Wall clock time and date at job start Mon Mar 30 2020 01:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48504 * 109.46912 * 239.99536 * 3 2 1 5 5 H 1.48497 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47242 * 119.99804 * 3 2 1 7 7 C 1.37881 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00439 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99839 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47180 * 180.02562 * 9 7 2 11 11 C 1.47999 * 111.00062 * 293.95190 * 10 9 7 12 12 C 1.50446 * 112.82370 * 191.34947 * 11 10 9 13 13 C 1.54306 * 108.49593 * 93.73241 * 12 11 10 14 14 C 1.45874 * 112.19234 * 281.45289 * 13 12 11 15 15 H 1.09001 * 108.94287 * 300.42266 * 14 13 12 16 16 N 1.46901 * 108.94114 * 181.81590 * 14 13 12 17 17 C 1.47010 * 111.00191 * 68.78469 * 16 14 13 18 18 C 1.53103 * 109.25852 * 177.60858 * 17 16 14 19 19 O 1.43018 * 109.25445 * 56.84812 * 18 17 16 20 20 C 1.43015 * 113.74006 * 301.32939 * 19 18 17 21 21 C 1.47014 * 110.99639 * 305.14799 * 16 14 13 22 22 C 1.54317 * 112.18330 * 61.11475 * 14 13 12 23 23 C 1.48205 * 110.83143 * 165.18240 * 10 9 7 24 24 H 0.96992 * 119.99490 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47260 * 59.99944 * 9 7 2 26 26 H 1.09002 * 109.47349 * 299.99804 * 9 7 2 27 27 H 1.08998 * 108.81322 * 70.48152 * 11 10 9 28 28 H 1.09000 * 108.81037 * 312.21014 * 11 10 9 29 29 H 1.09000 * 109.62834 * 334.02936 * 12 11 10 30 30 H 1.08998 * 109.79618 * 213.53645 * 12 11 10 31 31 H 1.08995 * 108.93628 * 160.75406 * 13 12 11 32 32 H 1.09005 * 108.93475 * 42.14930 * 13 12 11 33 33 H 1.09002 * 109.50786 * 297.54514 * 17 16 14 34 34 H 1.09003 * 109.50581 * 57.67809 * 17 16 14 35 35 H 1.08991 * 109.50670 * 296.91734 * 18 17 16 36 36 H 1.09001 * 109.50501 * 176.78402 * 18 17 16 37 37 H 1.08998 * 109.50626 * 298.73361 * 20 19 18 38 38 H 1.09003 * 109.53585 * 178.62781 * 20 19 18 39 39 H 1.09001 * 109.50939 * 302.32863 * 21 16 14 40 40 H 1.09004 * 109.50303 * 62.45855 * 21 16 14 41 41 H 1.09003 * 109.63030 * 41.18754 * 22 14 13 42 42 H 1.09003 * 109.63115 * 161.57616 * 22 14 13 43 43 H 1.09003 * 109.12558 * 324.09710 * 23 10 9 44 44 H 1.09003 * 108.61315 * 205.76352 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9776 -3.6549 -1.2603 12 6 3.7666 -4.9256 -1.4225 13 6 2.9197 -5.9273 -2.2351 14 6 1.8966 -6.5726 -1.4196 15 1 2.3807 -7.1064 -0.6018 16 7 1.1647 -7.5388 -2.2495 17 6 2.0208 -8.6778 -2.6111 18 6 1.2034 -9.6861 -3.4230 19 8 0.6565 -9.0336 -4.5721 20 6 -0.1831 -7.9196 -4.2565 21 6 0.6202 -6.8935 -3.4530 22 6 0.8946 -5.5572 -0.8312 23 6 1.5300 -4.8863 0.3561 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 3.6652 -2.8094 -1.2782 28 1 2.2866 -3.5609 -2.0980 29 1 3.9899 -5.3456 -0.4418 30 1 4.6963 -4.7177 -1.9522 31 1 3.5768 -6.6923 -2.6487 32 1 2.4359 -5.3975 -3.0557 33 1 2.8618 -8.3259 -3.2085 34 1 2.3921 -9.1562 -1.7047 35 1 0.3939 -10.0782 -2.8075 36 1 1.8485 -10.5049 -3.7419 37 1 -1.0330 -8.2604 -3.6653 38 1 -0.5414 -7.4606 -5.1780 39 1 -0.0307 -6.0693 -3.1613 40 1 1.4389 -6.5130 -4.0639 41 1 0.6457 -4.8097 -1.5844 42 1 -0.0111 -6.0763 -0.5173 43 1 0.7594 -4.6856 1.1005 44 1 2.2665 -5.5629 0.7896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595470837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:36 Heat of formation + Delta-G solvation = -53.100898 kcal Electronic energy + Delta-G solvation = -21898.197505 eV Core-core repulsion = 18849.598381 eV Total energy + Delta-G solvation = -3048.599124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46560 -39.56056 -37.20271 -34.99877 -33.64464 -32.72719 -32.12317 -29.61808 -27.68346 -26.73621 -25.29562 -24.75207 -23.76513 -22.27560 -20.45449 -20.35709 -18.57601 -17.86911 -17.27215 -16.84746 -16.46640 -16.19377 -15.96360 -15.89220 -15.67061 -15.11182 -14.90839 -14.54587 -14.12887 -14.07628 -13.95963 -13.29437 -13.16723 -13.06466 -12.80185 -12.57079 -12.46867 -12.37592 -12.31205 -12.02164 -11.90536 -11.75560 -11.61716 -11.41858 -11.17873 -11.16244 -10.65696 -10.59410 -9.32426 -8.84728 -8.19642 -6.30485 1.39825 1.43114 1.51051 2.39901 2.71498 2.95983 3.11544 3.28217 3.56138 3.79987 3.93297 4.02130 4.06354 4.08068 4.21906 4.27888 4.34082 4.39157 4.52738 4.56076 4.59371 4.67390 4.71604 4.74258 4.79631 4.83236 4.94272 4.97199 5.00843 5.09453 5.10975 5.17879 5.24926 5.29943 5.36955 5.42586 5.66981 5.95317 6.02665 6.08789 6.17050 6.38471 6.73177 6.86753 7.39584 8.90568 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034400 B = 0.004135 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.767836 B = 6769.277227 C = 6985.212652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.215 3.785 10 N -0.554 5.554 11 C 0.081 3.919 12 C -0.104 4.104 13 C -0.145 4.145 14 C 0.100 3.900 15 H 0.093 0.907 16 N -0.537 5.537 17 C 0.014 3.986 18 C 0.062 3.938 19 O -0.404 6.404 20 C 0.067 3.933 21 C 0.014 3.986 22 C -0.124 4.124 23 C 0.061 3.939 24 H 0.264 0.736 25 H -0.043 1.043 26 H 0.001 0.999 27 H 0.051 0.949 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -18.931 -6.364 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.089 3.911 10 N -0.279 5.279 11 C -0.046 4.046 12 C -0.142 4.142 13 C -0.183 4.183 14 C -0.008 4.008 15 H 0.111 0.889 16 N -0.261 5.261 17 C -0.114 4.114 18 C -0.015 4.015 19 O -0.323 6.323 20 C -0.010 4.010 21 C -0.115 4.115 22 C -0.163 4.163 23 C -0.067 4.067 24 H 0.073 0.927 25 H -0.026 1.026 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.113 -19.009 -5.933 20.334 hybrid contribution -0.103 1.664 -0.780 1.841 sum 4.010 -17.345 -6.713 19.026 Atomic orbital electron populations 1.70081 1.07735 1.27899 1.51850 1.25917 0.95732 1.03172 0.94823 0.85459 0.78196 0.77993 0.79115 1.19334 1.20790 1.19226 1.21496 0.93599 0.91312 1.49977 0.92076 1.19318 0.89883 0.88998 0.92931 1.61956 1.28232 1.03582 1.34140 1.21525 0.95656 0.98407 0.89048 1.21309 0.97929 0.93838 1.01140 1.21237 0.98434 0.99362 0.99280 1.20582 0.92376 0.92097 0.95740 0.88909 1.62587 1.36242 1.09258 1.17996 1.22903 0.95024 0.92562 1.00923 1.22825 0.97440 0.94395 0.86793 1.87946 1.66213 1.45682 1.32460 1.22696 0.92207 0.86088 0.99981 1.22794 0.99128 0.97883 0.91676 1.21786 0.99239 0.97247 0.98045 1.21891 0.97423 0.90772 0.96601 0.92729 1.02583 0.98114 0.93055 0.97883 0.90258 0.89946 0.90515 0.93276 0.94011 0.88061 0.92044 0.86488 0.92061 0.87453 0.90803 0.94287 0.94694 0.90602 0.92947 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.53 -30.44 8.64 25.60 0.22 -30.22 16 8 H 0.06 3.47 7.11 -2.91 -0.02 3.45 16 9 C 0.22 11.74 4.64 85.56 0.40 12.14 16 10 N -0.55 -24.09 4.67 -904.26 -4.23 -28.31 16 11 C 0.08 3.14 4.60 85.27 0.39 3.54 16 12 C -0.10 -2.89 5.63 30.21 0.17 -2.72 16 13 C -0.14 -3.61 3.93 28.85 0.11 -3.49 16 14 C 0.10 2.46 1.76 43.18 0.08 2.53 16 15 H 0.09 2.08 7.39 -2.39 -0.02 2.06 16 16 N -0.54 -12.12 4.65 -880.24 -4.09 -16.22 16 17 C 0.01 0.24 5.32 86.32 0.46 0.70 16 18 C 0.06 1.03 7.01 72.02 0.50 1.54 16 19 O -0.40 -8.83 10.83 -148.98 -1.61 -10.44 16 20 C 0.07 1.37 7.01 72.01 0.50 1.88 16 21 C 0.01 0.32 4.79 86.31 0.41 0.73 16 22 C -0.12 -3.85 4.29 30.21 0.13 -3.72 16 23 C 0.06 2.15 5.17 85.22 0.44 2.59 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.04 -2.59 7.82 -2.39 -0.02 -2.61 16 26 H 0.00 0.05 7.67 -2.39 -0.02 0.03 16 27 H 0.05 2.17 7.17 -2.39 -0.02 2.15 16 28 H 0.00 0.12 6.37 -2.39 -0.02 0.11 16 29 H 0.08 2.13 7.09 -2.39 -0.02 2.11 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.63 6.35 -2.39 -0.02 1.62 16 32 H 0.05 1.40 5.60 -2.38 -0.01 1.38 16 33 H 0.04 0.78 6.55 -2.39 -0.02 0.77 16 34 H 0.10 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 39 H 0.07 1.95 6.87 -2.39 -0.02 1.93 16 40 H 0.04 0.98 6.38 -2.39 -0.02 0.96 16 41 H 0.03 1.29 6.22 -2.39 -0.01 1.28 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 1.96 7.57 -2.39 -0.02 1.94 16 44 H 0.08 2.51 6.61 -2.39 -0.02 2.50 16 Total: -1.00 -65.92 320.55 -2.37 -68.29 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.97 Total: 10.69 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.28 Total: -13.96 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -8.04 Total: -101.47 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.61 Total: -10.44 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.92 -2.37 -68.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595470837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.192 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds