Wall clock time and date at job start Mon Mar 30 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.08995 * 115.54981 * 29.33246 * 4 3 2 6 6 C 1.53003 * 117.49810 * 243.62484 * 4 3 2 7 7 C 1.52998 * 59.99897 * 252.51092 * 6 4 3 8 8 C 1.53001 * 117.49991 * 252.50945 * 7 6 4 9 9 C 1.53003 * 117.51872 * 107.48394 * 7 6 4 10 10 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 11 11 O 1.21582 * 120.00123 * 180.02562 * 10 2 1 12 12 N 1.34779 * 119.99559 * 0.02562 * 10 2 1 13 13 C 1.46502 * 119.99726 * 179.97438 * 12 10 2 14 14 C 1.52998 * 109.47192 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47328 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99632 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99978 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99855 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46965 * 90.00395 * 20 18 16 22 22 H 1.48504 * 109.46922 * 210.00078 * 20 18 16 23 23 H 1.48501 * 109.47201 * 330.00343 * 20 18 16 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 28 28 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 29 29 H 1.08997 * 117.49628 * 359.97438 * 6 4 3 30 30 H 1.08995 * 117.49736 * 145.01943 * 6 4 3 31 31 H 1.09005 * 109.47244 * 128.62198 * 8 7 6 32 32 H 1.08993 * 109.47631 * 248.62427 * 8 7 6 33 33 H 1.09005 * 109.46700 * 8.62564 * 8 7 6 34 34 H 1.09005 * 109.47206 * 351.36815 * 9 7 6 35 35 H 1.08996 * 109.47235 * 111.37348 * 9 7 6 36 36 H 1.09003 * 109.46978 * 231.37261 * 9 7 6 37 37 H 0.97001 * 119.99999 * 359.97438 * 12 10 2 38 38 H 1.09000 * 109.47166 * 300.00164 * 13 12 10 39 39 H 1.09004 * 109.47230 * 60.00115 * 13 12 10 40 40 H 1.09009 * 109.47056 * 299.99953 * 14 13 12 41 41 H 1.08998 * 109.47239 * 59.99505 * 14 13 12 42 42 H 1.08997 * 109.46411 * 299.99641 * 15 14 13 43 43 H 1.08990 * 109.47304 * 59.99563 * 15 14 13 44 44 H 0.97002 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 2.5438 0.9053 2.1715 6 6 1.8015 3.0146 1.9076 7 6 3.3099 2.9591 1.6579 8 6 4.2297 2.9823 2.8805 9 6 3.8473 3.6702 0.4144 10 6 2.1389 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0005 13 6 2.1975 -3.6031 0.0005 14 6 1.2033 -4.7661 -0.0001 15 6 1.9683 -6.0911 0.0005 16 6 0.9889 -7.2365 0.0005 17 1 -0.0728 -7.0391 0.0005 18 6 1.4486 -8.5364 0.0005 19 7 2.7416 -8.7767 0.0010 20 14 0.2346 -9.9563 0.0012 21 1 -0.0875 -10.3327 -1.3986 22 1 0.8349 -11.1203 0.7012 23 1 -1.0084 -9.5445 0.7017 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 3.1499 1.1384 -0.5137 28 1 1.6085 2.0284 -0.5138 29 1 1.1919 3.5581 1.1857 30 1 1.4643 3.0676 2.9427 31 1 4.9364 2.1546 2.8193 32 1 4.7758 3.9251 2.9065 33 1 3.6319 2.8834 3.7866 34 1 3.0130 3.9973 -0.2062 35 1 4.4364 4.5359 0.7170 36 1 4.4754 2.9839 -0.1537 37 1 0.4950 -2.3344 0.0005 38 1 2.8242 -3.6609 -0.8894 39 1 2.8242 -3.6609 0.8905 40 1 0.5763 -4.7085 0.8897 41 1 0.5770 -4.7081 -0.8903 42 1 2.5955 -6.1488 -0.8890 43 1 2.5943 -6.1488 0.8908 44 1 3.0650 -9.6913 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595494062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:50 Heat of formation + Delta-G solvation = -44.514254 kcal Electronic energy + Delta-G solvation = -20233.289374 eV Core-core repulsion = 17185.062595 eV Total energy + Delta-G solvation = -3048.226779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31696 -39.52252 -37.07318 -36.33768 -35.18004 -32.99789 -30.73174 -28.96734 -28.52840 -28.12616 -26.57603 -24.68017 -22.40438 -22.28493 -20.82372 -19.66795 -18.98784 -18.47224 -17.53460 -16.96651 -16.52161 -16.07757 -15.95295 -15.37776 -15.15049 -14.76812 -14.50826 -14.28761 -14.15827 -13.79820 -13.71674 -13.46905 -13.29878 -13.23004 -13.05275 -12.76020 -12.74507 -12.51550 -12.38563 -12.35623 -11.99672 -11.67976 -11.61887 -11.29827 -11.14201 -10.76687 -10.55327 -10.49221 -10.21241 -9.49922 -8.19224 -6.30946 1.41818 1.43549 1.54383 1.63810 2.11116 2.42122 2.79325 3.01453 3.14486 3.72995 3.84963 3.89216 4.13789 4.19566 4.20388 4.21714 4.36522 4.54225 4.56002 4.66652 4.70225 4.76720 4.85670 4.90032 4.93948 4.95103 4.98483 5.03864 5.05195 5.07957 5.15958 5.24318 5.29479 5.45412 5.46588 5.53548 5.60741 5.70552 5.84065 5.91388 6.22432 6.86125 6.96886 7.38632 7.54367 8.93088 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040546 B = 0.002737 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.403190 B =10226.006102 C =10495.120203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.628 5.628 3 C 0.168 3.832 4 C -0.174 4.174 5 H 0.072 0.928 6 C -0.148 4.148 7 C -0.131 4.131 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.694 3.306 11 O -0.638 6.638 12 N -0.731 5.731 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.260 1.260 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.410 0.590 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.069 0.931 42 H -0.008 1.008 43 H -0.009 1.009 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 27.254 1.576 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.364 5.364 3 C 0.045 3.955 4 C -0.194 4.194 5 H 0.091 0.909 6 C -0.185 4.185 7 C -0.131 4.131 8 C -0.174 4.174 9 C -0.172 4.172 10 C 0.395 3.605 11 O -0.520 6.520 12 N -0.388 5.388 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.578 4.578 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.184 1.184 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.900 27.120 1.568 27.799 hybrid contribution -0.275 -1.341 0.193 1.382 sum -6.175 25.779 1.761 26.567 Atomic orbital electron populations 1.22003 0.77214 1.04661 1.02945 1.47085 1.07928 1.03914 1.77503 1.20930 0.96884 0.83319 0.94388 1.22758 1.06937 0.91775 0.97913 0.90915 1.23387 0.94020 0.98247 1.02818 1.21730 0.93203 0.99820 0.98381 1.21372 0.98591 1.02022 0.95436 1.21366 1.01391 0.99561 0.94902 1.16197 0.84963 0.81519 0.77841 1.90875 1.13947 1.87069 1.60125 1.45200 1.10467 1.04002 1.79167 1.21074 0.94631 0.81585 1.00293 1.21582 0.97432 0.92589 1.02100 1.18938 0.95184 0.92211 0.95055 1.21677 0.93879 0.91827 1.50443 0.91432 1.26049 0.97050 1.02338 0.94774 1.70121 1.14835 1.20979 1.51710 0.85394 0.78913 0.77922 0.78482 1.19757 1.21073 1.18355 0.91761 0.90763 0.88054 0.92066 0.87282 0.86725 0.88661 0.93823 0.90728 0.92378 0.90939 0.91104 0.93277 0.75185 0.93596 0.93809 0.91423 0.91252 0.98954 0.99038 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 10.25 127.77 1.31 2.29 16 2 N -0.63 -14.33 2.87 -864.91 -2.49 -16.82 16 3 C 0.17 3.38 4.81 86.38 0.42 3.80 16 4 C -0.17 -3.48 5.73 -10.79 -0.06 -3.54 16 5 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 6 C -0.15 -1.99 9.47 30.59 0.29 -1.70 16 7 C -0.13 -2.17 2.70 -52.18 -0.14 -2.31 16 8 C -0.12 -1.96 9.85 71.98 0.71 -1.25 16 9 C -0.12 -1.59 8.86 71.98 0.64 -0.95 16 10 C 0.69 22.67 8.28 179.05 1.48 24.16 16 11 O -0.64 -27.09 15.92 -3.97 -0.06 -27.16 16 12 N -0.73 -22.18 5.42 -478.53 -2.59 -24.78 16 13 C 0.15 5.62 5.67 86.38 0.49 6.11 16 14 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 15 C 0.02 1.26 4.97 29.85 0.15 1.41 16 16 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 19 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 20 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.91 6.36 -2.39 -0.02 0.90 16 26 H 0.10 0.79 7.89 -2.38 -0.02 0.77 16 27 H 0.06 1.57 7.05 -2.39 -0.02 1.56 16 28 H 0.11 1.40 7.63 -2.39 -0.02 1.39 16 29 H 0.11 1.06 7.94 -2.39 -0.02 1.04 16 30 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 1.00 7.92 -2.39 -0.02 0.98 16 33 H 0.06 0.91 7.90 -2.38 -0.02 0.89 16 34 H 0.07 0.76 7.90 -2.38 -0.02 0.74 16 35 H 0.07 0.82 7.92 -2.39 -0.02 0.80 16 36 H 0.05 0.82 7.83 -2.39 -0.02 0.80 16 37 H 0.41 9.53 6.20 -92.71 -0.58 8.96 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.14 358.72 3.68 -70.46 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.38 Total: 15.51 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 6.14 Total: -5.71 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -4.79 Total: -99.13 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.06 Total: -27.16 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.14 3.68 -70.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595494062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.943 kcal (2) G-P(sol) polarization free energy of solvation -74.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds