.88779 0.92347 0.88607 0.89284 0.93499 0.91764 0.91118 0.91654 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.28 8.64 -34.44 -0.30 -14.58 16 8 H 0.06 1.71 7.11 -52.48 -0.37 1.34 16 9 C 0.20 5.13 4.64 -4.98 -0.02 5.10 16 10 N -0.55 -11.62 4.67 -237.17 -1.11 -12.72 16 11 C 0.08 1.44 4.60 -4.49 -0.02 1.42 16 12 C -0.11 -1.69 5.63 -27.32 -0.15 -1.85 16 13 C -0.15 -2.05 3.93 -29.42 -0.12 -2.17 16 14 C 0.09 1.22 1.76 -70.40 -0.12 1.09 16 15 H 0.08 1.01 7.39 -51.93 -0.38 0.63 16 16 N -0.53 -6.50 4.65 -229.58 -1.07 -7.57 16 17 C 0.01 0.14 5.32 -3.71 -0.02 0.12 16 18 C 0.06 0.63 7.01 37.21 0.26 0.89 16 19 O -0.39 -4.63 10.83 -35.23 -0.38 -5.01 16 20 C 0.06 0.69 7.01 37.21 0.26 0.95 16 21 C 0.01 0.14 4.79 -3.71 -0.02 0.12 16 22 C -0.13 -2.08 4.29 -27.32 -0.12 -2.20 16 23 C 0.06 1.08 5.17 -4.38 -0.02 1.05 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H -0.01 -0.32 7.82 -51.93 -0.41 -0.73 16 26 H 0.03 0.79 7.67 -51.93 -0.40 0.39 16 27 H 0.07 1.49 7.17 -51.93 -0.37 1.12 16 28 H 0.02 0.45 6.37 -51.93 -0.33 0.12 16 29 H 0.07 1.06 7.09 -51.93 -0.37 0.70 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.67 6.35 -51.93 -0.33 0.34 16 32 H 0.06 0.93 5.60 -51.93 -0.29 0.64 16 33 H 0.04 0.48 6.55 -51.93 -0.34 0.14 16 34 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.14 6.87 -51.93 -0.36 0.78 16 40 H 0.05 0.60 6.38 -51.93 -0.33 0.27 16 41 H 0.06 1.14 6.22 -51.93 -0.32 0.82 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.19 7.57 -51.93 -0.39 0.80 16 44 H 0.06 0.91 6.61 -51.93 -0.34 0.56 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -29.95 320.55 -9.93 -39.88 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.43 Total: -1.47 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.49 Total: -8.57 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -1.44 Total: -46.37 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.38 Total: -5.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.95 -9.93 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595470837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.460 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds