Wall clock time and date at job start Mon Mar 30 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48500 * 109.47196 * 269.99605 * 3 2 1 5 5 H 1.48496 * 109.47306 * 30.00202 * 3 2 1 6 6 H 1.48508 * 109.47262 * 150.00036 * 3 2 1 7 7 C 1.37884 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46867 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46941 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99649 * 179.97438 * 12 11 10 14 14 O 1.21585 * 119.99913 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99768 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99872 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46840 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.52992 * 109.47482 * 180.02562 * 18 17 16 20 20 C 1.53778 * 113.61727 * 274.13766 * 19 18 17 21 21 C 1.53956 * 87.02468 * 220.04570 * 20 19 18 22 22 C 1.53784 * 113.61658 * 176.52792 * 19 18 17 23 23 H 0.96993 * 120.00410 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47391 * 59.99045 * 9 7 2 25 25 H 1.09001 * 109.46265 * 299.99489 * 9 7 2 26 26 H 1.08996 * 109.47525 * 59.99910 * 10 9 7 27 27 H 1.09000 * 109.46904 * 299.99190 * 10 9 7 28 28 H 1.09002 * 109.47355 * 59.99245 * 11 10 9 29 29 H 1.09000 * 109.46906 * 299.99444 * 11 10 9 30 30 H 0.96992 * 120.00454 * 359.97438 * 12 11 10 31 31 H 0.97005 * 119.99680 * 0.02562 * 15 13 12 32 32 H 1.09001 * 109.46813 * 60.00258 * 16 15 13 33 33 H 1.08992 * 109.47397 * 300.00319 * 16 15 13 34 34 H 1.09002 * 109.47398 * 300.00326 * 17 16 15 35 35 H 1.09001 * 109.47194 * 60.00507 * 17 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 38 38 H 1.09000 * 112.84915 * 45.33452 * 19 18 17 39 39 H 1.08996 * 113.61184 * 334.56845 * 20 19 18 40 40 H 1.09000 * 113.61578 * 105.46835 * 20 19 18 41 41 H 1.09002 * 113.53647 * 270.81670 * 21 20 19 42 42 H 1.08996 * 113.66740 * 139.92974 * 21 20 19 43 43 H 1.08998 * 113.61407 * 254.52625 * 22 19 18 44 44 H 1.08996 * 113.61156 * 25.35491 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0015 14 8 0.7876 -7.5935 0.0024 15 7 2.8588 -8.3958 0.0004 16 6 2.3705 -9.7770 0.0020 17 6 3.5605 -10.7386 -0.0004 18 6 3.0506 -12.1811 0.0007 19 6 4.2405 -13.1427 -0.0010 20 6 4.7814 -13.4511 -1.4071 21 6 4.9510 -14.9067 -0.9352 22 6 3.8357 -14.6239 0.0851 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5572 -0.8895 25 1 0.6241 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8885 29 1 0.8540 -5.0446 0.8914 30 1 3.3859 -5.9234 -0.0005 31 1 3.8125 -8.2185 -0.0007 32 1 1.7633 -9.9486 -0.8868 33 1 1.7665 -9.9478 0.8930 34 1 4.1641 -10.5676 -0.8917 35 1 4.1680 -10.5671 0.8883 36 1 2.4467 -12.3524 0.8918 37 1 2.4433 -12.3524 -0.8881 38 1 5.0146 -12.8595 0.7121 39 1 4.0391 -13.3317 -2.1963 40 1 5.7236 -12.9514 -1.6318 41 1 5.9204 -15.1060 -0.4784 42 1 4.6769 -15.6456 -1.6882 43 1 4.0158 -15.0695 1.0634 44 1 2.8339 -14.8254 -0.2940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595488908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:00 Heat of formation + Delta-G solvation = -71.663037 kcal Electronic energy + Delta-G solvation = -19247.046933 eV Core-core repulsion = 16197.642894 eV Total energy + Delta-G solvation = -3049.404039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02828 -39.80160 -37.26800 -36.38268 -35.18341 -33.71405 -32.64931 -29.03744 -27.80084 -26.42852 -25.06286 -23.86026 -22.35745 -22.24800 -21.68746 -20.20067 -19.15816 -18.51980 -17.32952 -17.05592 -16.52893 -16.46927 -16.12482 -15.77155 -15.37195 -15.30165 -14.98557 -14.26473 -14.05501 -13.74149 -13.62219 -13.45542 -13.26588 -12.96152 -12.74452 -12.53587 -12.45740 -12.35657 -12.16509 -11.70116 -11.66104 -11.65066 -11.37521 -11.31553 -11.16291 -10.94731 -10.85352 -10.54421 -10.39005 -9.75013 -8.18377 -6.29956 1.42411 1.43970 1.54836 1.73308 2.14465 2.42874 3.15272 3.33826 3.71318 3.80004 3.83490 4.02841 4.12234 4.16719 4.19163 4.24467 4.41505 4.57268 4.66646 4.73849 4.80614 4.86106 4.93352 4.95677 4.96984 4.99997 5.06669 5.12288 5.14047 5.18207 5.29171 5.37380 5.47239 5.49222 5.54131 5.56280 5.70449 5.72265 5.85355 6.03642 6.23681 6.87346 7.13461 7.39502 7.58947 8.93735 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.063658 B = 0.002012 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.742057 B =13914.879396 C =14214.211430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.730 5.730 13 C 0.694 3.306 14 O -0.644 6.644 15 N -0.732 5.732 16 C 0.137 3.863 17 C -0.115 4.115 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.142 4.142 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.412 0.588 31 H 0.413 0.587 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.043 -28.325 -0.533 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.386 5.386 13 C 0.393 3.607 14 O -0.526 6.526 15 N -0.389 5.389 16 C 0.012 3.988 17 C -0.153 4.153 18 C -0.143 4.143 19 C -0.126 4.126 20 C -0.178 4.178 21 C -0.183 4.183 22 C -0.179 4.179 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.249 0.751 31 H 0.250 0.750 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.822 -28.430 -0.530 31.192 hybrid contribution 0.478 1.197 -0.022 1.289 sum 13.300 -27.233 -0.552 30.312 Atomic orbital electron populations 1.70112 1.07956 1.27773 1.51666 1.26041 0.95762 1.03596 0.94802 0.85395 0.78660 0.78223 0.78431 1.19836 1.21072 1.18409 1.21687 0.93780 0.91974 1.50464 0.91455 1.18958 0.94500 0.92999 0.95116 1.21583 0.98415 0.91599 1.02163 1.21074 0.91401 0.84728 1.00380 1.45022 1.10849 1.03537 1.79182 1.16247 0.85123 0.81529 0.77753 1.90886 1.16647 1.84918 1.60152 1.44986 1.09312 1.04888 1.79675 1.21277 0.97530 0.78861 1.01085 1.21689 0.96288 0.93560 1.03731 1.21461 0.97571 0.92916 1.02378 1.22544 0.97737 0.94392 0.97930 1.23035 1.01382 0.96640 0.96725 1.22868 0.99275 0.97043 0.99083 1.22970 0.99054 0.96147 0.99750 0.92840 0.98948 0.98924 0.91302 0.91284 0.93631 0.93616 0.75104 0.75033 0.93115 0.93037 0.90321 0.90177 0.91673 0.91820 0.88788 0.90339 0.91327 0.89880 0.91530 0.91408 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.09 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.71 16 11 C 0.15 5.46 5.67 86.38 0.49 5.95 16 12 N -0.73 -20.88 5.56 -478.52 -2.66 -23.54 16 13 C 0.69 21.51 8.57 179.05 1.53 23.05 16 14 O -0.64 -26.68 16.34 -3.98 -0.07 -26.75 16 15 N -0.73 -15.06 5.56 -478.54 -2.66 -17.72 16 16 C 0.14 2.55 5.67 86.38 0.49 3.04 16 17 C -0.11 -1.26 5.33 30.59 0.16 -1.10 16 18 C -0.11 -1.13 5.04 30.59 0.15 -0.98 16 19 C -0.11 -1.02 3.64 -10.27 -0.04 -1.06 16 20 C -0.14 -1.34 7.65 31.18 0.24 -1.10 16 21 C -0.15 -1.32 8.09 31.18 0.25 -1.07 16 22 C -0.14 -1.36 7.65 31.12 0.24 -1.13 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.41 8.63 8.49 -92.71 -0.79 7.85 16 31 H 0.41 5.45 8.49 -92.70 -0.79 4.66 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.74 7.88 -2.39 -0.02 0.72 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.79 7.92 -2.39 -0.02 0.77 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 Total: -1.00 -72.59 360.89 0.84 -71.76 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.61 Total: 14.17 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.53 Total: -6.68 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -5.04 Total: -98.42 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.59 0.84 -71.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595488908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.092 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds