Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.08995 * 115.54981 * 29.33246 * 4 3 2 6 6 C 1.53003 * 117.49810 * 243.62484 * 4 3 2 7 7 C 1.52998 * 59.99897 * 252.51092 * 6 4 3 8 8 C 1.53001 * 117.49991 * 252.50945 * 7 6 4 9 9 C 1.53003 * 117.51872 * 107.48394 * 7 6 4 10 10 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 11 11 O 1.21582 * 120.00123 * 180.02562 * 10 2 1 12 12 N 1.34779 * 119.99559 * 0.02562 * 10 2 1 13 13 C 1.46502 * 119.99726 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47192 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99632 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99978 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46965 * 90.00395 * 20 18 16 22 22 H 1.48504 * 109.46922 * 210.00078 * 20 18 16 23 23 H 1.48501 * 109.47201 * 330.00343 * 20 18 16 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 28 28 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 29 29 H 1.08997 * 117.49628 * 359.97438 * 6 4 3 30 30 H 1.08995 * 117.49736 * 145.01943 * 6 4 3 31 31 H 1.09005 * 109.47244 * 128.62198 * 8 7 6 32 32 H 1.08993 * 109.47631 * 248.62427 * 8 7 6 33 33 H 1.09005 * 109.46700 * 8.62564 * 8 7 6 34 34 H 1.09005 * 109.47206 * 351.36815 * 9 7 6 35 35 H 1.08996 * 109.47235 * 111.37348 * 9 7 6 36 36 H 1.09003 * 109.46978 * 231.37261 * 9 7 6 37 37 H 0.97001 * 119.99999 * 359.97438 * 12 10 2 38 38 H 1.09000 * 109.47166 * 300.00164 * 13 12 10 39 39 H 1.09004 * 109.47230 * 60.00115 * 13 12 10 40 40 H 1.09009 * 109.47056 * 299.99953 * 14 13 12 41 41 H 1.08998 * 109.47239 * 59.99505 * 14 13 12 42 42 H 1.08997 * 109.46411 * 299.99641 * 15 14 13 43 43 H 1.08990 * 109.47304 * 59.99563 * 15 14 13 44 44 H 0.97002 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 2.5438 0.9053 2.1715 6 6 1.8015 3.0146 1.9076 7 6 3.3099 2.9591 1.6579 8 6 4.2297 2.9823 2.8805 9 6 3.8473 3.6702 0.4144 10 6 2.1389 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0005 13 6 2.1975 -3.6031 0.0005 14 6 1.2033 -4.7661 -0.0001 15 6 1.9683 -6.0911 0.0005 16 6 0.9889 -7.2365 0.0005 17 1 -0.0728 -7.0391 0.0005 18 6 1.4486 -8.5364 0.0005 19 7 2.7416 -8.7767 0.0010 20 14 0.2346 -9.9563 0.0012 21 1 -0.0875 -10.3327 -1.3986 22 1 0.8349 -11.1203 0.7012 23 1 -1.0084 -9.5445 0.7017 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 3.1499 1.1384 -0.5137 28 1 1.6085 2.0284 -0.5138 29 1 1.1919 3.5581 1.1857 30 1 1.4643 3.0676 2.9427 31 1 4.9364 2.1546 2.8193 32 1 4.7758 3.9251 2.9065 33 1 3.6319 2.8834 3.7866 34 1 3.0130 3.9973 -0.2062 35 1 4.4364 4.5359 0.7170 36 1 4.4754 2.9839 -0.1537 37 1 0.4950 -2.3344 0.0005 38 1 2.8242 -3.6609 -0.8894 39 1 2.8242 -3.6609 0.8905 40 1 0.5763 -4.7085 0.8897 41 1 0.5770 -4.7081 -0.8903 42 1 2.5955 -6.1488 -0.8890 43 1 2.5943 -6.1488 0.8908 44 1 3.0650 -9.6913 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595494062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = -24.668386 kcal Electronic energy + Delta-G solvation = -20232.428792 eV Core-core repulsion = 17185.062595 eV Total energy + Delta-G solvation = -3047.366198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16923 -38.69436 -35.63432 -35.11463 -33.26655 -31.22820 -29.89294 -28.17739 -27.43618 -26.94062 -25.36032 -22.94355 -21.53332 -20.60287 -19.58746 -18.92054 -17.81564 -16.63687 -16.15240 -15.80967 -15.11301 -14.75992 -14.47122 -14.16417 -14.13927 -13.79173 -13.68354 -13.15689 -13.01995 -12.62836 -12.58860 -12.35918 -12.25087 -12.05109 -11.77175 -11.74390 -11.62508 -11.32490 -10.89359 -10.68732 -10.57926 -10.07674 -10.04598 -9.83797 -9.74151 -9.41217 -9.10864 -8.89135 -8.45847 -8.35862 -6.00506 -4.03557 2.71926 3.31460 3.37718 3.37850 3.40567 3.51935 4.07698 4.44661 4.46046 4.52193 4.63009 4.84595 4.89812 5.07429 5.21013 5.34082 5.35196 5.40841 5.44338 5.50391 5.56959 5.62340 5.66682 5.69095 5.72929 5.77567 5.84519 5.92433 6.00616 6.12206 6.21500 6.45965 6.58508 6.64995 6.83950 7.04963 7.05413 7.65593 7.78725 7.98620 8.11301 8.39552 8.78191 9.03208 9.60458 11.10824 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040546 B = 0.002737 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.403190 B =10226.006102 C =10495.120203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.636 5.636 3 C 0.167 3.833 4 C -0.155 4.155 5 H 0.105 0.895 6 C -0.174 4.174 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.117 4.117 10 C 0.701 3.299 11 O -0.589 6.589 12 N -0.742 5.742 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.393 0.607 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 25.598 1.749 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.374 5.374 3 C 0.044 3.956 4 C -0.175 4.175 5 H 0.123 0.877 6 C -0.210 4.210 7 C -0.124 4.124 8 C -0.172 4.172 9 C -0.174 4.174 10 C 0.402 3.598 11 O -0.467 6.467 12 N -0.397 5.397 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.834 25.414 1.739 25.631 hybrid contribution -1.240 -0.893 0.118 1.532 sum -4.073 24.521 1.857 24.927 Atomic orbital electron populations 1.21698 0.80031 1.02777 1.01686 1.47006 1.06197 1.04999 1.79181 1.20816 0.97458 0.83320 0.94035 1.22950 1.04081 0.91604 0.98854 0.87704 1.23329 0.94752 1.00882 1.02080 1.21567 0.92234 1.00786 0.97842 1.21352 0.98701 1.01993 0.95198 1.21358 1.00884 0.99699 0.95446 1.15968 0.85418 0.80421 0.77999 1.90910 1.11563 1.86224 1.57972 1.45544 1.09831 1.05185 1.79175 1.21510 0.95148 0.80424 1.01856 1.21886 0.97859 0.95296 1.00755 1.19025 0.95475 0.89169 0.97696 1.21206 0.92984 0.90950 1.50881 0.92667 1.25034 0.95126 0.99022 0.95312 1.69969 1.12520 1.20205 1.50590 0.86583 0.81246 0.82004 0.78081 1.20666 1.21209 1.19913 0.92769 0.91404 0.91093 0.89383 0.90795 0.88944 0.89097 0.91979 0.92212 0.92625 0.92502 0.92182 0.91838 0.77166 0.91988 0.91991 0.92821 0.92822 0.96240 0.96237 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.25 59.85 0.61 1.29 16 2 N -0.64 -7.65 2.87 -187.35 -0.54 -8.19 16 3 C 0.17 1.78 4.81 -4.04 -0.02 1.76 16 4 C -0.16 -1.60 5.73 -90.62 -0.52 -2.12 16 5 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 6 C -0.17 -1.39 9.47 -26.73 -0.25 -1.65 16 7 C -0.12 -1.10 2.70 -154.51 -0.42 -1.51 16 8 C -0.12 -0.98 9.85 37.16 0.37 -0.62 16 9 C -0.12 -0.89 8.86 37.16 0.33 -0.56 16 10 C 0.70 11.37 8.28 -86.91 -0.72 10.66 16 11 O -0.59 -11.95 15.92 5.29 0.08 -11.86 16 12 N -0.74 -11.42 5.42 -65.22 -0.35 -11.78 16 13 C 0.13 2.47 5.67 -4.04 -0.02 2.44 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.53 6.36 -51.93 -0.33 0.19 16 26 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 27 H 0.09 1.11 7.05 -51.93 -0.37 0.74 16 28 H 0.07 0.60 7.63 -51.93 -0.40 0.20 16 29 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 30 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 33 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 34 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 35 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 36 H 0.06 0.53 7.83 -51.93 -0.41 0.13 16 37 H 0.39 4.95 6.20 -40.82 -0.25 4.69 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -33.01 358.72 -9.00 -42.02 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.98 Total: -0.04 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.33 Total: -5.83 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.16 Total: -46.24 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.01 -9.00 -42.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595494062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.347 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds