Wall clock time and date at job start Mon Mar 30 2020 01:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48500 * 109.47196 * 269.99605 * 3 2 1 5 5 H 1.48496 * 109.47306 * 30.00202 * 3 2 1 6 6 H 1.48508 * 109.47262 * 150.00036 * 3 2 1 7 7 C 1.37884 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46867 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46941 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99649 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99913 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99768 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99872 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46840 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 20 20 C 1.53778 * 113.61727 * 274.13766 * 19 18 17 21 21 C 1.53956 * 87.02468 * 220.04570 * 20 19 18 22 22 C 1.53784 * 113.61658 * 176.52792 * 19 18 17 23 23 H 0.96993 * 120.00410 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47391 * 59.99045 * 9 7 2 25 25 H 1.09001 * 109.46265 * 299.99489 * 9 7 2 26 26 H 1.08996 * 109.47525 * 59.99910 * 10 9 7 27 27 H 1.09000 * 109.46904 * 299.99190 * 10 9 7 28 28 H 1.09002 * 109.47355 * 59.99245 * 11 10 9 29 29 H 1.09000 * 109.46906 * 299.99444 * 11 10 9 30 30 H 0.96992 * 120.00454 * 359.97438 * 12 11 10 31 31 H 0.97005 * 119.99680 * 0.02562 * 15 13 12 32 32 H 1.09001 * 109.46813 * 60.00258 * 16 15 13 33 33 H 1.08992 * 109.47397 * 300.00319 * 16 15 13 34 34 H 1.09002 * 109.47398 * 300.00326 * 17 16 15 35 35 H 1.09001 * 109.47194 * 60.00507 * 17 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 38 38 H 1.09000 * 112.84915 * 45.33452 * 19 18 17 39 39 H 1.08996 * 113.61184 * 334.56845 * 20 19 18 40 40 H 1.09000 * 113.61578 * 105.46835 * 20 19 18 41 41 H 1.09002 * 113.53647 * 270.81670 * 21 20 19 42 42 H 1.08996 * 113.66740 * 139.92974 * 21 20 19 43 43 H 1.08998 * 113.61407 * 254.52625 * 22 19 18 44 44 H 1.08996 * 113.61156 * 25.35491 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0015 14 8 0.7876 -7.5935 0.0024 15 7 2.8588 -8.3958 0.0004 16 6 2.3705 -9.7770 0.0020 17 6 3.5605 -10.7386 -0.0004 18 6 3.0506 -12.1811 0.0007 19 6 4.2405 -13.1427 -0.0010 20 6 4.7814 -13.4511 -1.4071 21 6 4.9510 -14.9067 -0.9352 22 6 3.8357 -14.6239 0.0851 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5572 -0.8895 25 1 0.6241 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8885 29 1 0.8540 -5.0446 0.8914 30 1 3.3859 -5.9234 -0.0005 31 1 3.8125 -8.2185 -0.0007 32 1 1.7633 -9.9486 -0.8868 33 1 1.7665 -9.9478 0.8930 34 1 4.1641 -10.5676 -0.8917 35 1 4.1680 -10.5671 0.8883 36 1 2.4467 -12.3524 0.8918 37 1 2.4433 -12.3524 -0.8881 38 1 5.0146 -12.8595 0.7121 39 1 4.0391 -13.3317 -2.1963 40 1 5.7236 -12.9514 -1.6318 41 1 5.9204 -15.1060 -0.4784 42 1 4.6769 -15.6456 -1.6882 43 1 4.0158 -15.0695 1.0634 44 1 2.8339 -14.8254 -0.2940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595488908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:01 Heat of formation + Delta-G solvation = -50.523881 kcal Electronic energy + Delta-G solvation = -19246.130270 eV Core-core repulsion = 16197.642894 eV Total energy + Delta-G solvation = -3048.487376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81460 -39.31165 -36.06681 -35.06109 -33.33987 -32.67082 -31.00570 -27.90031 -26.36300 -25.98930 -23.71679 -22.70620 -21.65361 -20.75990 -20.28640 -19.76773 -17.93109 -16.57346 -16.22156 -16.00414 -15.76917 -15.13248 -15.03186 -14.48542 -14.09735 -14.04901 -13.93550 -13.25804 -13.03213 -12.84578 -12.36190 -12.26167 -11.93525 -11.78150 -11.65133 -11.63139 -11.15176 -10.93774 -10.88880 -10.69936 -10.57845 -10.53797 -10.44456 -10.04809 -9.83490 -9.41822 -9.15236 -9.10624 -8.55177 -8.35627 -6.00206 -4.03245 2.87227 3.31704 3.38016 3.40833 3.42525 4.14018 4.23391 4.29061 4.41825 4.45438 4.49164 4.70041 4.74108 4.97636 5.19721 5.27332 5.34875 5.35298 5.35458 5.42133 5.44567 5.51114 5.58112 5.66643 5.75191 5.81910 5.84969 5.91623 5.97320 6.12909 6.21682 6.49989 6.56943 6.65412 6.84597 7.05210 7.12212 7.65872 7.78976 7.98859 8.20187 8.39829 8.80541 9.03465 9.60716 11.11073 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.063658 B = 0.002012 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.742057 B =13914.879396 C =14214.211430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.698 3.302 14 O -0.594 6.594 15 N -0.753 5.753 16 C 0.138 3.862 17 C -0.129 4.129 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.139 4.139 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.393 0.607 31 H 0.394 0.606 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.290 -27.939 -0.582 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.397 5.397 13 C 0.398 3.602 14 O -0.473 6.473 15 N -0.410 5.410 16 C 0.014 3.986 17 C -0.167 4.167 18 C -0.145 4.145 19 C -0.129 4.129 20 C -0.176 4.176 21 C -0.182 4.182 22 C -0.177 4.177 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.226 0.774 31 H 0.227 0.773 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.983 -28.010 -0.577 29.741 hybrid contribution 1.362 1.148 -0.005 1.781 sum 11.345 -26.861 -0.582 29.165 Atomic orbital electron populations 1.69963 1.06046 1.26663 1.50560 1.25034 0.94861 0.99289 0.95313 0.86579 0.79782 0.83455 0.78068 1.20681 1.21212 1.19929 1.21210 0.92986 0.90960 1.50909 0.92659 1.19034 0.93880 0.90816 0.97716 1.21887 0.99776 0.93353 1.00798 1.21505 0.91317 0.84172 1.01858 1.45388 1.10402 1.04493 1.79395 1.16044 0.85328 0.80812 0.78002 1.90915 1.14202 1.84180 1.57954 1.45140 1.08863 1.05460 1.81494 1.21162 0.96139 0.79088 1.02225 1.21782 0.97734 0.94470 1.02711 1.21481 0.97319 0.93075 1.02605 1.22558 0.97975 0.94574 0.97756 1.23023 1.01326 0.96405 0.96863 1.22847 0.99122 0.97144 0.99125 1.22949 0.99022 0.96157 0.99525 0.92940 0.96232 0.96211 0.92786 0.92785 0.91996 0.91986 0.77361 0.77287 0.91859 0.91840 0.91290 0.91369 0.91438 0.91459 0.89294 0.90049 0.91636 0.90366 0.91604 0.91644 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 12 N -0.74 -11.13 5.56 -65.22 -0.36 -11.50 16 13 C 0.70 11.11 8.57 -86.91 -0.74 10.37 16 14 O -0.59 -12.15 16.34 5.29 0.09 -12.07 16 15 N -0.75 -8.42 5.56 -65.23 -0.36 -8.78 16 16 C 0.14 1.37 5.67 -4.04 -0.02 1.35 16 17 C -0.13 -0.85 5.33 -26.73 -0.14 -0.99 16 18 C -0.11 -0.65 5.04 -26.74 -0.13 -0.79 16 19 C -0.11 -0.62 3.64 -89.81 -0.33 -0.95 16 20 C -0.14 -0.77 7.65 -25.83 -0.20 -0.97 16 21 C -0.14 -0.76 8.09 -25.82 -0.21 -0.97 16 22 C -0.14 -0.76 7.65 -25.91 -0.20 -0.96 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.39 4.66 8.49 -40.82 -0.35 4.31 16 31 H 0.39 3.19 8.49 -40.82 -0.35 2.84 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -33.24 360.89 -10.41 -43.65 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.24 Total: -0.06 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.69 Total: -7.02 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.01 Total: -46.51 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.24 -10.41 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595488908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.871 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds